| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,466,925 | A→G | intergenic (‑48674/‑24610) | unknown ← / → unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,466,925 | 0 | A | G | 98.8% | 222.5 / ‑4.7 | 80 | intergenic (‑48674/‑24610) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (34/45); total (35/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.38e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.92e-01 | |||||||||||
ATGGACGTTTCCCGCCCGAATAACTGGCCACGTGTGGAAGAATTGTTCAAACGTAACGGCTGGACATTAACCGAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCAGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGATTTTGACCGCACTTTTCTTACTGCCTATGACTACCCTCATCGCTTGGGGAAACATTCAAACGCCC > 1/1466689‑1467166 | aTGGACGTTTCCCGCCCGAATAACTGGCCGCGTGTGGAAGAATTGTTCAAACGTAACGGCTGGACATTAACCGAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGa < 1:555292/251‑1 (MQ=255)aTGGACGTTTCCCGCCCGAATAACTGGCCGCGTGTGGAAGAATTGTTCAAACGTAACGGCTGGACATTAACCGAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGa < 1:44526/251‑1 (MQ=255) tttCCCGCCCGAATAACTGGCCGCGTGTGGAAGAATTGTTCAAACGTAACGGCTGGACATTAACCGAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAgg < 1:598713/243‑1 (MQ=255) tttCCCGCCCGAATAACTGGCCGCGTGTGGAAGAATTGTTCAAACGTAACGGCTGGACATTAACCGAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGt < 1:21433/250‑1 (MQ=255) ttCCCGCCCGAATAACTGGCCGCGTGTGGAAGAATTGTTCAAACGTAACGGCTGGACATTAACCGAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTg < 1:412572/251‑1 (MQ=255) ccccgAATAACTGGCCGCGTGTGGAAGAAGTGTTCAAGCGTAACGGCTGGACATTAACCGAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAC‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAgcgc < 1:186234/250‑1 (MQ=255) tgGAAGAATTGTTCAAACGTAACGGCTGGACATTAACCGAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAAccc > 1:360001/1‑246 (MQ=255) aaTTGTTCAAACGTAACGGCTGGACATTAACCGAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGcc < 1:372760/250‑1 (MQ=255) gTTCAAACGTAACGGCTGGACATTAACCGAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAgcgc > 1:315458/1‑220 (MQ=255) cGGCTGGACATTAACCGAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATaaa > 1:184549/1‑250 (MQ=255) cGGCTGGACATTAACCGAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATaaa > 1:870235/1‑250 (MQ=255) gCTGGACATTAACCGAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAAc > 1:719745/1‑220 (MQ=255) aCATTAACCGAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAACCCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAAc < 1:246566/250‑1 (MQ=255) aCATTAACCGAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGc > 1:233980/1‑233 (MQ=255) aCATTAACCGAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACaa < 1:14984/251‑1 (MQ=255) aCATTAACCGAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACaa < 1:367986/251‑1 (MQ=255) gAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCgtt > 1:741336/1‑251 (MQ=255) aaTTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATa < 1:311955/231‑1 (MQ=255) aaTTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCgttg < 1:753390/251‑1 (MQ=255) aaTTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCgttg > 1:228715/1‑251 (MQ=255) aTTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAgcg > 1:561613/1‑189 (MQ=255) ttACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCgttgtt > 1:642760/1‑251 (MQ=255) aCATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAAc > 1:133198/1‑239 (MQ=255) aCATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTAt > 1:496652/1‑251 (MQ=255) ccgccATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCGTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTAGTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGa < 1:287155/250‑1 (MQ=255) ccATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTGTGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGa > 1:688876/1‑163 (MQ=255) ccGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACAt < 1:664106/215‑1 (MQ=255) gaagaaACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGt > 1:660501/1‑149 (MQ=255) aagaaACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTa < 1:157677/251‑1 (MQ=255) aagaaACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCATTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTa < 1:69029/251‑1 (MQ=255) gaaACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAag > 1:611328/1‑251 (MQ=255) aaaCATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCgttgtt < 1:876771/214‑1 (MQ=255) aCATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTATAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGc < 1:443474/251‑1 (MQ=255) aCATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAagag > 1:850613/1‑250 (MQ=255) aCATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGc < 1:616529/251‑1 (MQ=255) aCATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGc < 1:487246/251‑1 (MQ=255) aCATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGc < 1:77113/251‑1 (MQ=255) cATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAAc > 1:593100/1‑192 (MQ=255) aTTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGc < 1:572448/249‑1 (MQ=255) aCGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTAtt < 1:884943/251‑1 (MQ=255) gcgcAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAAcc > 1:742620/1‑158 (MQ=255) cgcAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATttg < 1:618026/250‑1 (MQ=255) cgcAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATttg < 1:842964/250‑1 (MQ=255) gcAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAAc < 1:578298/184‑1 (MQ=255) cAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATttgttg < 1:635812/251‑1 (MQ=255) cAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATttgttg > 1:234081/1‑251 (MQ=255) cAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCAGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATttgttg > 1:66765/1‑251 (MQ=255) tGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACaa > 1:725418/1‑187 (MQ=255) tGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGaaa > 1:467876/1‑251 (MQ=255) gCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAAc > 1:460687/1‑150 (MQ=255) gCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGc > 1:848477/1‑237 (MQ=255) gCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAaat > 1:235608/1‑251 (MQ=255) gTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGaaaaa > 1:789068/1‑251 (MQ=255) gTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGaaaa < 1:485194/250‑1 (MQ=255) tgtgtaaatagcgCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAC‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAg < 1:808383/239‑1 (MQ=255) atttatGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGc < 1:647562/223‑1 (MQ=255) atttatGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTg > 1:241301/1‑251 (MQ=255) tatGCGAGCCGCACGGCGCGGTGGCGTATGA‑GTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATg < 1:503214/188‑1 (MQ=255) gCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATcc > 1:342982/1‑175 (MQ=255) gTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGAttt > 1:506102/1‑251 (MQ=255) gTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGATTTTGACCGCACttt > 1:417616/1‑251 (MQ=255) gTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGATTTTGACCGCACt < 1:543634/249‑1 (MQ=255) tGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGATTTTGACCGCACtttt > 1:347952/1‑251 (MQ=255) aaaCAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGATTTTGACCGCACTTTTCTTAc < 1:573059/251‑1 (MQ=255) aaaCAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGATTTTGACCGCACTTTTCTTAc < 1:517995/251‑1 (MQ=255) ggATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGt < 1:494594/69‑1 (MQ=255) gATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGa < 1:333869/143‑1 (MQ=255) tACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGATTTTGACCGCACTTTTCTTACTGCCTATGAc < 1:519318/251‑1 (MQ=255) tACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGATTTTGACCGCACTTTTCTTACTGCCTATGAc < 1:58083/251‑1 (MQ=255) aCAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGATTTTGACCGCACTTTTCTTACTGCCTATGa > 1:464048/1‑249 (MQ=255) aa‑CCGGTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGATTTTGACCGCACTTTTCTTACTGCCTATGACTACCCTCATCGCt < 1:813555/251‑1 (MQ=255) gTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGATTTTGACCGCACTTTTCTTACTGCCTATGACTAccc < 1:799752/238‑1 (MQ=255) gTTTATTCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGATTTTGACCGCACTTTTCTTACTGCCTATGACTACCCTc < 1:326610/240‑1 (MQ=255) ttCCTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGATTTTGACCGCACTTTTCTTACTGCCTATGAc < 1:814298/228‑1 (MQ=255) ccTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACaa > 1:188598/1‑96 (MQ=255) ccTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGc < 1:203956/147‑1 (MQ=255) ccTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGATTTTGACCGCACTTTTCTTACTGCCTATGACTAccc > 1:484865/1‑231 (MQ=255) ccTTTGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGATTTTGACCGCACTTTTCTTACTGCCTATGACTAccc > 1:872943/1‑231 (MQ=255) ttGCACCGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCTTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGATTTTGACCGCACTTTTCTTACTGCCTATGACTAccc < 1:424691/228‑1 (MQ=255) cGCCCACCCGGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGATTTTGACCGCACTTTTCTTACTGCCTATGACTACCCTCATCGCTTGGGGAAACATTCAAACGccc < 1:180595/251‑1 (MQ=255) | ATGGACGTTTCCCGCCCGAATAACTGGCCACGTGTGGAAGAATTGTTCAAACGTAACGGCTGGACATTAACCGAATTACATTCCGCCGCCATTTCCGATGGGCAAACGGAAGAAACATTACGCGCAATGCACAAACTCGGTTATTTATGCGAGCCGCACGGCGCGGTGGCGTATGAGGTGCTTAAACAGGATTTACAAACGGGTGAAA‑CCGGTTTATTCCTTTGCACCGCCCACCCAGCGAAATTCAAGGAATCTGTTGAGCGCATTCTGGATTTAACCCTGCCATTGCCGGAAGCCTTGGATAAACATAACAAACTGCCGTTGTTATCCGATGAAATGGAAAACGATTTTGCGCAGTTAAGAGCTTATTTGTTGAAATAATACGAAAAAGTGCGGTGACAAAATTCAACGGATTTTGACCGCACTTTTCTTACTGCCTATGACTACCCTCATCGCTTGGGGAAACATTCAAACGCCC > 1/1466689‑1467166 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |