Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,188,474 A→G intergenic (+49344/+204837) unknown → / ← unknown tRNA‑Met‑CAT/tRNA‑Val‑GAC

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,188,4740AG100.0% 187.9 / NA 61intergenic (+49344/+204837)unknown/unknowntRNA‑Met‑CAT/tRNA‑Val‑GAC
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (38/23);  total (38/23)

GCAATCACGCGATACCATTGGTCGAGGGCGAATTGTTTGGCTGATTGCACATCAAAATAACGGCAATATTTTTTGACAATCGCATCAAATGCGTTGTCATAGGTTCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAAAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGATTCATGCGCCGGCAGGCTATGGCAAAACCACCTTAATTTCCCAATGGGTCGCCGGGCAGAAAAATGTCGGTTGGTATTCTTTAGATGAAA  >  1/1188227‑1188716
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                  
gCAATCACGCGATACCATTGGTCGAGGGCGAATTGTTTGGCTGATTGCACATCAAAATAACGGCAATATTTTTTGACAATCGCATCAAATGCGTTGTCATAGGTTCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGagaaa                                                                                                                                                                                                                                                 >  1:637740/1‑251 (MQ=255)
             aCCATTGGTCGAGGGCGAATTGTTTGGCTGATTGCACATCAAAATAACGGCAATATTTTTTGACAATCGCATCAAATGCGTTGTCATAGGTTCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCttt                                                                                                                                                                                                                                     >  1:134250/1‑250 (MQ=255)
                    gTCGAGGGCGAATTGTTTGGCTGATTGCACATCAAAATAACGGCAATATTTTTTGACAATCGCATCAAATGCGTTGTCATAGGTTCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGt                                                                                                                                                                                                                                  >  1:569204/1‑246 (MQ=255)
                     tCGAGGGCGAATTGTTTGGCTGATTGCACATCAAAATAACGGCAATATTTTTTGACAATCGCATCAAATGCGTTGTCATAGGTTCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGt                                                                                                                                                                                                                            <  1:179074/251‑1 (MQ=255)
                         gggCGAATTGTTTGGCTGATTGCACATCAAAATAACGGCAATATTTTTTGACAATCGCATCAAATGCGTTGTCATAGGTTCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCaa                                                                                                                                                                                                                        >  1:612655/1‑251 (MQ=255)
                            cGAATTGTTTGGCTGATTGCACATCAAAATAACGGCAATATTTTTTGACAATCGCATCAAATGCGTTGTCATAGGTTCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTc                                                                                                                                                                                                                     <  1:585964/251‑1 (MQ=255)
                                            ttGCACATCAAAATAACGGCAATATTTTTTGACAATCGCATCAAATGCGTTGTCATAGGTTCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAAtc                                                                                                                                                                                                                                               <  1:548991/209‑1 (MQ=255)
                                                    cAAAATAACGGCAATATTTTTTGACAATCGCATCAAATGCGTTGTCATAGGTTCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTc                                                                                                                                                                                                                          <  1:668799/222‑1 (MQ=255)
                                                    cAAAATAACGGCAATATTTTTTGACAATCGCATCAAATGCGTTGTCATAGGTTCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTc                                                                                                                                                                                               >  1:133031/1‑249 (MQ=255)
                                                      aaaTAACGGCAATATTTTTTGACAATCGCATCAAATGCGTTGTCATAGGTTCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCAt                                                                                                                                                                                            >  1:665023/1‑250 (MQ=255)
                                                                           aCAATCGCATCAAATGCGTTGTCATAGGTTCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATc                                                                                                                                                                       <  1:40882/250‑1 (MQ=255)
                                                                                             ttGTCATAGGTTCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTc                                                                                                                                                     <  1:444238/250‑1 (MQ=255)
                                                                                               gTCATAGGTTCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTc                                                                                                                                                                            <  1:631344/225‑1 (MQ=255)
                                                                                               gTCATAGGTTCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCaa                                                                                                                                                   >  1:853980/1‑250 (MQ=255)
                                                                                               gTCATAGGTTCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCaa                                                                                                                                                   >  1:550359/1‑250 (MQ=255)
                                                                                               gTCATAGGTTCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCaa                                                                                                                                                   >  1:563443/1‑250 (MQ=255)
                                                                                                       ttCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCg                                                                                                                                           <  1:339506/250‑1 (MQ=255)
                                                                                                             gttTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTc                                                                                                                                                                            <  1:176333/211‑1 (MQ=255)
                                                                                                             gttTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAAc                                                                                                                                     >  1:151677/1‑250 (MQ=255)
                                                                                                             gttTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAAc                                                                                                                                     >  1:48888/1‑250 (MQ=255)
                                                                                                                  ggCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAAtt                                                                                                                                                                                 >  1:532337/1‑201 (MQ=255)
                                                                                                                   gCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAAtt                                                                                                                                                                                                                      <  1:576289/163‑1 (MQ=255)
                                                                                                                   gCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTc                                                                                                                                                                            >  1:459805/1‑205 (MQ=255)
                                                                                                                   gCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTg                                                                                                                              >  1:270790/1‑251 (MQ=255)
                                                                                                                      tAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTg                                                                                                                              >  1:556554/1‑248 (MQ=255)
                                                                                                                         aaGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGAc                                                                                                                        <  1:231347/251‑1 (MQ=255)
                                                                                                                          aGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACa                                                                                                                       >  1:155742/1‑251 (MQ=255)
                                                                                                                                             atttatttCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAAc                                                                                                                                                            >  1:577575/1‑195 (MQ=255)
                                                                                                                                                    tCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAAc                                                                                                                                                            >  1:54087/1‑188 (MQ=255)
                                                                                                                                                       tGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGAt                                                                                           <  1:490902/250‑1 (MQ=255)
                                                                                                                                                         gTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATg                                                                                                                                                                                                      >  1:22547/1‑141 (MQ=255)
                                                                                                                                                         gTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGATTCa                                                                                        >  1:489989/1‑251 (MQ=255)
                                                                                                                                                         gTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTACAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTg                                                                                                                                                                               >  1:642131/1‑164 (MQ=255)
                                                                                                                                                            ttattaTGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGt                                                                                                                                                                                                     >  1:787297/1‑139 (MQ=255)
                                                                                                                                                                  tGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCg                                                                                                                                                                                                                                   <  1:317229/103‑1 (MQ=255)
                                                                                                                                                                   gTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGATTCATGCGCCGGCa                                                                              >  1:691949/1‑251 (MQ=255)
                                                                                                                                                                              gTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATc                                                                                                                                                                                           <  1:767510/131‑1 (MQ=255)
                                                                                                                                                                              gTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATcc                                                                                                       >  1:645597/1‑215 (MQ=255)
                                                                                                                                                                               tAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGATTCATGCGCCGGCAGGCTATGGCaa                                                                   <  1:701273/250‑1 (MQ=255)
                                                                                                                                                                                    cGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGATTCATGCGCCGGCAGGCt                                                                          <  1:870198/238‑1 (MQ=255)
                                                                                                                                                                                      aaaTCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGATTCATGCGCCGGCAGGCTATGGCAAAaccac                                                             >  1:637146/1‑249 (MQ=255)
                                                                                                                                                                                         tcctccCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCtt                                                                                                            <  1:227244/199‑1 (MQ=255)
                                                                                                                                                                                           ctccCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAAtt                                                                                                                                                                                 >  1:714208/1‑128 (MQ=255)
                                                                                                                                                                                                 gCTATAATCTTGCCGGTATGACTACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTc                                                                                                                                                                                                                          <  1:237777/81‑1 (MQ=255)
                                                                                                                                                                                                 gCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGtt                                                                                                                                                                                                                                 <  1:698372/74‑1 (MQ=255)
                                                                                                                                                                                                 gCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGt                                                                                                                                                                                                     >  1:36658/1‑102 (MQ=255)
                                                                                                                                                                                                 gCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGttt                                                                                                                                        >  1:565953/1‑163 (MQ=255)
                                                                                                                                                                                                 gCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGAtt                                                                                          >  1:308401/1‑209 (MQ=255)
                                                                                                                                                                                                 gCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGATTCATGCGCCGGCAGGCTATGGCAAAACCACCTTAATTTCCCaa                                                >  1:876513/1‑251 (MQ=255)
                                                                                                                                                                                                 gCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGATTCATGCGCCGGCAGGCTATGGCAAAACCACCTTAATTTCCCaa                                                >  1:476405/1‑251 (MQ=255)
                                                                                                                                                                                                  cTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGATTCATGCGCCGGCAGGCTATGGCAAAACCACCTTAATTTCCCAAt                                               >  1:325367/1‑251 (MQ=255)
                                                                                                                                                                                                                gTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGATTCATGCGCCGGCAGGCTATGGCAAAACCACCTTAATTTCCCAATGGGTCGCCGGGCAg                                 >  1:62704/1‑251 (MQ=255)
                                                                                                                                                                                                                     acaacaAGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGATTCATGCGCCGGCAGGCTATGGCAAAACCACCTTAATTTCCCAATGGGTCGCCGGGCAGaaaaa                            >  1:68131/1‑251 (MQ=255)
                                                                                                                                                                                                                      caacaaGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGgcg                                                                                                                  >  1:551299/1‑164 (MQ=255)
                                                                                                                                                                                                                        acaaGGAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGATTCATGCGCCGGCAGGCTATGGCAAAACCACCTTAATTTCCCAATGGGTCGCCGGGCAGAAAAATGt                         <  1:21968/251‑1 (MQ=255)
                                                                                                                                                                                                                             gAAGTAATTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAAc                                                                                                                                                  >  1:225254/1‑125 (MQ=255)
                                                                                                                                                                                                                                  aaTTCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGATTCATGCGCCGGCAGGCTATGGCAAAACCACCTTAATTTCCCAATGGGTCGCCGGGCAGAAAAATGTCGGTTGGTAt               <  1:768778/251‑1 (MQ=255)
                                                                                                                                                                                                                                     tCGTTAGACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGATTCATGCGCCGGCAGGCTATGGCAAAACCACCTTAATTTCCCAATGGGTCGCCGGGCAGAAAAATGTCGGTTGGTAtt              >  1:153896/1‑249 (MQ=255)
                                                                                                                                                                                                                                           gACTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGAt                                                                                           <  1:45531/166‑1 (MQ=255)
                                                                                                                                                                                                                                            aCTAGGTAGGAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGATTCATGCGCCGGCAGGCTATGGCAAAACCACCTTAATTTCCCAATGGGTCGCCGGGCAGAAAAATGTCGGTTGGTATTCTTTAGATg     <  1:102558/251‑1 (MQ=255)
                                                                                                                                                                                                                                               aggtaggAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTAt                                                                                                                                                       >  1:657315/1‑102 (MQ=255)
                                                                                                                                                                                                                                               aggtaggAGAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGATTCATGCGCCGGCAGGCTATGGCAAAACCACCTTAATTTCCCAATGGGTCGCCGGGCAGAAAAATGTCGGTTGGTATTCTTTAGATGaaa  >  1:457117/1‑251 (MQ=255)
                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                  
GCAATCACGCGATACCATTGGTCGAGGGCGAATTGTTTGGCTGATTGCACATCAAAATAACGGCAATATTTTTTGACAATCGCATCAAATGCGTTGTCATAGGTTCGTTGTTTAGGCATAAAAGGGGCTCCTGATTAATCAATTTATTTCGTGGTTTTATTATGTTTAATCAAAGTAAAACGAAATCCTCCCTGCTATAATCTTGCCGGTATGACAACAAGGAAGTAATTCGTTAGACTAGGTAGGAAAAATCCTCCTTCTTTCGTTATAGTTCAATTCACGATTAAAATTATGTTAATTCCATCAAAGTTAATTTGTTCTTATCGCCTGCAAAACAGTATTCAACGGGATCGTTTAACCCGCTTGCTGGACAAGGCGCATCTTTATCCGCTGGTGCTGATTCATGCGCCGGCAGGCTATGGCAAAACCACCTTAATTTCCCAATGGGTCGCCGGGCAGAAAAATGTCGGTTGGTATTCTTTAGATGAAA  >  1/1188227‑1188716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑