Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,212,251 T→C intergenic (+73121/+181060) unknown → / ← unknown tRNA‑Met‑CAT/tRNA‑Val‑GAC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,212,2510TC100.0% 60.7 / NA 23intergenic (+73121/+181060)unknown/unknowntRNA‑Met‑CAT/tRNA‑Val‑GAC
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (12/11);  total (12/11)

GTTTAAAGGTTATTCATATTATTGACCGTTATAAAATGACACATAAGATTGCTCATGAAGTTGAGGGTGCATTAATTTAGGCTTATCCAGGATTTTCAAATATTCAAAGTGGGGCGGGAATAATGAATATAGTGTAATAAATGCTTCTCATCTTGAAATAAAGTATTATAATGATGCTGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAATATTGTTACAAAAAGAAGTTTGTTTATTACAGAGAAATTCCTTTTTAGTCGGTTTAACTTCGGGTATTTTAAGAAAAAATCTCTGTAATTTTTACAGAATCAAAATTGATAACGCTACGCCAATTTTGCACACCGAATTTTTAAATATTAGATTTGTTGAAGACGGACGCAAAGAT  >  1/1212074‑1212492
                                                                                                                                                                                 |                                                                                                                                                                                                                                                 
gTTTAAAGGTTATTCATATTATTGACCGTTATAAAATGACACATAAGATTGCTCATGAAGTTGAGGGTGCATTAATTTAGGCTTATCCAGGATTTTCAAATATTCAAAGTGGGGCGGGAATAATGCATCTAGTGTAATAAATGCTTCTCATCTTGAAATAAAGTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAATATTGTTa                                                                                                                                                                          >  1:865589/1‑251 (MQ=255)
            ttCATATTATTGACCGTTATAAAATGACACATAAGATTGCTCATGAAGTTGAGGGTGCATTAATTTAGGCTTATCCAGGATTTTCAAATATTCAAAGTGGGGCGGGAATAATGAATATAGTGTAATAAATGCTTCTCATCTTGAAATAAAGTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAATATTGTTACAAAAAGAAgtt                                                                                                                                                              <  1:82868/251‑1 (MQ=255)
               atatTATTGACCGTTATAAAATGACACATAAGATTGCTAATGAAGTTGAGGGTGCATTAATTTAGGCTTATCCAGGATTTTCAAATATTCAAAGTGGGGCGGGAATAATGAATATAGTGTAATAAATGATTCTCATCTTGAAATAAAGTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCATATAGTAAAATATTGTTActgcctcttataaa                                                                                                                                                            >  1:10590/1‑237 (MQ=255)
                                        acaTAAGATTGCTCATGAAGTTGAGGGTGCATTAATTTAGGCTTATCCAGGATTTTCAAATATTCAAAGTGGGGCGGGAATAATGAATATAGTGTAATAAATGCTTCTCATCATGAAATAAAGAATTATAATAATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAATATTGTTACAAAAAGAAGTTTGTTTATTAc                                                                                                                                                    >  1:89922/1‑233 (MQ=255)
                                                           gTTGAGGGTGCATTAATTTAGGCTTATCCAGGATTTTCAAATATTCAAAGTGGGGCGGGAATAATGAATATAGTGTAATAAATGCTTCTCATCTTGAAATAAAGTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAATATTGTTACAAAAAGAAGTTTGTTTATTACAGAGAAATTCCTTTTTAGTCGGTTTAACtt                                                                                                                      >  1:249511/1‑244 (MQ=255)
                                                                    gCATTAATTTAGGCTTATCCAGGATTTTCAAATATTCAAAGTGGGGCGGGAATAATGAATATAGTGTAATAAATGCTTCTCATCTTGAAATAAAGTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACAt                                                                                                                                                                                         <  1:257481/168‑1 (MQ=255)
                                                                         aatgtAGGCTTATCCAGGATTTTCAAATATTCAAAGTGGGGCGGGAATAATGAATATAGTGTAATAAATGCTTCTCATCTTGAAATAAAGTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAatat                                                                                                                                                                               <  1:429808/169‑1 (MQ=255)
                                                                         aaTTTAGGCTTATCCAGGATTTTCAAATATTCAAAGTGGGGCGGGAATAATGAATATAGTGTAATAAATGCTTCTCATCTTGAAATAAAGTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAATATTGTTACAAAAAGAAGTTTGTTTATTACAGAGAAATTCCTTTTTAGTCGGTTTAACTTCGGGTATTTTAAGAAAAAAt                                                                                                  >  1:340929/1‑250 (MQ=255)
                                                                                                                         aatGAATATAGTGTAATAAATGCTTCTCATCTTGAAATAAAGTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAATATTGTTACAAAAAGAAGTTTGTTTATTACAGAGAAATTCCTTTTTAGTCGGTTTAACTTCGGGTATTTTAAGAAAAAATCTCTGTAATTTTTACAGAATCAAAATTGATAACGc                                                               <  1:156865/237‑1 (MQ=255)
                                                                                                                              atatAGTGTAATAAATGCTTCTCATCTTGAAATAAAGTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAaatttaattt                                                                                                                                                                                                   >  1:244424/1‑100 (MQ=255)
                                                                                                                                     gtAATAAATGCTTCTCATCTTGAAATAAAGTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAATATTGTTACAAAAAGAAGTTTGTTTATTACAGAGAATTTCCTTTTTAGTCGGTTTAACTTCGGGTATTTTAAGAAAAAATCTCTGTAATTTTTACAGAATCAAAATTGATAACGCTACGCCAATTTTGCACACCGAAtttt                                     >  1:255244/1‑251 (MQ=255)
                                                                                                                                                          gAAATAAAGTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAaat                                                                                                                                                                                                          >  1:387129/1‑65 (MQ=255)
                                                                                                                                                             aTAAAGTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAATATTGTTACa                                                                                                                                                                        <  1:45197/96‑1 (MQ=255)
                                                                                                                                                             aTAAAGTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAATATTGTTACAAAAAGAAGTTTGTTTATTACAGAGAAATTCCTTTTTAGTCGGTTTAACTTCGGGTATTTTAAGAAAAAATCTCTGTAATTTTTACAGAATCAAAATTGATAACGc                                                               <  1:773409/201‑1 (MQ=255)
                                                                                                                                                                  gTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATc                                                                                                                                                                                                              <  1:586482/53‑1 (MQ=255)
                                                                                                                                                                  gTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAatat                                                                                                                                                                               <  1:342395/84‑1 (MQ=255)
                                                                                                                                                                  gTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAATATTGTTACAAAAAGAAGTTTGTTTATTAc                                                                                                                                                    <  1:847173/111‑1 (MQ=255)
                                                                                                                                                                  gTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAATATTGTTACAAAAAGAAGTTTGTTTATTACAGAGAAATTCCTTTTTAGTCGGTTTAACTTCGGGTATTTTAAGAAAAAATCTCTGTAATTTTTACAGAATCAAAATTGATAACGCTACGc                                                          <  1:697630/201‑1 (MQ=255)
                                                                                                                                                                  gTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAATATTGTTACAAAAAGAAGTTTGTTTATTACAGAGAAATTCCTTTTTAGTCGGTTTAACTTCGGGTATTTTAAGAAAAAATCTCTGTAATTTTTACAGAATCAAAATTGATAACGCTACGCCAATTTTGCACACCGAATTTTTa                                   >  1:357618/1‑224 (MQ=255)
                                                                                                                                                                  gTATTATAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAATATTGTTACAAAAAGAAGTTTGTTTATTACAGAGAAATTCCTTTTTAGTCGGTTTAACTTCGGGTATTTTAAGAAAAAATCTCTGTAATTTTTACAGAATCAAAATTGATAACGCTACGCCAATTTTGCACACCGAATTTTTAAATATTAGATTTGTTGAAgacggacg         >  1:852500/1‑250 (MQ=255)
                                                                                                                                                                    attatAATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAATATTGTTACAAAAAGAAGTTTGTTTATTACAGAGAAATTCCTTTTTAGTCGGTTTAACTTCGGGTATTTTAAGAAAAAATCTCTGTAATTTTTACAGAATCAAAATTGATAACGCTACGCCAATTTTGCACACCGAATTTTTAAATATTAGATTTGTTGAAGACGGACGCaa      >  1:133826/1‑251 (MQ=255)
                                                                                                                                                                        taATGATGCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAATATTGTTACAAAAAGAAGTTTGTTTATTACAGAGAAATTCCTTTTTAGTCGGTTTAACTTCGGGTATTTTAAGAAAAAATCTCTGTAATTTTTACAGAATCAAAATTGATAACGCTACGCCAATTTTGCACACCGAATTTTTAAATATTAGATTTGTTGAAGACGGACGCAAAGAt  <  1:420159/251‑1 (MQ=255)
                                                                                                                                                                          atgatgCCGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAATATTGTTACAAAAAGAAGTTTGTTTATTACAGAGAAATTCCTTTTTAGTCGGTTTAACTTCGGGTATTTTAAGAAAAAATCTCTGTAATTTTTACAGAATCAAAATTGATAACGCTACGCCAATTTTGcac                                               >  1:717722/1‑204 (MQ=255)
                                                                                                                                                                                 |                                                                                                                                                                                                                                                 
GTTTAAAGGTTATTCATATTATTGACCGTTATAAAATGACACATAAGATTGCTCATGAAGTTGAGGGTGCATTAATTTAGGCTTATCCAGGATTTTCAAATATTCAAAGTGGGGCGGGAATAATGAATATAGTGTAATAAATGCTTCTCATCTTGAAATAAAGTATTATAATGATGCTGCGCGCGATAAATTAACCACTTTCAGCGCGATAAATCAAATTTAATTTTATTTCACATAGTAAAATATTGTTACAAAAAGAAGTTTGTTTATTACAGAGAAATTCCTTTTTAGTCGGTTTAACTTCGGGTATTTTAAGAAAAAATCTCTGTAATTTTTACAGAATCAAAATTGATAACGCTACGCCAATTTTGCACACCGAATTTTTAAATATTAGATTTGTTGAAGACGGACGCAAAGAT  >  1/1212074‑1212492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑