| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,457,888 | C→G | intergenic (‑39637/‑33647) | unknown ← / → unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,457,888 | 0 | C | G | 100.0% | 214.3 / NA | 70 | intergenic (‑39637/‑33647) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (31/39); total (31/39) | |||||||||||
CTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTTCCGGCTTGAA‑TTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTACTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAGGTGCGCCACTAATGAAAGCCGATTTTGCAGCAAAAAATCCGCAGGTTCTGACCGCACTTAACCGCCTCGCCAATCGTATTTCCGAA > 1/1457645‑1458132 | ctcCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTTCCGGCTTGAA‑TTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATtagtttagtt > 1:262430/1‑251 (MQ=255) ccctgaacccccttaccagttgaaaaaaCAATTCCTGGCGAAACAGTTCCGGTTTAAT‑TTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTc < 1:524181/226‑1 (MQ=255) aaCCATTTATCAGCTGAGAAAACAATTCCTGGCGGAACAGTTCCGGTTTAAT‑TTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTg < 1:490782/251‑1 (MQ=255) cTTATCAGCTGAGAAAACAATTCCGGGCGAAACAGTTCCGGTTTAAA‑TTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATtagtttagtt < 1:3881/239‑1 (MQ=255) ttgaatAAACATTTACTGGCGGAACAGTTCCGGTTTGAT‑TTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAAc < 1:547161/245‑1 (MQ=255) cTGAGTAAACAATTACTGGCGAAACATTCCCGGCTTGAA‑TTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAAcc < 1:460958/251‑1 (MQ=255) cTGAGAAAACAATTACTGGCGGAACATTTCCGGTTTGAA‑TTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAAc < 1:826530/250‑1 (MQ=255) gAGTAAACAATTACTGGCGGAACAGTTCCGGCTTGAA‑TTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAAc > 1:46748/1‑248 (MQ=255) aaaaaaattattggggaaaCAGTTCCGGC‑TGAATTTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCtt < 1:635245/234‑1 (MQ=255) aaattagtggggaaaCAGTTCGGGTTTGAT‑TTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCg < 1:532941/238‑1 (MQ=255) aaTTACGGGCGGAACAGTTCCGGTTTAAT‑TTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGt < 1:180647/251‑1 (MQ=255) cgggCGGAACAGTCCCGGCTTGAA‑TTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATAc < 1:68268/249‑1 (MQ=255) cgggCGAAACAGTTCCGGTTTAAT‑TTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATAc < 1:175743/249‑1 (MQ=255) ggCGGAACAGTTCCGGCTTGAA‑TTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACgg > 1:576540/1‑251 (MQ=255) gAACAGTTCCGGTTTGAA‑TTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGt < 1:831791/250‑1 (MQ=255) gTTCCGGCTTGAA‑TTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTc > 1:468864/1‑250 (MQ=255) atCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGAtt > 1:667260/1‑234 (MQ=255) tCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAAcc < 1:901726/192‑1 (MQ=255) tCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTa > 1:216417/1‑251 (MQ=255) cAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATAtt < 1:27956/177‑1 (MQ=255) cAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATAc < 1:158850/206‑1 (MQ=255) cAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTAc < 1:73718/251‑1 (MQ=255) aaaaTACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTa > 1:307257/1‑249 (MQ=255) cTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAg > 1:341463/1‑251 (MQ=255) aTGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGttt < 1:240694/157‑1 (MQ=255) aTGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCAccc < 1:207543/174‑1 (MQ=255) aTGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTc < 1:799594/206‑1 (MQ=255) cATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATAc > 1:348862/1‑193 (MQ=255) aGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTg < 1:826319/167‑1 (MQ=255) gAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATAc < 1:123424/183‑1 (MQ=255) aaaGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATc < 1:416916/250‑1 (MQ=255) aaaGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCa > 1:435523/1‑251 (MQ=255) aaaGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCa > 1:420524/1‑251 (MQ=255) agCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAaaca > 1:125474/1‑240 (MQ=255) agCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATc < 1:690143/245‑1 (MQ=255) agCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTc > 1:857663/1‑250 (MQ=255) gAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATAc < 1:850838/169‑1 (MQ=255) acacATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTc < 1:470296/174‑1 (MQ=255) acacATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGAt > 1:77953/1‑189 (MQ=255) acacATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTc < 1:327730/237‑1 (MQ=255) acacATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAga > 1:583701/1‑251 (MQ=255) acacATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAga > 1:725171/1‑251 (MQ=255) cacaTGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAgac < 1:827319/251‑1 (MQ=255) ggCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACt < 1:506139/203‑1 (MQ=255) caacaaTCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAAttt < 1:24468/250‑1 (MQ=255) acaaTCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTAtt > 1:85715/1‑251 (MQ=255) caaTCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTc < 1:738203/251‑1 (MQ=255) aTTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACAtt > 1:231225/1‑233 (MQ=255) aTTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTAt > 1:547176/1‑251 (MQ=255) tACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCaa < 1:525730/251‑1 (MQ=255) catcatGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAgg < 1:818342/251‑1 (MQ=255) catcatGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAgg < 1:70151/251‑1 (MQ=255) gCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATCAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAGGTGCGCCAc < 1:440554/250‑1 (MQ=255) aGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAGGTGCGCCACTaa > 1:736702/1‑251 (MQ=255) ggTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAAc < 1:876138/106‑1 (MQ=255) ggTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAGGTGCGCCACTAAt > 1:163211/1‑251 (MQ=255) tGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAGGTGCGCCACTAATg < 1:472017/250‑1 (MQ=255) gCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAGGTGCGCCACTAATGAAAGCCGATTTTgca > 1:561356/1‑251 (MQ=255) acacTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTAc < 1:388453/146‑1 (MQ=255) cacTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAGGTGCGCCACTAATGAAAGCCGATTTTGCAGCaaaa > 1:418443/1‑251 (MQ=255) tcgatcgaGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAGGTGCGCCACTAATGAAAGCCGATTTTGCAGCAAAAAATCCGCAGGtt < 1:696226/251‑1 (MQ=255) ggCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCGCCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACAt < 1:644468/141‑1 (MQ=255) gCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAGGTGCGCCACTAATGAAAGCCGATTTTGCAGCAAAAAATCCGCAGGTTCTGACCGCACTTaa > 1:207179/1‑250 (MQ=255) gCTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAGGTGCGCCACTAATGAAAGCCGATTTTGCAGCAAAAAATCCGCAGGTTCTGACCGCACTTaa > 1:857517/1‑250 (MQ=255) cTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTcaac < 1:684418/85‑1 (MQ=255) cTATAAAGGAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAGGTGCGCCACTAATGAAAGCCGATTTTGCAGCAAAAAATCCGCAGGTTCTGACCGCACTTAAc > 1:423928/1‑250 (MQ=255) gAATAAAATCACAAGGCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAGGTGCGCCACTAATGAAAGCCGATTTTGCAGCAAAAAATCCGCAGGTTCTGACCGCACTTAACCGCCTCGc > 1:472300/1‑250 (MQ=255) ggCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAGGTGCGCCACTAATGAAAGCCGATTATGCAGCAAAAAATCCGCAGGTTCTGACCGCACTTAAc > 1:868065/1‑228 (MQ=255) gCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAgg > 1:411598/1‑166 (MQ=255) gCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAGGTGCGCCACTAATGAAAGCCGATTTTGCAGCAAAAAATCCGCAGGTTCTGACCGCACTTAACCGCCTCGCCAATCGTATTTc > 1:245905/1‑247 (MQ=255) gCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAGGTGCGCCACTAATGAAAGCCGATTTTGCAGCAAAAAATCCGCAGGTTCTGACCGCACTTAACCGCCTCGCCAATCGTATTTCCGaa > 1:316814/1‑251 (MQ=255) gCATTAGTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAGGTGCGCCACTAATGAAAGCCGATTTTGCAGCAAAAAATCCGCAGGTTCTGACCGCACTTAACCGCCTCGCCAATCGTATTTCCGaa > 1:727400/1‑251 (MQ=255) | CTCCTGAAACCACTTATCAGCTGAGTAAACAATTACTGGCGGAACAGTTCCGGCTTGAA‑TTTTTACCGCCGATGGCATATCAAAATACCTATGCATTAGCAGTGAAAGAAGCCTATGGAGCAACACATGGGCTTGCAACAATCAGCGATTTACATCATGTGGCAGGTGACATTCGCGCCGGCTTCACACTGGAATTTCTCGATCGAGTCGATGGCTATAAAGGAATAAAATCACAAGGCATTACTTTAGTTCATATTGTCACCCTTGAACCTGCTTTGCGTTATACGGCGTTACTCAACAATAAAATTGATTTAATCGAAGCATTTTCTACTGACGCAGAACTCAAACAACATCAGCTCCGCTTACTGAAAGACGACATTAATTTATTCCCTGCCTATCAAGGTGCGCCACTAATGAAAGCCGATTTTGCAGCAAAAAATCCGCAGGTTCTGACCGCACTTAACCGCCTCGCCAATCGTATTTCCGAA > 1/1457645‑1458132 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |