Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,489,764	T→C	intergenic (‑71513/‑1771)	unknown ← / → unknown	SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,489,764	0	T	C	100.0%	205.0 / NA	68	intergenic (‑71513/‑1771)	unknown/unknown	SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (29/39);  total (29/39)

CTGATTTTAAGTGCACTTATTGTTTATTGTTTTCCTGGGATGTTAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGTATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGTGATCCGTGTGCACGGTTTTATCGTGCAAATCGGCGAAGAGATTATCTGCCGCCGCGAAAAAGAGCGGTCCGCTGATACGATAAATTAACACGTCGTCTAAATCCTCTGGCACAGCAATGCT  >  1/1489523‑1490009                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                      cTGATTTTAAGTGCACTTATTGTTTATTGTTTTCCTGGGATGTTAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGcac                                                                                                                                                                                                                                              <  1:61512/251‑1 (MQ=255)   gATTTTAAGTGCACTTATTGTTTATTGTTTTCCTGGGATGTTAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACat                                                                                                                                                                                                                                            >  1:588013/1‑251 (MQ=255)         aaGTGCACTTATTGTTTATTGTTTTCCTGGGATGTTAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAg                                                                                                                                                                                                                                      <  1:130729/251‑1 (MQ=255)         aaGTGCACTTATTGTTTATTGTTTTCCTGGGATGTTAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAg                                                                                                                                                                                                                                      <  1:475613/251‑1 (MQ=255)              cACTTATTGTTTATTGTTTTCCTGGGATGTTAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAgttgt                                                                                                                                                                                                                                  <  1:418801/250‑1 (MQ=255)                          attgtttTCCTGGGATGTTAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCa                                                                                                                                                                                                                     <  1:313220/251‑1 (MQ=255)                               tttCCTGGGATGTTAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATAtgc                                                                                                                                                                                                                <  1:684821/251‑1 (MQ=255)                               tttCCTGGGATGTTAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATAtgc                                                                                                                                                                                                                <  1:796878/251‑1 (MQ=255)                               tttCCTGGGATGTTAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATAtgc                                                                                                                                                                                                                <  1:409968/251‑1 (MQ=255)                               tttCCTGGGATGTTAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATAtgc                                                                                                                                                                                                                <  1:27691/251‑1 (MQ=255)                               tttCCTGGGATGTTAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATAtgc                                                                                                                                                                                                                <  1:160401/251‑1 (MQ=255)                                    tGGGATGTTAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGcac                                                                                                                                                                                                           <  1:36538/251‑1 (MQ=255)                                        aTGTTAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGc                                                                                                                                                                                                                                                <  1:92340/210‑1 (MQ=255)                                         tGTTAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACTTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGc                                                                                                                                                                                                      <  1:451225/251‑1 (MQ=255)                                         tGTTAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGc                                                                                                                                                                                                      <  1:237136/251‑1 (MQ=255)                                         tGTTAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGc                                                                                                                                                                                                      <  1:323826/251‑1 (MQ=255)                                            tAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCggg                                                                                                                                                                                                   <  1:589146/251‑1 (MQ=255)                                                     gaaCAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATAtgc                                                                                                                                                                                                                <  1:530535/229‑1 (MQ=255)                                                     gaaCAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCATCCGCAGCGGTTGGAATTGCATATTGCACATATAAAg                                                                                                                                                                                                                                      >  1:450145/1‑207 (MQ=255)                                                        cAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGa                                                                                                                                                                                       <  1:640150/251‑1 (MQ=255)                                                              aaGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGcccc                                                                                                                                                                                 <  1:665997/251‑1 (MQ=255)                                                                ggTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAg                                                                                                                                                                                                                       >  1:521568/1‑211 (MQ=255)                                                                ggTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCg                                                                                                                                                                               >  1:381507/1‑251 (MQ=255)                                                                 gTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGa                                                                                                                                                                                       >  1:453408/1‑242 (MQ=255)                                                                    tGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTAt                                                                                                                                                                           <  1:254344/251‑1 (MQ=255)                                                                     gTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGt                                                                                                                                                                             >  1:406147/1‑248 (MQ=255)                                                                          attaAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCGAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATAtgc                                                                                                                                                                                                                >  1:344226/1‑208 (MQ=255)                                                                          attaAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATAtgc                                                                                                                                                                                                                <  1:479183/208‑1 (MQ=255)                                                                          attaAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGc                                                                                                                                                                                                      <  1:669704/218‑1 (MQ=255)                                                                          attaAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAaca                                                                                                                                                                     >  1:165155/1‑251 (MQ=255)                                                                                    ctctCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAg                                                                                                                                                                                                                                      >  1:284371/1‑176 (MQ=255)                                                                                    ctctCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTGGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGcc                                                                                                                                                                                   <  1:384036/227‑1 (MQ=255)                                                                                         gTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGcac                                                                                                                                                                                                           <  1:69289/198‑1 (MQ=255)                                                                                         gTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGc                                                                                                                                                                                                      <  1:67167/203‑1 (MQ=255)                                                                                              aaCCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGc                                                                                                                                                                                                                                                <  1:200218/156‑1 (MQ=255)                                                                                                    tCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGc                                                                                                                                                                                                                                                <  1:834899/150‑1 (MQ=255)                                                                                                     cATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGa                                                                                                                                          >  1:271181/1‑251 (MQ=255)                                                                                                      aTTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCat                                                                                                                                                                                                                    >  1:513828/1‑176 (MQ=255)                                                                                                      aTTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGat                                                                                                                                         >  1:638854/1‑251 (MQ=255)                                                                                                      aTTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGat                                                                                                                                         >  1:494812/1‑251 (MQ=255)                                                                                                            ctctCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCatat                                                                                                                                                                                                                                                   <  1:362629/139‑1 (MQ=255)                                                                                                            ctctCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGttt                                                                                                                                   >  1:446193/1‑251 (MQ=255)                                                                                                                 aCTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGAttt                                                                                                                              <  1:402268/251‑1 (MQ=255)                                                                                                                    ctTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGt                                                                                                                           >  1:782619/1‑251 (MQ=255)                                                                                                                                 cccTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGTGATCCGTGTGCAc                                                                                                              <  1:39354/251‑1 (MQ=255)                                                                                                                                  ccTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGc                                                                                                                                                      >  1:708232/1‑210 (MQ=255)                                                                                                                                  ccTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGTGATCCGTGTGCACg                                                                                                             >  1:372152/1‑251 (MQ=255)                                                                                                                                         cTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGTGATCCGTGTGCACGGTTTTAt                                                                                                      >  1:485457/1‑251 (MQ=255)                                                                                                                                                aTCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTaa                                                                                                                                               <  1:630590/203‑1 (MQ=255)                                                                                                                                                aTCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGTGATCCGTGTGCACGGTTTTAt                                                                                                      >  1:569904/1‑244 (MQ=255)                                                                                                                                                aTCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGTGATCCGTGTGCACGGTTTTATCGTGCaa                                                                                               >  1:157377/1‑251 (MQ=255)                                                                                                                                                    tATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATg                                                                                                                                      >  1:144675/1‑208 (MQ=255)                                                                                                                                                            gCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAacac                                                                                                                                                                    >  1:110770/1‑170 (MQ=255)                                                                                                                                                                 cGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGa                                                                                                                                                                                       >  1:188783/1‑146 (MQ=255)                                                                                                                                                                                  aGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGTGATCCGTGTGCACGGTTTTATCGTGCAAATCGGCGAAGAGATTATCTGCCGCCGCGAAAAag                                                             >  1:537844/1‑251 (MQ=255)                                                                                                                                                                                    ttGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGTGATCCGTGTGCACGGTTTTATCGTGCAAATCGGCGAAGAGATTATCTGCCGCCGCGAAAAag                                                             <  1:94671/249‑1 (MQ=255)                                                                                                                                                                                                aTTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGTGATCCGTGTGCACGGTTTTATCGTGCAAATCGGCGAAGAGATTATCTGCCGCCGCGAAAAAGAGCGGTCCGCTGa                                                <  1:776108/250‑1 (MQ=255)                                                                                                                                                                                                aTTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGTGATCCGTGTGCACGGTTTTATCGTGCAAATCGGCGAAGAGATTATCTGCCGCCGCGAAAAAGAGCGGTCCGCTGa                                                <  1:263986/250‑1 (MQ=255)                                                                                                                                                                                                 tttCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGTGATCCGTGTGCACGGTTTTATCGTGCAAATCGGCGAAGAGATTATCTGCCGCCGCGAAAAAGAGCGGTCCGCTGATa                                              <  1:132442/251‑1 (MQ=255)                                                                                                                                                                                                          ggCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAac                                                                                                                                                                      >  1:805210/1‑122 (MQ=255)                                                                                                                                                                                                                 ggATTTGACAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGTGATCCGTGTGCACGGTTTTATCGTGCAAATCGGCGAAGAGATTATCTGCCGCCGCGAAAAAGAGTGGTCCGCTGATACGATAAATTAacac                                >  1:730271/1‑249 (MQ=255)                                                                                                                                                                                                                        aCAATCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAacac                                                                                                                                                                    <  1:91500/110‑1 (MQ=255)                                                                                                                                                                                                                           aTCGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGTGATCCGTGTGCACGGTTTTATCGTGCAAATCGGCGAAGAGATTATCTGCCGCCGCGAAAAAGAGCGGTCCGCTGATACGATAAATTAACACGTCGTCTAAATc                    <  1:451093/251‑1 (MQ=255)                                                                                                                                                                                                                             cGTCCGCAGCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGTGATCCGTGTGCACGGTTTTATCGTGCAAATCGGCGAAGAGATTATCTGCCGCCGCGAAAAAGAGCGGTCCGCTGATACGATAAATTAac                                  <  1:623903/235‑1 (MQ=255)                                                                                                                                                                                                                                     gCGGTTGGAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGTGATCCGTGTGCACGGTTTTATCGTGCAAATCGGCGAAGAGATTATCTGCCGCCGCGAAAAAGAGCGGTCCGCTGATACGATAAATTAACACGTCGTCTAAATCCTCTGGcacg          >  1:511128/1‑250 (MQ=255)                                                                                                                                                                                                                                            gAATTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTa                                                                                                                                                                            >  1:864198/1‑82 (MQ=255)                                                                                                                                                                                                                                             aaTTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGTGATCCGTGTGCACGGTTTTATCGTGCAAATCGGCGAAGAGATTATCTGCCGCCGCGAAAAAGAGCGGTCCGCTGATACGATAAATTAACACGTCGTCTAAATCCTCTGGCACGGCAATGCt  <  1:660367/251‑1 (MQ=255)                                                                                                                                                                                                                                              aTTGCATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGTGATCCGTGTGCACGGTTTTATCGTGCAAATCGGCGAAGAGATTATCTGCCGCCGCGAAAAAGAGCGGTCCGCTGATACGATAAATTAACACGTCGTCTAAATCCTCTGGCACGGCAATg    >  1:111106/1‑248 (MQ=255)                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                      CTGATTTTAAGTGCACTTATTGTTTATTGTTTTCCTGGGATGTTAAAACGAAGAACAAATAAAGGTATGTTTTATTAAAAGCACTCTCGTTTTAACCAATCATTTAACTCTCACTCTTCACCTCGATTCCCTCAAACTCCCGAATCTTATTCAATGCTTCCGGCAAATCCGTGGCGAAGTTGATTTTTTTGATTTCCGGCAGGCTACCGGATTTGACAATCGTCCGCAGCGGTTGGAATTGTATATTGCACATATAAAGTTGTTGATGCGGAAGCATATGCTGCACAAAGCGGGTGAGGGCATGGATGCCCCCGGTATCTAACACGGTCACGGCATCGCATTGTAAAACGATATGTTTGATTTCGTGATCCGTGTGCACGGTTTTATCGTGCAAATCGGCGAAGAGATTATCTGCCGCCGCGAAAAAGAGCGGTCCGCTGATACGATAAATTAACACGTCGTCTAAATCCTCTGGCACAGCAATGCT  >  1/1489523‑1490009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑