Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,391,190	A→G	intergenic (+252060/+2121)	unknown → / ← unknown	tRNA‑Met‑CAT/tRNA‑Val‑GAC

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,391,190	0	A	G	100.0%	157.2 / NA	56	intergenic (+252060/+2121)	unknown/unknown	tRNA‑Met‑CAT/tRNA‑Val‑GAC
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (27/29);  total (27/29)

CTTTACGGCTACGCACCAACACGGCGATACTTTCCGGTTTCAGCGTTTTTTTGTCACCATCATCAAGGCGAAAAACGGCAGAGTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCACCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGTAATTTTTCGTTAAATTAAAACGATGTTGCGCTTGGCGGGTGGCTTGGAAATAAGTAAAAATGTCGGCGCCACGGAATTTATAAATCGCCTGTTTCGGGTCGCCAATCATAATAAAGCCGCTATCAGATTGAGCGTCTGTCTGAGGT  >  1/1390961‑1391436                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                       cttTACGGCTACGCACCAACACGGCGATACTTTCCGGTTTCAGCGTTTTTTTGTCACCATCATCAAGGCGAAAAACGGCAGAGTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATg                                                                                                                                                                                                                                   >  1:390157/1‑251 (MQ=255) cttTACGGCTACGCACCAACACGGCGATACTTTCCGGTTTCAGCGTTTTTTTGTCACCATCATCAAGGCGAAAAACGGCAGAGTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACACACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATg                                                                                                                                                                                                                                   >  1:45623/1‑251 (MQ=255)          tACGCACCAACACGGCGATACTTTCCGGTTTCAGCGTTTTTTTGTCACCATCATCAAGGCGAAAAACGGCAGAGTTTTCCATCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATag                                                                                                                                                                                                                          <  1:431234/251‑1 (MQ=255)          tACGCACCAACACGGCGATACTTTCCGGTTTCAGCGTTTTTTTGTCACCATCATCAAGGCGAAAAACGGCAGAGTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATag                                                                                                                                                                                                                          <  1:758628/251‑1 (MQ=255)          tACGCACCAACACGGCGATACTTTCCGGTTTCAGCGTTTTTTTGTCACCATCATCAAGGCGAAAAACGGCAGAGTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATag                                                                                                                                                                                                                          <  1:756962/251‑1 (MQ=255)          tACGCACCAACACGGCGATACTTTCCGGTTTCAGCGTTTTTTTGTCACCATCATCAAGGCGAAAAACGGCAGAGTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATag                                                                                                                                                                                                                          <  1:380314/251‑1 (MQ=255)              cACCAACACGGCGATACTTTCCGGTTTCAGCGTTTTTTTGTCACCATCATCAAGGCGAAAAACGGCAGAGTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGATTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGaa                                                                                                                                                                                                                      >  1:841080/1‑251 (MQ=255)                      cGGCGATACTTTCCGGTTTCAGCGTTTTTTTGTCACCATCATCAAGGCGAAAAACGGCAGAGTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATag                                                                                                                                                                                                                          <  1:71248/239‑1 (MQ=255)                             aCTTTCCGGTTTCAGCGTTTTTTTGTCACCATCATCAAGGCGAAAAACGGCAGAGTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAAcggcggatggtcg                                                                                                                                                                                                        >  1:668516/1‑243 (MQ=255)                                                   ttGTCACCATCATCAAGGCGAAAAACGGCAGAGTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTcac                                                                                                                                                                                 <  1:252476/251‑1 (MQ=255)                                                      tCACCATCATCAAGGCGAAAAACGGCAGAGTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGACATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTcacac                                                                                                                                                                               <  1:663107/250‑1 (MQ=255)                                                               tcaAGGCGAAAAACGGCAGAGTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCcaccac                                                                                                                                                                     <  1:132188/251‑1 (MQ=255)                                                               tcaAGGCGAAAAACGGCAGAGTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCcaccac                                                                                                                                                                     <  1:324951/251‑1 (MQ=255)                                                                    gCGAAAAACGGCAGAGTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACgtgt                                                                                                                                                                 <  1:239475/250‑1 (MQ=255)                                                                    gCGAAAAACGGCAGAGTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACgtg                                                                                                                                                                  <  1:413386/249‑1 (MQ=255)                                                                       aaaaaCGGCAGAGTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCCTAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAATCCACCACCTGTTGAt                                                                                                                                                             >  1:452231/1‑251 (MQ=255)                                                                        gcgtcagatgtgtataagagacagcTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGCTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATg                                                                                                                                                            >  1:407014/25‑251 (MQ=255)                                                                          aaCGGCAGAGTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATggg                                                                                                                                                          <  1:773071/251‑1 (MQ=255)                                                                                   gTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACACAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAAACAAACAACCGATTCACACAGTCCACCACGGGGTGATgggggggggaat                                                                                                                                                 >  1:38357/1‑242 (MQ=255)                                                                                    ttttCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGTaa                                                                                                                                                  <  1:225336/249‑1 (MQ=255)                                                                                                     tAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGTAATTTTTCGTTAAATTAAAAc                                                                                                                               <  1:359960/251‑1 (MQ=255)                                                                                                     tAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGTAATTTTTCGTTAAATTAAAAc                                                                                                                               <  1:509773/251‑1 (MQ=255)                                                                                                           atatTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAAACGATTCACACAGACCACCACGGGTTGGTGGGAGCGGGAATTTTTTGTTAAATTAAAAAGATGtt                                                                                                                         >  1:194664/1‑251 (MQ=255)                                                                                                                ggATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTTGGTAAAATCAAAAAAACGATTCAAACAGGCCACCAAGGGTTGATGGGGGAGGGAATTTTTTGTTAAATTaaaaaggaggtgcg                                                                                                                      >  1:30885/1‑239 (MQ=255)                                                                                                                ggATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTTATGGGAGCGGGAATTTTTCGTTAAATTAAAACGATGTTgcg                                                                                                                      >  1:753451/1‑249 (MQ=255)                                                                                                                ggATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGGAATTTTTTGTTAAATTTAAACGATGTTgcg                                                                                                                      >  1:523525/1‑249 (MQ=255)                                                                                                                     gAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGGAATTTTTCGTTAAATTAAAACGATGTTGCGCTTGGCg                                                                                                               >  1:487173/1‑251 (MQ=255)                                                                                                                           gcgcAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATag                                                                                                                                                                                                                          >  1:526194/1‑138 (MQ=255)                                                                                                                           gcgcAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGGGTTGATGGGAGCGGGAATTTTTTGTTAAATTAAAAAGATGTTGCGCTTGGCggggggg                                                                                                         >  1:659982/1‑247 (MQ=255)                                                                                                                                  cTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGTAATTTTTCGTTAAATTAAAACGATGTTGCGCTTGGCGGGTGGCTTGGaaa                                                                                                  <  1:3817/251‑1 (MQ=255)                                                                                                                                               ttCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGTAATTTTTCGTTAAATTAAAAc                                                                                                                               <  1:768106/209‑1 (MQ=255)                                                                                                                                                 cTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATaga                                                                                                                                                                                                                         >  1:101917/1‑117 (MQ=255)                                                                                                                                                 cTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATag                                                                                                                                                                                                                          >  1:734893/1‑116 (MQ=255)                                                                                                                                                 cTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCcaccac                                                                                                                                                                     >  1:469974/1‑169 (MQ=255)                                                                                                                                                 cTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCcaccac                                                                                                                                                                     <  1:736559/169‑1 (MQ=255)                                                                                                                                                           ggCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCCCGTGTTGATGGGAGCGGGAATTTTTCGTTAAATTAAAACGATGTTGCGCTTGGCGGGGGGCTTGGGAAAAAGTAAAAAAGTCGGCGCCACGGa                                                                         >  1:66259/1‑251 (MQ=255)                                                                                                                                                           ggCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGGAAttt                                                                                                                                               >  1:724570/1‑181 (MQ=255)                                                                                                                                                            gCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAAACCAAAAACCCATTCACACAATCCACCACGTGTTGATGGGAGCGGTAATTTTTCGTTAAATTAAAACCATGTTTCGCTTGGCGGGGGGCTTGGAAATAAGGAAAAAAGTCCGCGCCACGGaa                                                                        >  1:375044/1‑251 (MQ=255)                                                                                                                                                                   ccACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAAACGATTCACACAGTCCACCACGGGTTGATggg                                                                                                                                                          >  1:477940/1‑162 (MQ=255)                                                                                                                                                                          aaaaCGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTTTTCGCTAAAATCAAAAAAACGATTCACACAGTCCACCACGTGTTGATGGGGGCGGGAATTTTTTGTTAAATTTAAAAGATGTTGCGCCTGGCGGGGGGCTTGGGAATAAGTAAAAATGt                                                                                     >  1:804252/1‑224 (MQ=255)                                                                                                                                                                                  ccGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGGGCGGTAATTTTTCGTTAAATTAAAACGATGTTGCGCTTGGCGGGGGGCTTGGGAATAAGTAAAAAAGTCGGCGCCACGGAATTTTTAAATCGCCTGTTTCggg                                                  >  1:140726/1‑251 (MQ=255)                                                                                                                                                                                  ccGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGTAATTTTTCGTTAAATTAAAAAGATGTTgcgc                                                                                                                     >  1:348128/1‑184 (MQ=255)                                                                                                                                                                                       ggTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTTGCTAAAATCAAACAACCGATTCACACAGTCCACCACGGGTTGATGGGGGCGGTAATTTTTCGTTAAATTAAAACGATGTTGCGCTTGGCGGGGGGCTTGGGAATAAGTAAAAAAGTCGGCGCCCCGGGATTTATAAATCGCCTGTTTTGGGgcgc                                              >  1:643083/1‑250 (MQ=255)                                                                                                                                                                                       ggTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATggg                                                                                                                                                          <  1:424873/142‑1 (MQ=255)                                                                                                                                                                                                      cTTAACCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGTAATTTTTCGTTAAATTAAAACGATGTTGCGCTTGGCGGGTGGCTTGGAAATAAGTAAAAATGTCGGCGCCACGGAATTTATAAATCGCCTGTTTCGGGTCGCCAATCATAATAAAGc                               <  1:883449/250‑1 (MQ=255)                                                                                                                                                                                                          aCCAAAATTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGGAATTTTTCGTTAAATTAAAACGATGTTGCGCTTGGCGGGGGGCTTGGGAATAAGTAAAAAAGTCGGCGCCACGGAATTTATAAATCGCCCGTTTTGGGTCGCCCATCATAATaaaacctggt                          >  1:194264/1‑244 (MQ=255)                                                                                                                                                                                                                aTTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGTAATTTTTCGTTAAATTAAAACGATGTTGCGCTTGGCGGGTGGCTTGGAAATAAGTAAAAATGTCGGCGCCACGGAATTTATAAATCGCCTGTTTCGGGTCGCCAATCATAATAAAGCCGCTATCAGAt                    <  1:738574/251‑1 (MQ=255)                                                                                                                                                                                                                aTTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGTAATTTTTCGTTAAATTAAAACGATGTTGCGCTTGGCGGGTGGCTTGGAAATAAGTAAAAATGTCGGCGCCACGGAATTTATAAATCGCCTGTTTCGGGTCGCCAATCATAATAAAGCCGCTATCAGAt                    <  1:592347/251‑1 (MQ=255)                                                                                                                                                                                                                aTTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGTAATTTTTCGTTAAATTAAAACGATGTTGCGCTTGGCGGGTGGCTTGGAAATAAGTAAAAATGTCGGCGCCACGGAATTTATAAATCGCCTGTTTCGGGTCGCCAATCATAATAAAGCCGCTATCAGAt                    <  1:485401/251‑1 (MQ=255)                                                                                                                                                                                                                aTTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGTAATTTTTCGTTAAATTAAAACGATGTTGCGCTTGGCGGGTGGCTTGGAAATAAGTAAAAATGTCGGCGCCACGGAATTTATAAATCGCCTGTTTCGGGTCGCCAATCATAATAAAGCCGCTATCAGAt                    <  1:290614/251‑1 (MQ=255)                                                                                                                                                                                                                aTTGCGGGTGATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGTAATTTTTCGTTAAATTAAAACGATGTTGCGCTTGGCGGGTGGCTTGGAAATAAGTAAAAATGTCGGCGCCACGGAATTTATAAATCGCCTGTTTCGGGTCGCCAATCATAATAAAGCCGCTATCAGAt                    <  1:26028/251‑1 (MQ=255)                                                                                                                                                                                                                         gATCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATag                                                                                                                                                                                                                          <  1:98426/44‑1 (MQ=255)                                                                                                                                                                                                                          aTCCGTTCTTGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGGGTTGATGGGAGCGGGAATTTTTCGTTAAATTAAAACGATGTTGCGCTTGGCGGGGGGCTTGGAAATAAGTAAAAATGTCGGCGCCACGGAATTTATAAATCGCCTGTTTTGGGGCGCCAATCATAATAAAGCCGCTATCAGATTGAGCgt             >  1:302883/1‑248 (MQ=255)                                                                                                                                                                                                                                  ttGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGTAATTTTTCGTTAAATTAAAACGATGTTGCGCTTGGCGGGTGGCTTGGAAATAAGTAAAAATGTCGGCGCCACGGAATTTATAAATCGCCTGTTTCGGGTCGCCAATCATAATAAAGCCGCTATCAGATTGAGCGTCTGTCTGAGgt  <  1:150357/251‑1 (MQ=255)                                                                                                                                                                                                                                  ttGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGTAATTTTTCGTTAAATTAAAACGATGTTGCGCTTGGCGGGTGGCTTGGAAATAAGTAAAAATGTCGGCGCCACGGAATTTATAAATCGCCTGTTTCGGGTCGCCAATCATAATAAAGCCGCTATCAGATTGAGCGTCTGTCTGAGgt  <  1:230014/251‑1 (MQ=255)                                                                                                                                                                                                                                  ttGCGCCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGTAATTTTTCGTTAAATTAAAACGATGTTGCGCTTGGCGGGTGGCTTGGAAATAAGTAAAAATGTCGGCGCCACGGAATTTATAAATCGCCTGTTTCGGGTCGCCAATCATAATAAAGCCGCTATCAGATTGAGCGTCTGTCTGAGgt  <  1:345110/251‑1 (MQ=255)                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                       CTTTACGGCTACGCACCAACACGGCGATACTTTCCGGTTTCAGCGTTTTTTTGTCACCATCATCAAGGCGAAAAACGGCAGAGTTTTCCACCGCACTTTGTAGCCAATATTGGATAGAAACGGCGCAAGCTTTTGCCATGTTTTCTTTAACGGAGGCTTCATCCACATAAAAACGCACCGCAGGTTCCGGCTGCCCGCTTAACCAAAATTGCGGGTGATCCGTTCTTGCACCGACCGGCATAAATTGAATGTCTTTATAGAGAAACGGCGGTTGTTCGCTAAAATCAAACAACCGATTCACACAGTCCACCACGTGTTGATGGGAGCGGTAATTTTTCGTTAAATTAAAACGATGTTGCGCTTGGCGGGTGGCTTGGAAATAAGTAAAAATGTCGGCGCCACGGAATTTATAAATCGCCTGTTTCGGGTCGCCAATCATAATAAAGCCGCTATCAGATTGAGCGTCTGTCTGAGGT  >  1/1390961‑1391436

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑