Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	144,622	A→G	intergenic (‑9171/+69075)	unknown ← / ← unknown	SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Arg‑ACG

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	144,622	0	A	G	100.0%	153.0 / NA	53	intergenic (‑9171/+69075)	unknown/unknown	SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Arg‑ACG
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (20/33);  total (20/33)

TTAGTTTCATTAGACGAAATCCTTGATTCTCTGGAACAATACTATCCAGCCGCAGCGTTAATATTGCGAGTAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCATATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAAGAGAGTAATGAATAAAAAATCTTACGTTATCTTTTTAACCATTTTATATTTTGGCTAAAAAAGAAAGAAAATAGGATTATTCCATAATGTTGGAGAAGTGAAAATCA  >  1/144379‑144862                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                 ttAGTTTCATTAGACGAAATCCTTGATTCTCTGGAACAATACTATCCAGCTGCAGCGTTAATATTGCGAGTAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAg                                                                                                                                                                                                                                           <  1:382210/251‑1 (MQ=255)              aCGAAATCCTTGATTCTCTGGAACAATACTATCCAGCTGCAGCGTTAATATTGCGAGTAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAAt                                                                                                                                                                                                                              <  1:857859/251‑1 (MQ=255)                          aTTCTCTGGAACAATACTATCCAGCTGCAGCGTTAATATTGCGAGTAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGt                                                                                                                                                                                                                   <  1:160543/250‑1 (MQ=255)                          aTTCTCTGGAACAATACTATCCAGCTGCAGCGTTAATATTGCGAGTAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGt                                                                                                                                                                                                                   <  1:269943/250‑1 (MQ=255)                                  gAACAATACTATCCAGCTGCAGCGTTAATATTGCGAGTAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTaa                                                                                                                                                                                                          >  1:801017/1‑251 (MQ=255)                                       aTACTATCCAGCTGCAGCGTTAATATTGCGAGTAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAAt                                                                                                                                                                                                                              <  1:801160/226‑1 (MQ=255)                                       aTACTATCCAGCTGCAGCGTTAATATTGCGAGTAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTc                                                                                                                                                                                                             >  1:644143/1‑243 (MQ=255)                                       aTACTATCCAGCTGCAGCGTTAATATTGCGAGTAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACg                                                                                                                                                                                                     >  1:820164/1‑251 (MQ=255)                                            aTCCAGCTGCAGCGTTAATATTGCGAGTAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGt                                                                                                                                                                                                                   <  1:278595/232‑1 (MQ=255)                                            aTCCAGCTGCAGCGTTAATATTGCGAGTAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGaaa                                                                                                                                                                                                >  1:370302/1‑251 (MQ=255)                                               cAGCTGCAGCGTTAATATTGCGAGTAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGc                                                                                                                                                                                                                                          <  1:121257/206‑1 (MQ=255)                                                       gCGTTAATATTGCGAGTAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAg                                                                                                                                                                                                                            <  1:647272/212‑1 (MQ=255)                                                       gCGTTAATATTGCGAGTAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAg                                                                                                                                                                                                        >  1:488500/1‑232 (MQ=255)                                                             atatTGCGAGTAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACa                                                                                                                                                                               <  1:152150/251‑1 (MQ=255)                                                              tatTGCGAGTAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACAt                                                                                                                                                                              <  1:863281/251‑1 (MQ=255)                                                                   cGAGTAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAagg                                                                                                                                                                          <  1:356990/250‑1 (MQ=255)                                                                       tAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAaggagg                                                                                                                                                                       >  1:133451/1‑249 (MQ=255)                                                                         gATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCg                                                                                                                                                                                                                                         <  1:253952/181‑1 (MQ=255)                                                                                       aaCATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAaataa                                                                                                                                                       <  1:542897/249‑1 (MQ=255)                                                                                                 gTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGAc                                                                                                                                                                                >  1:844083/1‑214 (MQ=255)                                                                                                 gTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAACGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAagg                                                                                                                                                                          >  1:429835/1‑220 (MQ=255)                                                                                                      aaGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAAc                                                                                                                                       <  1:394550/250‑1 (MQ=255)                                                                                                      aaGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACg                                                                                                                                      >  1:96125/1‑251 (MQ=255)                                                                                                               tGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTa                                                                                                                             <  1:892798/251‑1 (MQ=255)                                                                                                                 cTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTaaa                                                                                                                           <  1:420685/251‑1 (MQ=255)                                                                                                                     aaaTGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTg                                                                                                                        >  1:116632/1‑250 (MQ=255)                                                                                                                            aaaGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACa                                                                                                                                                                               <  1:318922/188‑1 (MQ=255)                                                                                                                             aaGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATAc                                                                                                               <  1:799154/251‑1 (MQ=255)                                                                                                                                  aaCTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAagag                                                                                                          <  1:839711/251‑1 (MQ=255)                                                                                                                                        ggTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATAc                                                                                                               >  1:247065/1‑240 (MQ=255)                                                                                                                                        ggTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAag                                                                                                            <  1:413135/243‑1 (MQ=255)                                                                                                                                        ggTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAag                                                                                                            >  1:328953/1‑243 (MQ=255)                                                                                                                                         gTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAAGAGAGTaa                                                                                                     <  1:86162/249‑1 (MQ=255)                                                                                                                                          ttttAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAAGAGAGTAATGa                                                                                                  <  1:118292/251‑1 (MQ=255)                                                                                                                                            ttAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAAGAGAGTAATGAAt                                                                                                >  1:71229/1‑251 (MQ=255)                                                                                                                                             tagtagTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAag                                                                                                            <  1:406348/238‑1 (MQ=255)                                                                                                                                             tagtagTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAAGAGAGTAATGAATa                                                                                               >  1:851899/1‑251 (MQ=255)                                                                                                                                                 agtGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAagagag                                                                                                        <  1:165911/238‑1 (MQ=255)                                                                                                                                                                aCTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAAGAGAGTAATGAATAAAAAATCTTACGTTATCtt                                                                            <  1:400923/251‑1 (MQ=255)                                                                                                                                                                                aaTTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAAGAGAGTAATGAATAAAAAATCTTACGTTATCTTTTTAACCATTTTatat                                                            <  1:454934/251‑1 (MQ=255)                                                                                                                                                                                                      cGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATCAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATAc                                                                                                               >  1:680241/1‑178 (MQ=255)                                                                                                                                                                                                      cGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAag                                                                                                            <  1:367893/181‑1 (MQ=255)                                                                                                                                                                                                       gTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAAGAGAGTAATGAATAAAAAATCTTACGTTATCTTTTTAACCATTTTatat                                                            <  1:70447/228‑1 (MQ=255)                                                                                                                                                                                                                            cTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATAc                                                                                                               <  1:470039/156‑1 (MQ=255)                                                                                                                                                                                                                            cTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAag                                                                                                            >  1:594570/1‑159 (MQ=255)                                                                                                                                                                                                                            cTATTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCATTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATAc                                                                                                               <  1:557704/156‑1 (MQ=255)                                                                                                                                                                                                                              aTTTAAGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAAGAGAGTAATGAATAAAAAATCTTACGTTATCTTTTTAACCATTTTATATTTTGGCTAAAAAAGAAAGAAAATAGGATTATTCCATAATGTTGgag              <  1:775809/251‑1 (MQ=255)                                                                                                                                                                                                                                   aGTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAaataa                                                                                                                                                       >  1:237764/1‑109 (MQ=255)                                                                                                                                                                                                                                    gTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAg                                                                                                                                                               <  1:260664/100‑1 (MQ=255)                                                                                                                                                                                                                                    gTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAaataataat                                                                                                                                                   >  1:340331/1‑112 (MQ=255)                                                                                                                                                                                                                                    gTTATTTATTGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATAc                                                                                                               <  1:746541/148‑1 (MQ=255)                                                                                                                                                                                                                                          tattGAAATCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAAGAGAGTAATGAATAAAAAATCTTACGTTATCTTTTTAACCATTTTATATTTTGGCTAAAAAAGAAAGAAAATAGGATTATTCCATAATGTTGGAGAAGTGAAAATCa  >  1:495621/1‑251 (MQ=255)                                                                                                                                                                                                                                               aaaTCGTATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAagag                                                                                                          >  1:729884/1‑142 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                 TTAGTTTCATTAGACGAAATCCTTGATTCTCTGGAACAATACTATCCAGCCGCAGCGTTAATATTGCGAGTAGATGTGCAACAAAGAACATTTTTTGTACTAAGTTTCCCTGCTCGAAATGAAAAAGAGAACTCAGGTTTTAGTAGTGTTGTTTACGAAACTCAAAATATTCAACAATTCTTGTCAAGCGAAGGTGACGTTTATAGCCGAAATGATAATCTATTTAAGTTATTTATTGAAATCATATCAAGCGGGGGCGTAAATAGCGATTACGTTGATTCTAAAGACGGGAAAATGTCGTTATTTAGACATAAGGAGGCTAAAAAGACAAATAATAATTGGGTTTGGAACGGTATCATTAAATTGCTCTAATACAAGAGAGTAATGAATAAAAAATCTTACGTTATCTTTTTAACCATTTTATATTTTGGCTAAAAAAGAAAGAAAATAGGATTATTCCATAATGTTGGAGAAGTGAAAATCA  >  1/144379‑144862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑