| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,460,458 | C→T | intergenic (‑42207/‑31077) | unknown ← / → unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,460,458 | 0 | C | T | 100.0% | 205.5 / NA | 72 | intergenic (‑42207/‑31077) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (40/32); total (40/32) | |||||||||||
CACTTCTTCTTCGCGCAAAGTTAGATATTCGCCATTTCTTCTGACTAAGGCAAGCCGTCCTTTTTTCGAACGTTTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGCATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCGCTGTCAGGACGAATTATCAAAGTTCCCGACATTTGTGAAATCTGCTGCTTAAATCGTTCCCCCCAAACTTCATTAACCACCTG > 1/1460216‑1460698 | cACTTCTTCTTCGCGCAAAGTTAGATATTCGCCATTTCTTCTGACTAAGGCAAGCCGTCCTTTTTTCGAACGTTTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTa < 1:60606/251‑1 (MQ=255) aCTTCTTCTTCGCGCAAAGTTAGATATTCGCCATTTCTTCTGACTAAGGCAAGCCGTCCTTTTTTCGAACGTTTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTAt < 1:279909/251‑1 (MQ=255) cttcttcttCGCGCAAAGTTAGATATTCGCCATTTCTTCTGACTAAGGCAAGCCGTCCTTTTTTCGAACGTTTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTTCCTGCAATACTCACCGCACTTGCCTTCATCGCCGAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTAtg > 1:579623/1‑251 (MQ=255) cttcttcttCGCGCAAAGTTAGATATTCGCCATTTCTTCTGACTAAGGCAAGCCGTCCTTTTTTCGAACGTTTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTAtg < 1:893053/251‑1 (MQ=255) ttcttcGCGCAAAGTTAGATATTCGCCATTTCTTCTGACTAAGGCAAGCCGTCCTTTTTTCGAACGTTTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTAtgtgtg < 1:763253/251‑1 (MQ=255) cttcGCGCAAAGTTAGATATTCGCCATTTCTTCTGACTAAGGCAAGCCGTCCTTTTTTCGAACGTTTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTc < 1:566665/251‑1 (MQ=255) aaGTTAGATATTCGCCATTTCTTCTGACTAAGGCAAGCCGTCCTTTTTTCGAACGTTTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTAtg < 1:278716/236‑1 (MQ=255) aaGTTAGATATTCGCCATTTCTTCTGACTAAGGCAAGCCGTCCTTTTTTCGAACGTTTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGta > 1:548702/1‑251 (MQ=255) gTTAGATATTCGCCATTTCTTCTGACTAAGGCAAGCCGTCCTTTTTTCGAACGTTTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGtata > 1:47011/1‑251 (MQ=255) ttAGATATTCGCCATTTCTTCTGACTAAGGCAAGCCGTCCTTTTTTCGAACG‑TTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTAtaa < 1:227441/250‑1 (MQ=255) atatTCGCCATTTCTTCTGACTAAGGCAAGCCGTCCTTTTTTCGAACGTTTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTAtaatta < 1:841388/250‑1 (MQ=255) ttcttcTGACTAAGGCAAGCCGTCCTTTTTTCGAACGTTTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCGCTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAAACCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATccccc < 1:897099/251‑1 (MQ=255) cttctGACTAAGGCAAGCCGTCCTTTTTTCGAACGTTTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTAtgtg > 1:592012/1‑218 (MQ=255) ctGACTAAGGCAAGCCGTCCTTTTTTCGAACGTTTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAAt < 1:831778/251‑1 (MQ=255) aaGGCAAGCCGTCCTTTTTTCGAACGTTTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAg > 1:272291/1‑220 (MQ=255) aaGGCAAGCCGTCCTTTTTTCGAACGTTTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACg > 1:314609/1‑251 (MQ=255) cGTCCTTTTTTCGAACGTTTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATc < 1:623380/251‑1 (MQ=255) tttttCCGCACCGGTAACGGGATCTTTATATACATTACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTAtaatta > 1:489271/1‑202 (MQ=255) tttttCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAAc < 1:86766/251‑1 (MQ=255) aCGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCt < 1:494215/251‑1 (MQ=255) aCGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCt < 1:854172/251‑1 (MQ=255) tCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTAtgtgtg < 1:553122/163‑1 (MQ=255) tCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTAt < 1:337303/158‑1 (MQ=255) tCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTc > 1:660389/1‑184 (MQ=255) tCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAAt < 1:431761/197‑1 (MQ=255) tCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTc > 1:80781/1‑244 (MQ=255) tCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTc > 1:871915/1‑250 (MQ=255) cTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGt < 1:732400/155‑1 (MQ=255) cTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTAtgtgtg > 1:52122/1‑162 (MQ=255) cTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCaa < 1:637235/209‑1 (MQ=255) cTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACta > 1:302500/1‑236 (MQ=255) cTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCtt > 1:749764/1‑245 (MQ=255) cTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCg > 1:143055/1‑251 (MQ=255) cTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCg > 1:30307/1‑251 (MQ=255) atataCATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAAccc > 1:175745/1‑226 (MQ=255) cATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCa > 1:163727/1‑251 (MQ=255) tCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACtatttatt < 1:281174/231‑1 (MQ=255) cGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACta < 1:150058/222‑1 (MQ=255) cGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAACCaa > 1:388996/1‑251 (MQ=255) gCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTAtg > 1:404934/1‑136 (MQ=255) cTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATAc > 1:887119/1‑196 (MQ=255) gCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTc > 1:351207/1‑138 (MQ=255) ccTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTTACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGAc < 1:450171/250‑1 (MQ=255) ccGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATcc < 1:280257/152‑1 (MQ=255) gCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTAtgtgtg > 1:27742/1‑124 (MQ=255) tCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTAtaatt < 1:659043/130‑1 (MQ=255) gcccaTCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCg > 1:610406/1‑247 (MQ=255) atcatGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTc > 1:226717/1‑187 (MQ=255) atcatGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATcc > 1:834310/1‑210 (MQ=255) atcatGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCGCTGTCAgg > 1:1308/1‑251 (MQ=255) cGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATcc > 1:456228/1‑81 (MQ=255) cGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCGCTGTCAGGACGAATTAt > 1:776728/1‑251 (MQ=255) ggTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTtat > 1:370602/1‑153 (MQ=255) aaCCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCGCTGTCAGGACGAATTATCAAAg < 1:391101/251‑1 (MQ=255) gCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAata > 1:560104/1‑185 (MQ=255) cTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCGCTGTCAGGACGAATTATCAAAGTTCCCGACATTTGTGAAAt > 1:762328/1‑250 (MQ=255) cccATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCGCTGTCAGGACGAATTATCAAAGTTCCCGACATTTGTGAAAt > 1:541178/1‑248 (MQ=255) aTTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCGCTGTCAGGACGAATTATCAAAGTTCCCGACATTTGTGAAATCTGCTGCTTAAATc < 1:115227/251‑1 (MQ=255) aTTCACATTATCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCGCTGTCAGGACGAATTATCAAAGTTCCCGACATTTGTGAAATCTGCTGCTTAAATc < 1:499167/251‑1 (MQ=255) aTCCACGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCGCTGTCAGGACGAATTATCAAAGtt > 1:354817/1‑211 (MQ=255) aCGCTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCGCTGTCAGGACGAATTATCAAAGTTCCCGACATTTGTGAAATCTGCTGCTTAAATCGTTCCCCCCAAAc < 1:14668/251‑1 (MQ=255) cTGAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCGCTGTCAGGACGAATTATCAAAGTTCCCGACATTTGTGAAATCTGCTGCTTAAATCGTTCCCCCCAAACtt > 1:477497/1‑250 (MQ=255) gAATCCATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAAc < 1:847041/101‑1 (MQ=255) cATGTGCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCGCTGTCAGGACGAATTATCAAAGTTCCCGACATTTGTGAAATCTGCTGCTTAAATCGTTCCCCCCAAACTTCATTAacc < 1:345444/251‑1 (MQ=255) gtgCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCGCTGTCAGGACGAATTATCAAAGTTCCCGACATTTGTGAAATCTGCTGCTTAAATCGTTCCCCCCAAACTTCATTAaccac > 1:869420/1‑250 (MQ=255) tgCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCt > 1:313585/1‑108 (MQ=255) tgCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCGCTGTCAGGACGAATTATCAAAGTTCCCGACATTTGTGAAATCTGCTGCTTAAATCGTTCCCCCCAAACt > 1:76400/1‑238 (MQ=255) tgCCATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCGCTGTCAGGACGAATTATCAAAGTTCCCGACATTTGTGAAATCTGCTGCTTAAATCGTTCCCCCCAAACTTCATTAaccac > 1:684635/1‑249 (MQ=255) ccATGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCGCTGTCAGGACGAATTATCAAAGTTCCCGACATTTGTGAAATCTGCTGCTTAAATCGTTCCCCCCAAACTTCATTAACCACCTg > 1:894795/1‑250 (MQ=255) tGACAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTAc < 1:306733/136‑1 (MQ=255) aCAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTc > 1:412536/1‑100 (MQ=255) aCAGTATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCGc < 1:59820/163‑1 (MQ=255) | CACTTCTTCTTCGCGCAAAGTTAGATATTCGCCATTTCTTCTGACTAAGGCAAGCCGTCCTTTTTTCGAACGTTTTTCCGCACCGGTAACGGGATCTTTATATACATCACGCCATTTGCCTGCAACACTCACCGCACTTGCCTTCATCGCCCAGCCCATCATGTCACGGTTAACCTGTTGCAACAAGCCGCCTCCCATACCGAAATTCACATTATCCACGCTGAATCCATGTGCCATGACAGCATCCAGTATGTGTGTCAATGAAGTATAATTAATTCCATCCCCCTGAATGACACGAATGCAATCCGGCAATACTTTATAACCCTTACTATTTATTCTTGTTCCGAACTTTTCAGCCAAAATATCCAGTACGCGACAAATTACCGTGCCCGGTTCACCGCTGTCAGGACGAATTATCAAAGTTCCCGACATTTGTGAAATCTGCTGCTTAAATCGTTCCCCCCAAACTTCATTAACCACCTG > 1/1460216‑1460698 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |