| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,485,315 | C→T | intergenic (‑67064/‑6220) | unknown ← / → unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,485,315 | 0 | C | T | 100.0% | 173.9 / NA | 58 | intergenic (‑67064/‑6220) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (29/29); total (29/29) | |||||||||||
TTATTTATACAATACACTTTGGAAAGCACATCAAGATAACGAACCTATATTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGCGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAATTATTAATTATGCCTTTTATTAATCAAGGAGAAAGAAATATCACAGTGTTTGATGATGATGGCGAAAGTTTTGATTATCTCAAAGGTAAATATTTAGAGCTTCACATTCAT > 1/1485081‑1485546 | ttatttatACAATACACTTTGGAAAGCACATCAAGATAACGAACCTATATTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACgg > 1:523762/1‑251 (MQ=255) tatttatACAATACACTTTGGAAAGCACATCAAGATAACGAACCTATATTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGt > 1:334450/1‑251 (MQ=255) tatttatACAATACACTTTGGAAAGCACATCAAGATAACGAACCTATATTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGt < 1:730354/251‑1 (MQ=255) tatttatACAATACACTTTGGAAAGCACATCAAGATAACGAACCTATATTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGt > 1:721059/1‑251 (MQ=255) atttatACAATACACTTTGGAAAGCACATCAAGATAACGAACCTATATTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTa > 1:30232/1‑251 (MQ=255) atttatACAATACACTTTGGAAAGCACATCAAGATAACGAACCTATATTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTa > 1:173554/1‑251 (MQ=255) atttatACAATACACTTTGGAAAGCACATCAAGATAACGAACCTATATTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTa > 1:216170/1‑251 (MQ=255) atttatACAATACACTTTGGAAAGCACATCAAGATAACGAACCTATATTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGCGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTa > 1:289299/1‑251 (MQ=255) tttGGAAAGCACATCAAGATAACGAACCTATATTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGaa < 1:576328/251‑1 (MQ=255) ttGGAAAGCACATCAAGATAACGAACCTATATTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGaaa > 1:884584/1‑251 (MQ=255) gAAAGCACATCAAGATAACGAACCTATATTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAgg < 1:297128/250‑1 (MQ=255) aaGCACATCAAGATAACGAACCTATATTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATc < 1:717835/251‑1 (MQ=255) cGAACCTATATTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAagag > 1:329501/1‑251 (MQ=255) gAACCTATATTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAagag > 1:1217/1‑250 (MQ=255) aaCCTATATTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGcc > 1:146039/1‑220 (MQ=255) ccTATATTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGaa < 1:312282/225‑1 (MQ=255) tataTTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGaa < 1:80330/251‑1 (MQ=255) tttCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATgg < 1:91628/251‑1 (MQ=255) ttCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTc > 1:556492/1‑244 (MQ=255) aTCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATa < 1:885626/189‑1 (MQ=255) aTCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGaaaa > 1:227299/1‑251 (MQ=255) aTCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGaaa < 1:863613/250‑1 (MQ=255) aTCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAACTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGaaa < 1:409313/250‑1 (MQ=255) aTGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATaaa < 1:101042/251‑1 (MQ=255) tGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCCCgg > 1:434112/1‑173 (MQ=255) tGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAag > 1:113948/1‑210 (MQ=255) gATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATaaaaa > 1:258257/1‑251 (MQ=255) aaaaaCACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATAc < 1:424429/251‑1 (MQ=255) aaaCACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACAt < 1:638070/251‑1 (MQ=255) acaTTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATc < 1:772692/251‑1 (MQ=255) acaTTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATc < 1:383631/251‑1 (MQ=255) caTTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAg > 1:406713/1‑208 (MQ=255) cAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCtgatga < 1:389906/250‑1 (MQ=255) gatgatTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCgaga > 1:734413/1‑251 (MQ=255) atTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGaaa < 1:140164/211‑1 (MQ=255) gTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAATTATTAATTATGcc < 1:759786/250‑1 (MQ=255) gATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTAt < 1:656139/214‑1 (MQ=255) cATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAATTATTAATTATGCCTTTTATTAATCAAGGagaa > 1:771063/1‑251 (MQ=255) cATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAATTATTAATTATGCCTTTTATTAATCAAGGagaa < 1:254421/251‑1 (MQ=255) gtgGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACAt < 1:150435/193‑1 (MQ=255) gtgGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCtgatga > 1:620599/1‑203 (MQ=255) aaCCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAg < 1:437119/148‑1 (MQ=255) aTCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAATTATTAATTATGCCTTTTATTAATCAAGGAGAAAGAAATATCACAGTGttt > 1:647907/1‑251 (MQ=255) aaaGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAATTATTAATTATGCCTTTTATTAATCAAGGAGAAAGAAATATCACAGTGTTtgat < 1:522552/251‑1 (MQ=255) aaGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAATTATTAATTATGCCTTTTATTAATCAAGGAGAAAGAAATATCACAGTGTTtgatg < 1:776713/251‑1 (MQ=255) aaGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGAGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAATTATTAATTATGCCTTTTATTAATCAAGGAGAAAGAAATATCACAGTG‑Ttgatga < 1:483844/251‑1 (MQ=255) gagTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACAt > 1:78019/1‑174 (MQ=255) gagTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAATTATTAATTATGCCTTTTATTAATCAAGGagaaaga > 1:742549/1‑230 (MQ=255) agTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAATTATTAATTATGCCTTTTATTAATCAAGGAGAAAGAAATATCACAGTGTTtgatga < 1:102440/249‑1 (MQ=255) ggATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAattatt < 1:504267/192‑1 (MQ=255) ggATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAATTATTAATTATGCCTTTTATTAATc > 1:105814/1‑212 (MQ=255) ggTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAATTATTAATTATGCCTTTTATTAATCAAGGAGAAAGAAATATCACAg > 1:900137/1‑201 (MQ=255) ggTATGACTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAATTATTAATTATGCCTTTTATTAATCAAGGAGAAAGAAATATCACAGTGTTTGATGATGATGGCGAAAGTTTTGATTATCTCAAAGGTAAata < 1:475715/247‑1 (MQ=255) cTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAATTATTAATTATGCCTTTTATTAATCAAGGAGAAAGAAATATCACAGTGTTTGATGATGATGGCGAAAGttt < 1:855142/219‑1 (MQ=255) cTTTTACACTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAATTATTAATTATGCCTTTTATTAATCAAGGAGAAAGAAATATCACAGTGTTTGATGATGATGGCGAAAGTTTTGATTATCTCAAAGGTAAATATTTAGAGCtt > 1:861545/1‑250 (MQ=255) acacTCATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAATTATTAATTATGCCTTTTATTAATc > 1:340541/1‑168 (MQ=255) cATAAATGGTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAATTATTAATTATGCCTTTTATTAATCAAGGAGAAAGAAATATCACAGTGTTTGATGATGATGGCGAAAGTTTTGATTATCTCAAAGGTAAATATTTAGAGCTTCACATTCAt > 1:56724/1‑249 (MQ=255) gTTTAATGGTGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAattatt > 1:558056/1‑135 (MQ=255) | TTATTTATACAATACACTTTGGAAAGCACATCAAGATAACGAACCTATATTGCGTCCAACTTTCCTTGATCATGAACATGATAAAAACACATTTGCAGAAAATGATGATTATCTTCTTGGTGAAGATTTATTAGTCGCATCTGTGGTAGAACCAAATCAAAGAGTACGGGATGTTTATCTTCCACAAAATTTTGCAGGCTGGTATGACTTTTACACTCATAAATGGTTTAATGGCGGCGAAAAAATCACGGTAGATACGCCATTAGAAAGGATCCCTTTATTTTTAAGAGCTGGAAGTGTCATTCCAATGGCGAGAAAAGGTCATAAAAATACATTATCTGATGATTATCGAGAATTATTAATTATGCCTTTTATTAATCAAGGAGAAAGAAATATCACAGTGTTTGATGATGATGGCGAAAGTTTTGATTATCTCAAAGGTAAATATTTAGAGCTTCACATTCAT > 1/1485081‑1485546 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |