Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,438,404 C→T intergenic (‑20153/‑53131) unknown ← / → unknown SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,438,4040CT100.0% 58.9 / NA 22intergenic (‑20153/‑53131)unknown/unknownSSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Ser‑GGA
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (8/14);  total (8/14)

CAACACCGCCATTTGCCATGGGGTTTCCCATTTATCCGGTGCAGAAGTCATGGCAACGGATCTGCGCGCTTCTATCAGCTTAGTGCTGGCAGGCTGTATCGCCACCGGTGAAACCATTGTGGATCGTATCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTACCCAAGAAATCTGTTTATAATTGTTTTTATCTTTCGAATTATTATTAATTGTAGTCGGGGCTACAATATTCATTTAGTAGATATAACTTTGGAAAGATTGAAAGCTCCCTGTTTATTTTTGTGTTGGGGGATAAATGAAAACACTTAAGCAAATTTACAGTGGGTGGGAATCGTAGCTGTAAGAAATGGGATTATTACTGGTATAGTTAGTTAGAGGAGATTTGCCAATTAAAGCTTCTTTGTAT  >  1/1438174‑1438648
                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                    
cAACACCGCCATTTGCCATGGGGTTTCCCATTTATCCGGTGCAGAAGTCATGGCAACGGATCTGCGCGCTTCTATCAGCTTAGTGCTGGCAGGCTGTATCGCCACCGGTGAAACCATTGTGGATCGTATCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAAt                                                                                                                                                                                                                                  <  1:245897/251‑1 (MQ=255)
cAACACCGCCATTTGCCATGGGGTTTCCCATTTATCCGGTGCAGAAGTCATGGCAACGGATCTGCGCGCTTCTATCAGCTTAGTGCTGGCAGGCTGTATCGCCACCGGTGAAACCATTGTGGATCGTATCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAAt                                                                                                                                                                                                                                  <  1:36757/251‑1 (MQ=255)
              gCCATGGGGTTTCCCATTTATCCGGTGCAGAAGTCATGGCAACGGATCTGCGCGCTTCTATCAGCTTAGTGCTGGCAGGCTGTATCGCCACCGGTGAAACCATTGTGGATCGTATCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAAt                                                                                                                                                                                                                                  <  1:276125/237‑1 (MQ=255)
                            cATTTATCCGGTGCAGAAGTCATGGCAACGGATCTGCGCGCTTCTATCAGCTTAGTGCTGGCAGGCTGTATCGCCACCGGTGAAACCATTGTGGATCGTATCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAAt                                                                                                                                                                                                                                  <  1:173187/223‑1 (MQ=255)
                                           gAAGTCATGGCAACGGATCTGCGCGCTTCTATCAGCTTAGTGCTGGCAGGCTGTACCGCCACCGGTGAAACCATTGTGGATCGTATCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAATTGTTTTTATCTTTCGAATTATTATTAATTGTAGTCGGGGCTa                                                                                                                                                                                        >  1:481272/1‑250 (MQ=255)
                                             aGTCATGGCAACGGATCTGCGCGCTTCTATCAGCTTAGTGCTGGCAGGCTGTATCGCCACCGGTGAAACCATTGTGGATCGTATCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAATTGTTTTTATCTTTCGAATTATTATTAATTGTAGTCGGGGCTACaa                                                                                                                                                                                     >  1:236014/1‑251 (MQ=255)
                                               tCATGGCAACGGATCTGCGCGCTTCTATCAGCTTAGTGCTGGCAGGCTGTATCGCCACCGGTGAAACCATTGTGGATCGTATCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAATTGTTTTTATCTTTCGAATTATTATTAATTGTAGTCGGGGCTACaa                                                                                                                                                                                     <  1:565666/249‑1 (MQ=255)
                                                  tGGCAACGGATCTGCGCGCTTCTATCAGCTTAGTGCTGGCAGGCTGTATCGCCACCGGTGAAACCATTGTGGATCGTATCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAATTGTTTTTATCTTTCGAATTATTATTAATTGTAGTCGGGGCTACAATATTc                                                                                                                                                                                <  1:447175/251‑1 (MQ=255)
                                                                    cTTCTATCAGCTTAGTGCTGGCAGGCTGTATCGCCACCGGTGAAACCATTGTGGATCGTATCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAATTGTTTTTATCTTTCGAATTATTATTAATTGTAGTCGGGGCTACAATATTCATTTAGTAGATATAACtt                                                                                                                                                              >  1:788973/1‑251 (MQ=255)
                                                                      tCTATCAGCTTAGTGCTGGCAGGCTGTATCGCCACCGGTGAAACCATTGTGGATCGTATCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAg                                                                                                                                                                                                                                                 >  1:765551/1‑166 (MQ=255)
                                                                      tCTATCAGCTTAGTGCTGGCAGGCTGTATCGCCACCGGTGAAACCATTGTGGATCGTATCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAATTGTTTTTATCTTTCGAATTATTATTAATTGt                                                                                                                                                                                                   <  1:748588/212‑1 (MQ=255)
                                                                      tCTATCAGCTTAGTGCTGGCAGGCTGTATCGCCACCGGTGAAACCATTGTGGATCGTATCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAATTGTTTTTATCTTTCGAATTATTATTAATTGTAGTCGGGGCTACAATATTCATTTAGTAGATATAACTTTg                                                                                                                                                            >  1:477490/1‑251 (MQ=255)
                                                                       cTATCAGCTTAGTGCTGGCAGGCTGTATCGCCACCGGTGAAACCATTGTGGATCGTATCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAATTGTTTTTATCTTTCGAATTATTATTAATTGTAGTCGGGGCTACAATATTCATTTAGTAGATATAAc                                                                                                                                                                >  1:742987/1‑246 (MQ=255)
                                                                                       ggCAGGCTGTATCGCCACCGGTGAAACCATTGTGGATCGTATCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAATTGTTTTTATCTTTCGAATTATTATTAATTGTAGTCGGGGCTACAATATTCATTTAGTAGATATAACTTTGGAAAGATTGAAAGc                                                                                                                                              <  1:633372/248‑1 (MQ=255)
                                                                                                          ggTGAAACCATTGTGGATCGTATCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAATTg                                                                                                                                                                                                                                >  1:169416/1‑147 (MQ=255)
                                                                                                                   aTTGTGGATCGTATCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAATTGTTTTTATCTTTCGAATTATTATTAATTGTAGTCGGGGCTACAATATTCAttt                                                                                                                                                                            <  1:179010/190‑1 (MQ=255)
                                                                                                                              gaTCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAATTGTTTTTATCTTTCGAATTATTATTAATTGTAGTCGGGGCTACAATATTCATTTAGTAGATATAACTTTGGAAAGATTGAAAGCTCCCTGtc                                                                                                                                      <  1:253170/216‑2 (MQ=255)
                                                                                                                                    ccATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAATTGTTTTTATCTTTCGAATTATTATTAATTGTAGTCGGGGCTACAATATTCATTTAGTAGATATAACTTTGGaa                                                                                                                                                         >  1:844244/1‑192 (MQ=255)
                                                                                                                                                     aTGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAATTGTTTTTATCTTTCGAATTATTATTAATTGTAGTCGGGGCTACAATATTCATTTAGTAGATATAACTTTGGAAAGATTGAAAGCTCCCTGTTTATTTTTGTGTTGGGGGATAAATGAAAACACTTAAGCAAATTTACAGTGGGTGGGaa                                                                             <  1:156716/251‑1 (MQ=255)
                                                                                                                                                                         cTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTATCCAAGAAATCTGTTTATAATTGTTTTTATCTTTCGAATTATTATTAATTGTAGTCGGGGCTACAATATTCATTTAGTAGATATAACTTTGGAAAGATTGAAAGCTCCCTGTTTATTTTTGTGTTGGGGGATAAATGAAAACACTTAAGCAAATTTACAGTGGGTGGGAATCGTAGCTGTAAGAAATg                                                           <  1:870818/249‑1 (MQ=255)
                                                                                                                                                                                                                             ttaaaattaTCCAAGAAATCTGTTTATAATTGTTTTTATCTTTCGAATTATTATTAATTGTAGTCGGGGCTACAATATTCATTTAGTAGATATAACTTTGGAAAGATTGAAAGCTCCCTGTTTATTTTTGTGTTGGGGGATAAATGAAAACACTTAAGCAAATTTACAGTGGGTGGGAATCGTAGCTGTAAGAAATGGGATTATTACTGGTACAGTTAGTTAGAGGAGATTTGCCAATTAAAGCTTCTTTg     <  1:891421/251‑1 (MQ=255)
                                                                                                                                                                                                                                aaattaTCCAAGAAATCTGTTTATAATTGTTTTTATCTTTCGAATTATTATTAATTGTAGTCGGGGCTACAATATTCATTTAGTAGATATAACTTTGGAAAGATTGAAAGCTCCCTGTTTATTTTTGTGTTGGGGGATAAATGAAAACACTTAAGCAAATTTACAGTGGGTGGGAATCGTAGCTGTAAGAAATGGGATTATTACTGGTACAGTTAGTTAGAGGAGATTTGCCAATTAAAGCTTCTTTGTAt  <  1:443153/251‑1 (MQ=255)
                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                    
CAACACCGCCATTTGCCATGGGGTTTCCCATTTATCCGGTGCAGAAGTCATGGCAACGGATCTGCGCGCTTCTATCAGCTTAGTGCTGGCAGGCTGTATCGCCACCGGTGAAACCATTGTGGATCGTATCTACCATATCGACCGCGGCTATGAACATATTGAAGAAAAGCTCCGCGGCTTAGGCGCTCGTATTGAACGTTTTTCGGAAGAAATAGAATAAATTAAAATTACCCAAGAAATCTGTTTATAATTGTTTTTATCTTTCGAATTATTATTAATTGTAGTCGGGGCTACAATATTCATTTAGTAGATATAACTTTGGAAAGATTGAAAGCTCCCTGTTTATTTTTGTGTTGGGGGATAAATGAAAACACTTAAGCAAATTTACAGTGGGTGGGAATCGTAGCTGTAAGAAATGGGATTATTACTGGTATAGTTAGTTAGAGGAGATTTGCCAATTAAAGCTTCTTTGTAT  >  1/1438174‑1438648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑