Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,439,327 G→A intergenic (‑21076/‑52208) unknown ← / → unknown SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,439,3270GA100.0% 61.6 / NA 23intergenic (‑21076/‑52208)unknown/unknownSSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (10/13);  total (10/13)

ATTTTCAATAGACTGCAAGTTTCTTTTTCCACCTATTAAAGTTACAAAATTAAACATGCTATTTTCTGGAATTCATGCCTCTATTGCGGCTTTAGAACAAATACTAATTTTATGGGTTGGTGAAACCCTAGTAATTGAAAATACAATGACATTGGGTATGTATGTTGCTTTTAATTCTTACCGAGGTTTATTTTCTTCACGTATGACAAACCTAATTAATATTTTCTTCAATATAAGAGTTTTAGCTCTGTATAGAGAACGAATTGCAGATATAGCACTAAATGAAGCAGAAGAAGATACTTATCAGAATTTGACGAATATACCTAAAAAAGTAGCAACACTCGAACTAAAGAATCTTACATTCTCTTATAATCAATTTGATAAACCGATAATAAAAGATATTAGTTTAATCATTCCTGCAGGTAAAAGTGTAGCTATTAAAGCGCCATCAGGCTTTGGAAAAACAACATTACTTAAGT  >  1/1439089‑1439567
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                
attTTCAATAGACTGCAAGTTTCTTTTTCCACCTATTAAAGTTACAAAATTAAACATGCTATTTTCTGGAATTCATGCCTCTATTGCGGCTTTAGAACAAATACTAATTTTATGGGTTGGTGAAACCCTAGTAATTGAAAATACAATGACATTGGGTATGTATGTTGCTTTTAATTCTTACCGAGGTTTATTTTCTTCACGTATGACAAACCTAATTAATATTTTCTTCAATATAAGAATTTTAGct                                                                                                                                                                                                                                          <  1:395891/247‑1 (MQ=255)
                       tttttCCACCTATTAAAGTTACAAAATTAAACATGCTATTTTCTGGAATTCATGCCTCTATTGCGGCTTTAGAACAAATACTAATTTTATGGGTTGGTGAAACCCTAGTAATTGAAAATACAATGACATTGGGTATGTATGTTGCTTTTAATTCTTACCGAGGTTTATTTTCTTCACGTATGACAAACCTAATTAATATTTTCTTCAATATAAGAATTTTAGCTCTGTATAGAGAACGAATTGCAGAtata                                                                                                                                                                                                               <  1:634136/251‑1 (MQ=255)
                                cTATTAAAGTTACAAAATTAAACATGCTATTTTCTGGAATTCATGCCTCTATTGCGGCTTTAGAACAAATACTAATTTTATGGGTTGGTGAAACCCTAGTAATTGAAAATACAATGACATTGGGTATGTATGTTGCTTTTAATTCTTACCGAGGTTTATTTTCTTCACGTATGACAAACCTAATTAATATTTTCTTCAATATAAGAATTTTAGCTCTGTATag                                                                                                                                                                                                                                  >  1:854740/1‑223 (MQ=255)
                                cTATTAAAGTTACAAAATTAAACATGCTATTTTCTGGAATTCATGCCTCTATTGCGGCTTTAGAACAAATACTAATTTTATGGGTTGGTGAAACCCTAGTAATTGAAAATACAATGACATTGGGTATGTATGTTGCTTTTAATTCTTACCGAGGTTTATTTTCTTCACGTATGACAAACCTAATTAATATTTTCTTCAATATAAGAATTTTAGCTCTGTATag                                                                                                                                                                                                                                  >  1:472630/1‑223 (MQ=255)
                                              aaaTTAAACATGCTATTTTCTGGAATTCATGCCTCTATTGCGGCTTTAGAACAAATACTAATTTTATGGGTTGGTGAAACCCTAGTAATTGAAAATACAATGACATTGGGTATGTATGTTGCTTTTAATTCTTACCGAGGTTTATTTTCTTCACGTATGACAAACCTAATTAATATTTTCTTCAATATAAGAATTTTAGCTCTGTATAgaga                                                                                                                                                                                                                               <  1:390357/212‑1 (MQ=255)
                                                                           tGCCTCTATTGCGGCTTTAGAACAAATACTAATTTTATGGGTTGGTGAAACCCTAGTAATTGAAAATACAATGACATTGGGTATGTATGTTGCTTTTAATTCTTACCGAGGTTTATTTTCTTCACGTATGACAAACCTAATTAATATTTTCTTCAATATAAGAATTTTAGCTCTGTATAGAGAACGAAtt                                                                                                                                                                                                                        >  1:240045/1‑190 (MQ=255)
                                                                                                     tACTAATTTTATGGGTTGGTGAAACCCTAGTAATTGAAAATACAATGACATTGGGTATGTATGTTGCTTTTAATTCTTACCGAGGTTTATTTTCTTCACGTATGACAAACCTAATTAATATTTTCTTCAATATAAGAATTTTAGCTCTGTATAGAGAACGAATTGCAGATATAGCACTAAATGAAGCAGAAGAAGATACTTATCAGAATTTGACGAATATACCTAAAAAAGTAGCAACACTCGAACTAAAg                                                                                                                                 <  1:567924/251‑1 (MQ=255)
                                                                                                                                               cAATGACATTGGGTATGTATGTTGCTTTTAATTCTTACCGAGGTTTATTTTCTTCACGTATGACAAACCTAATTAATATTTTCTTCAATATAAGAATTTTAGCTCTGTATAGAGAACGAATTGCAGATATAGCACTAAATGAAGCAGAAGAAGAt                                                                                                                                                                                       >  1:813922/1‑155 (MQ=255)
                                                                                                                                                   gACATTGGGTATGTATGTTGCTTTTAATTCTTACCGAGGTTTATTTTCTTCACGTATGACAAACCTAATTAATATTTTCTTCAATATAAGAATTTTAGCTCTGTATaga                                                                                                                                                                                                                                 <  1:75549/109‑1 (MQ=255)
                                                                                                                                                   gACATTGGGTATGTATGTTGCTTTTAATTCTTACCGAGGTTTATTTTCTTCACGTATGACAAACCTAATTAATATTTTCTTCAATATAAGAATTTTAGCTCTGTATAGAGAACGAATTGCAGATATAGCACTAAAt                                                                                                                                                                                                      >  1:845982/1‑136 (MQ=255)
                                                                                                                                                           gtatgtatGTTGCTTTTAATTCTTACCGAGGTTTATTTTCTTCACGTATGACAAACCTAATTAATATTTTCTTCAATATAAGAATTTTAGCTCTGTATAGAGAACGAATTGCAGATATAGCACTAAATGAAGCAGAAGAAGATACTTATCAGAATTTGACGAATATAcc                                                                                                                                                             >  1:800370/1‑169 (MQ=255)
                                                                                                                                                                                         gTTTATTTTCTTCACGTATGACAAACCTAATTAATATTTTCTTCAATATAAGAATTTTAGCTCTGTATAGAGAACGAATTGCAGATATAGCACTAAATGAAGCAGAAGAAGATACTTATCAGAATTTGACGAATATACCTAAAAAAGTAGCAACACTCGAACTAAAGAATCTTACATTCTCTTATAATCAATTTGATAAACCGATAATAAAAGATATTAGTTTAATCATTCCTGCAGGTAAAAGTGTAg                                               <  1:802778/249‑1 (MQ=255)
                                                                                                                                                                                         gTTTATTTTCTTCACGTATGACAAACCTAATTAATATTTTCTTCAATATAAGAATTTTAGCTCTGTATAGAGAACGAATTGCAGATATAGCACTAAATGAAGCAGAAGAAGATACTTATCAGAATTTGACGAATATACCTAAAAAAGTAGCAACACTCGAACTAAAGAATCTTACATTCTCTTATAATCAATTTGATAAACCGATAATAAAAGATATTAGTTTAATCATTCCTGCAGGTAAAAGTGTAGc                                              <  1:815645/250‑1 (MQ=255)
                                                                                                                                                                                                          aTGACAAACCTAATTAATATTTTCTTCAATATAAGAATTTTAGCTCTGTATAgaga                                                                                                                                                                                                                               >  1:90767/1‑56 (MQ=255)
                                                                                                                                                                                                           tGACAAACCTAATTAATATTTTCTTCAATATAAGAATTTTAGCTCTGTATAGAGAACGAATTGCAGATATAGCACTAAATGAAGCAGAAGAAGATACTTATCAGAATTTGACGAATATGCCTAAAAAAGTAGCAACACTCGAACTAAAGAATCTTACATTCTCTTATAATCAATTTGATAAACCGATAATAAAAGATATTAGTTTAATCATTCCTGCAGGTAAAAGTGTAGCTATTAAAGCGCCATCAGGc                           <  1:262767/251‑1 (MQ=255)
                                                                                                                                                                                                           tGACAAACCTAATTAATATTTTCTTCAATATAAGAATTTTAGCTCTGTATAGAGAACGAATTGCAGATATAGCACTAAATGAAGCAGAAGAAGATACTTATCAGAATTTGACGAATATACCTAAAAAAGTAGCAACACTCGAACTAAAGAATCTTACATTCTCTTATAATCAATTTGATAAACCGATAATAAAAGATATTAGTTTAATCATTCCTGCAGGTAAAAGTGTAGCTATTAAAGCGCCATCAgg                            >  1:790441/1‑250 (MQ=255)
                                                                                                                                                                                                                  ccTAATTAATATTTTCTTCAATATAAGAATTTTAGCTCTGTATAGAGAACGAATTGCAGATATAGCACTAAATGAAGCAGAAGAAGATACTTATCAGaa                                                                                                                                                                            <  1:395865/99‑1 (MQ=255)
                                                                                                                                                                                                                  ccTAATTAATATTTTCTTCAATATAAGAATTTTAGCTCTGTATAGAGAACGAATTGCAGATATAGCACTAAATGAAGCAGAAGAAGATACTTATCAGAATTTGACGAATATACCTAAAAAAGTAGCAACACTCGAACTAAAGAATCTTACATTCTCTTATAATc                                                                                                           >  1:332188/1‑164 (MQ=255)
                                                                                                                                                                                                                      attaatATTTTCTTCAATATAAGAATTTTAGCTCTGTATAGAGAACGAATTGCAGATATAGCACTAAATGAAGCAGAAGAAGATACTTATCAGAATTTGACGAATATACCTAAAAAAGTAGCAACACTCGAACTAAAGAATCTTACATTCTCTTATAATCAATTTGATAAACCGATAATAAAAGATATTAGTTTAATCATTCCTGCAGGTAAAAGTGTAGCTATTAAAGCGCCATCAGGCTTTGGAAAaac                <  1:883530/251‑1 (MQ=255)
                                                                                                                                                                                                                       ttaatATTTTCTTCAATATAAGAATTTTAGCTCTGTATAGAGAACGAATTGCAGATATAGCACTAAATGAAGCAGAAGAAGATACTTATCAGAATTTGACGAATATACCTAAAAAAGTAGCAACACTCGAACTAAAGAATCTTACATTCTCTTATaa                                                                                                             <  1:409839/157‑1 (MQ=255)
                                                                                                                                                                                                                                    cAATATAAGAATTTTAGCTCTGTATAGAGAACGAATTGCAGATATAGCACTAAATGAAGCAGAAGAAGATACTTATCAGAATTTGACGAATATACCTAAAAAAGTAGCAACACTCGAACTAAAGAATCTTACATTCTCTTATAATCAATTTGATAAACCGATAATAAAAGATATTAGTTTAATCATTCCTGCAGGTAAAAGTGTAGCTATTAAAGCGCCATCAGGCTTTGGAAAAACAACATTACTTAAGt  <  1:530561/251‑1 (MQ=255)
                                                                                                                                                                                                                                      atatAAGAATTTTAGCTCTGTATAGCGAACGAATTGCAGATATAGCACTAAATGAAGCAGAAGAAGAt                                                                                                                                                                                       >  1:610916/1‑68 (MQ=255)
                                                                                                                                                                                                                                      atatAAGAATTTTAGCTCTGTATAGAGAACGAATTGCAGATATAGCACTAAATGAAGCAGAAGAAGATACTTATCAGAATTTGACGAATATACCTAAAAAAGTAGCAACACTCGAACTAAAGAATCTTACATtc                                                                                                                     <  1:95986/134‑1 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                
ATTTTCAATAGACTGCAAGTTTCTTTTTCCACCTATTAAAGTTACAAAATTAAACATGCTATTTTCTGGAATTCATGCCTCTATTGCGGCTTTAGAACAAATACTAATTTTATGGGTTGGTGAAACCCTAGTAATTGAAAATACAATGACATTGGGTATGTATGTTGCTTTTAATTCTTACCGAGGTTTATTTTCTTCACGTATGACAAACCTAATTAATATTTTCTTCAATATAAGAGTTTTAGCTCTGTATAGAGAACGAATTGCAGATATAGCACTAAATGAAGCAGAAGAAGATACTTATCAGAATTTGACGAATATACCTAAAAAAGTAGCAACACTCGAACTAAAGAATCTTACATTCTCTTATAATCAATTTGATAAACCGATAATAAAAGATATTAGTTTAATCATTCCTGCAGGTAAAAGTGTAGCTATTAAAGCGCCATCAGGCTTTGGAAAAACAACATTACTTAAGT  >  1/1439089‑1439567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑