| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,320,419 | C→T | intergenic (+181289/+72892) | unknown → / ← unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,320,419 | 0 | C | T | 93.2% | 179.7 / NA | 74 | intergenic (+181289/+72892) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| Reads supporting (aligned to +/- strand): ref base C (5/0); new base T (24/45); total (29/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.37e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TAATCAAAATGTAGCGGGTCATTTTTATCGGTACGCCAAGGCTGCGCGCTTCTTCTTCCTCTAAAGAAAGCAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCCAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGATACGCCCAAAATATCCGGCGAAACCAATGGATTTTTAAACATCCCCTGATAGGTCG > 1/1320173‑1320664 | taatCAAAATGTAGCGGGTCATTTTTATCGGTACGCCAAGGCTGCGCGCTTCTTCTTCCTCTAAAGAAAGCAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑c < 1:367071/251‑1 (MQ=255) aaaaTGTAGCGGGTCATTTTTATCGGTACGCCAAGGCTGCGCGCTTCTTCTTCCTCTAAAGAAAGCAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGa < 1:372996/251‑1 (MQ=255) aaaTGTAGCGGGTCATTTTTATCGGTACGCCAAGGCTGCGCGCTTCTTCTTCCTCTAAAGAAAGCAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCCTGTA‑GGCAAAAAGTAATGGAAGGCAGGT‑GGGGAAAAGGATCGGCGAGAATTTTTAAAAACGAAATACCCGCGCTAAG‑CAACGaa > 1:577612/1‑251 (MQ=255) gTACGCCAAGGCTGCGCGCTTCTTCTTCCTCTAAAGAAAGCAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATac < 1:875658/250‑1 (MQ=255) cGCCAAGGCTGCGCGCTTCTTCTTCCTCTAAAGAAAGCAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGat < 1:612805/242‑1 (MQ=255) cGCCAAGGCTGCGCGCTTCTTCTTCCTCTAAAGAAAGCAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAAAAAAGGAAGGCAGTT‑GGGTAAAAAGAACGGCGAGAAATTTCAACAACGAAAACCCCCCGCCAAG‑CAAACAACCGATGGC‑AAATCCCCACAATaagaga > 1:219842/1‑251 (MQ=255) gCCAAGGCTGCGCGCTTCTTCTTCCTCTAAAGAAAGCAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAAc < 1:604124/224‑1 (MQ=255) ccAAGGCTGCGCGCTTCTTCTTCCTCTAAAGAAAGCAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATacgagaa < 1:509784/250‑1 (MQ=255) ccAAGGCTGCGCGCTTCTTCTTCCTCTAAAGAAAGCAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAACTTCCTAGTA‑GCCAAAAAAAAAAGGAAGGCAGGT‑GGGGAAAAAGAACGGCGAGAAATTTTAACAAAGAAAAACCCCCGCCAAG‑CAACGAACCCATGGCAAATTCCC‑ATAAAacgagaaa > 1:662844/1‑250 (MQ=255) cTGCGCGCTTCTTCTTCCTCTAAAGAAAGCAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAAt < 1:355704/251‑1 (MQ=255) cgcTTCTTCTTCCTCTAAAGAAAGCAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGggt < 1:662102/251‑1 (MQ=255) cttcttcttCCTCTAAAGAAAGCAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAACTTCCTAGTA‑GCCAAAAAAAAATGGAAGGCAGGT‑GGGGAAAAAGAACGGCGAGAAATTTTAACAAAGAAAACCCCGCGCTAAGACAA‑GAACCGATGGC‑AATTCCCGATAATACGAGAAAGAGAAACgggg > 1:705909/1‑248 (MQ=255) tcttcCTCTAAAGAAAGCAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGggtcttggtc < 1:67013/251‑1 (MQ=255) ctAAAGAAAGCAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTa < 1:126941/251‑1 (MQ=255) aaagCAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACggg < 1:411147/249‑1 (MQ=255) aaagCAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGt < 1:714374/250‑1 (MQ=255) cAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCg < 1:279260/250‑1 (MQ=255) aaaTTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGAt < 1:716229/251‑1 (MQ=255) tttAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAACTTTCTAGTA‑GCCCAAAAATAATGGAAGGCAGGT‑GGGGAAAAAGATCGGCGAGAAATTTTAACAAAGAAAACCCCCCGCTAAG‑AAAAGAAACGAAGGC‑CAATCCCCATAAAACGAGAACGAGAAACGGGGCTTTGTCttttcttccgggtgcggtaag > 1:252924/1‑233 (MQ=255) tAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAATAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAggg < 1:706048/251‑1 (MQ=255) gTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAAt < 1:757479/202‑1 (MQ=255) tAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATAc < 1:3390/249‑1 (MQ=255) aaaTAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGAAAAGGAAAGCAGGT‑GGGGAAAAAGAACGGCGAGAAATTTTAAAAAAGAAAAACCCCCGCCAAG‑CAAAGAACCCATGGG‑AATTTCCGATAAAACCAGAAAGAGAAACGGGGCTTGGGCTTTGCTACGGGGTGCGGTAAGGGGAAAGCAAAAAAACGTgg > 1:33478/1‑251 (MQ=255) gcgcCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAAAAATGGAAGGCAGGT‑GGGGAAAAAGAAAGGCGAGAATTTTCAACAAAGAAATCCCCGCGCCAAG‑CAACGAAACGAAGGC‑aaatt > 1:628206/1‑165 (MQ=255) gcgcCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGATTCCTAGTA‑GGCAAAAAGAAATGGAAGGCAGGT‑GGGGAAAAAGATCGGCGAGAATTTTTTACAAAGAAAACCCCCCGCTAAG‑CAACGAACCCATGGC‑AATTTCCGATAAAAAGAGAACGAGAAACGGGGCTTGGGCTTTTTTACGGGGTGCGa > 1:58082/1‑219 (MQ=255) gcgcCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAACTTCCTAGTA‑GCCCAAAAGGAATGGAAGGCAGTT‑GGGGAAAAAGATCGGCGAGAAATTTTAACAACGAAAACCCCCCGCCAAG‑CAACGAACCGATGGC‑AATTCCCCATAAAAAGAGAAAGAGAAACGGGGCTTTGTCTTTTCTACGGGGTGCGGTAAGGGAAAAGCaaaaaaacccggcaaagcc > 1:210492/1‑235 (MQ=255) gcCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAACTTCCTAGTAGGCCAAAAA‑AAATGGAAGGCAGTTGGGGAAAAAGGA‑CGGCGGGAAATTTTAAAAAAGAAAACCCCCCGCTAAG‑GAACGAAACCACGGG‑AATTTCCGAAAATAAGAAAAAGAGAAAAGGGGCTTGGGCTTTGCTACGGGGTGCGGTAAGGGGAAAGCAAAAAAACGGGGCAAAgccgc > 1:898210/1‑250 (MQ=255) gAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATacgagaa < 1:760163/173‑1 (MQ=255) gAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGGAAAAGGATCGGCGAGAATTTTTAACAAAGAAAACCCCCCGCTAAG‑CAAAGAAACGACGGC‑AATTCCCGATAATACGAGAACGAGAAACGGGGCTTTGTCTTTGCTACGGGGTGCGGTAAGGGGAACGCCAAAAACCCTGGCCATGGCGCCACGAAAgg > 1:574818/1‑251 (MQ=255) aaaTCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGc < 1:441398/251‑1 (MQ=255) ttGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGAt < 1:807108/189‑1 (MQ=255) ttGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAAc < 1:681538/250‑1 (MQ=255) ttGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAAc < 1:645367/250‑1 (MQ=255) ttGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAAc < 1:818097/250‑1 (MQ=255) ttGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAAc < 1:234886/250‑1 (MQ=255) gCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCCAAAAGAAATGGAAGGCAGTT‑GGGGAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAAAGAAACGAAGGC‑AATTCCCCATAATACGAGAAAGAGAATCGGGGCTTGGGCTTTTCTACGGGGTGCGGTAAGGGAAAAGCAAAATAACCTGGCAAAGCCGCCCAAAAAGGGAAAAAAATGAATaaaaaaaca > 1:715454/1‑247 (MQ=255) aTCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATAc < 1:563796/198‑1 (MQ=255) aTCTTGCGGACTAATGGCGGTTAAGCTTCCCAGTA‑GCCAAAAAATAATGGAAGGGAGGT‑GGGGAAAAGGATCGGCGAGAATTTTTAACAACGAAAACCCCCCGCTAAA‑CAAAGAACCGATGGC‑AAATCCCGATAAAACGAGAAAGAGAAACGGGGCTTGGGCTTTTCTACGGGTTGCGATAAGGGAAAAGCAAAATAACGGGGGAATGCCGCCCAGAAAAGCAAAAAACTGAAAATAAAACATCGGTaaaa > 1:25425/1‑250 (MQ=255) gACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAAt < 1:157750/142‑1 (MQ=255) gACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGGAATGGAAGGCAGGT‑GGGGAAAAGGATCGGCGAGAATTTTTAACAACGAAATCCCCCCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAAAGAGAATCGGGGCTTGGTCTTTGCTACGGGGTGCGGTAAGGGAAAAGCAAAATACCGTGGGAAAGCCGCCCAGAAAAGCCAAAAACCGAatat > 1:47038/1‑228 (MQ=255) aaTGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATaaa < 1:735569/227‑1 (MQ=255) cGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAAc < 1:402170/224‑1 (MQ=255) gCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAAc < 1:770406/217‑1 (MQ=255) cTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAAc > 1:190736/1‑216 (MQ=255) cTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAAc < 1:683492/216‑1 (MQ=255) tCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAAc < 1:500806/214‑1 (MQ=255) cTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAAc < 1:238107/251‑1 (MQ=255) tagta‑gCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAAcc < 1:565691/251‑1 (MQ=255) ta‑gCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGATTCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAAccc < 1:4617/249‑1 (MQ=255) gCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACccggcg > 1:159610/1‑251 (MQ=255) aaGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACccggcgccggcg < 1:582476/251‑1 (MQ=255) gTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGa > 1:844099/1‑251 (MQ=255) gTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGa > 1:483985/1‑251 (MQ=255) aTGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTAc < 1:891582/124‑1 (MQ=255) aTGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGATAc < 1:177880/251‑1 (MQ=255) gTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGATACGCCCAAAata > 1:793579/1‑251 (MQ=255) gggTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGc < 1:475427/108‑1 (MQ=255) gggTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGAt < 1:554106/121‑1 (MQ=255) gggTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGc < 1:774591/170‑1 (MQ=255) gggTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGATACGCCCAAAATATc > 1:853394/1‑250 (MQ=255) gggTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGATACGCCCAAAATATc > 1:672834/1‑250 (MQ=255) gggTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGATACGCCCAAAATATc > 1:247427/1‑250 (MQ=255) gggTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGATACGCCCAAAATATc > 1:328527/1‑250 (MQ=255) ggTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATaaa > 1:688419/1‑179 (MQ=255) ggTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGATAc < 1:412619/237‑1 (MQ=255) ggTAAAAGGATCGGCGAGAATTTTCAACAACGAAAT‑CCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGATACGCCCAAAATATCCgg > 1:239458/1‑251 (MQ=255) agaATTTTCAACAACGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGATACGCCCAAAATATCCGGCGAAACCAATGGAt < 1:292901/250‑1 (MQ=255) aacGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGa > 1:759993/1‑91 (MQ=255) aacGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGATACGCCCAAAATATCCGGCGAAACCAATGGATTTTTAAACATcc > 1:640239/1‑250 (MQ=255) cGAAATCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGATACGCCCAAAATATCCGGCGAAACCAATGGATTTTTAAAc > 1:186575/1‑244 (MQ=255) tCCCCGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGATACGCCCAAAATATCCGGCGAAACCAATGGATTTTTAAACATCCCCTGATAg < 1:354140/251‑1 (MQ=255) ccccGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGATACGCCCAAAATATCCGGCGAAACCAATGGATTTTTAAACATCCCCTGATAgg < 1:122565/251‑1 (MQ=255) cccGCGCTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGATACGCCCAAAATATCCGGCGAAACCAATGGATTTTTAAACATCCCCTGATAGGt < 1:240488/251‑1 (MQ=255) gcgcTAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGATACGCCCAAAATATCCGGCGAAACCAATGGATTTTTAAACATCCCCTGATAGGTCg > 1:755533/1‑250 (MQ=255) | TAATCAAAATGTAGCGGGTCATTTTTATCGGTACGCCAAGGCTGCGCGCTTCTTCTTCCTCTAAAGAAAGCAAATTTAAACGCCAACGAAGTAAAAATAGCGGCGCCATACCGAGCAATAAAATCGGCGCCAGTTGCAACACATCTTGCGGACTAATGGCGGTTAAGCTTCCTAGTA‑GCCAAAAAGTAATGGAAGGCAGTT‑GGGTAAAAGGATCGGCGAGAATTTTCAACAACGAAATCCCCGCGCCAAG‑CAACGAACCGATGGC‑AATTCCCGATAATACGAGAACGAGAATCGGGTCTTGGTCTTTGCTACGGGTTGCGATAAGGGAAACGCAAAATACCGTGGCAATGCCGCCAAGAAAGGCAAAAAGCTGAATATAAAACATCGGTAAATTGTAGAAAATTGCCAGTGACGCCCCAAACCCGGCGCCGGCGGATACGCCCAAAATATCCGGCGAAACCAATGGATTTTTAAACATCCCCTGATAGGTCG > 1/1320173‑1320664 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |