| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 142,150 | G→A | intergenic (‑6699/+71547) | unknown ← / ← unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Arg‑ACG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 142,150 | 0 | G | A | 98.7% | 226.5 / NA | 77 | intergenic (‑6699/+71547) | unknown/unknown | SSU rRNA ## 16S rRNA, small subunit ribosomal RNA/tRNA‑Arg‑ACG |
| Reads supporting (aligned to +/- strand): ref base G (0/1); new base A (44/32); total (44/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCTTTTCTGCGTTAAAACGAACCGGTATCGATCGTCTGGCGGCAACATTAGACGGGTGGTTTGCACCGGTTTTTGCCTAAAAAAGACGATTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTGGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTGCCGCTTCCGGTTATATTGATACGGAAAA > 1/141903‑142395 | ccTTTTCTGCGTTAAAACGAACCGGTATCGATCGTCTGGCGGCAACATTAGACGGGTGGTTTGCACCGGTTTTTGCCTAAAAAAGACGATTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTc < 1:614275/251‑1 (MQ=255) tttCTGCGTTAAAACGAACCGGTATCGATCGTCTGGCGGCAACATTAGACGGGTGGTTTGCACCGGTTTTTGCCTAAAAAAGACGATTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCAcc < 1:207750/251‑1 (MQ=255) ttAAAACGAACCGGTATCGATCGTCTGGCGGCAACATTAGACGGGTGGTTTGCACCGGTTTTTGCCTAAAAAAGACGATTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAg < 1:633950/250‑1 (MQ=255) aCCGGTATCGATCGTCTGGCGGCAACATTAGACGGGTGGTTTGCACCGGTTTTTGCCTAAAAAAGACGATTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAg < 1:728478/251‑1 (MQ=255) ggTATCGATCGTCTGGCGGCAACATTAGACGGGTGGTTTGCACCGGTTTTTGCCTAAAAAAGACGATTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTaa > 1:469843/1‑251 (MQ=255) gTATCGATCGTCTGGCGGCAACATTAGACGGGTGGTTTGCACCGGTTTTTGCCTAAAAAAGACGATTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTaa > 1:492287/1‑250 (MQ=255) gTATCGATCGTCTGGCGGCAACATTAGACGGGTGGTTTGCACCGGTTTTTGCCTAAAAAAGACGATTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTaa > 1:487606/1‑250 (MQ=255) gcAACATTAGACGGGTGGTTTGCACCGGTTTTTGCCTAAAAAAGACGATTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCa > 1:101394/1‑250 (MQ=255) aCATTAGACGGGTGGTTTGCACCGGTTTTTGCCTAAAAAAGACGATTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTa > 1:832221/1‑225 (MQ=255) aCATTAGACGGGTGGTTTGCACCGGTTTTTGCCTAAAAAAGACGATTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCAct > 1:808081/1‑249 (MQ=255) aCATTAGACGGGTGGTTTGCACCGGTTTTTGCCTAAAAAAGACGATTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCAct > 1:218124/1‑249 (MQ=255) aCATTAGACGGGTGGTTTGCACCGGTTTTTGCCTAAAAAAGACGATTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCAct > 1:60475/1‑249 (MQ=255) aCATTAGACGGGTGGTTTGCACCGGTTTTTGCCTAAAAAAGACGATTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCAct > 1:110149/1‑249 (MQ=255) gACGGGTGGTTTGCACCGGTTTTTGCCTAAAAAAGACGATTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCgg > 1:738739/1‑251 (MQ=255) aaaaaaGACGATTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTATACAGCCGCGCATCCATGGGCGTTCAGGCGCCGCTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGc > 1:332234/1‑250 (MQ=255) aaGACGATTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAg < 1:820580/251‑1 (MQ=255) aTTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCggg > 1:746908/1‑251 (MQ=255) tttCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGt > 1:167698/1‑251 (MQ=255) cTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGAt < 1:443918/243‑1 (MQ=255) aTCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTAc < 1:189560/251‑1 (MQ=255) cGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTc < 1:547153/251‑1 (MQ=255) aaaaaaGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAAc < 1:460656/251‑1 (MQ=255) aaaaGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGc < 1:682580/251‑1 (MQ=255) gTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAg > 1:161431/1‑251 (MQ=255) aTTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATAccc < 1:719780/251‑1 (MQ=255) cacTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTAc < 1:25749/251‑1 (MQ=255) cacTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTAc < 1:793704/251‑1 (MQ=255) ttttttATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGt > 1:133738/1‑250 (MQ=255) ttttttATGTTGTCGCTCCGCATTCCCTGTTCAGAATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAAACGCGAATCCATGGGCGCTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGTTAAACCCGGTTTCACTCTCGTTGGCTTGCCGGAAAAAACCGTCTAAGAAGCCCAAGATCGGGAGCGCAGCGCCTTACTCACCGCCGAAGTCAGACACTCCGCCAAAAGCGCTACCgc > 1:774866/1‑249 (MQ=255) gttgtCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCg > 1:668659/1‑250 (MQ=255) ttgtCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGc > 1:689048/1‑250 (MQ=255) gtCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGccc > 1:40487/1‑250 (MQ=255) cTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATAc < 1:899510/215‑1 (MQ=255) ccGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGa > 1:282826/1‑251 (MQ=255) tCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTAc < 1:874499/224‑1 (MQ=255) cccTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATCCCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTAccc < 1:250508/251‑1 (MQ=255) gTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAg < 1:416784/89‑1 (MQ=255) gTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGAt > 1:97846/1‑163 (MQ=255) gTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCCaag > 1:242608/1‑251 (MQ=255) ttCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAACCCCGGTTTCCCTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAaaga < 1:481588/251‑1 (MQ=255) cAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAaagaag > 1:113776/1‑251 (MQ=255) gTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTc < 1:680312/179‑1 (MQ=255) gTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAagga > 1:770025/1‑251 (MQ=255) tATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAaggag < 1:565356/251‑1 (MQ=255) ttACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATAccc > 1:808593/1‑196 (MQ=255) gCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCg > 1:883693/1‑251 (MQ=255) cATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTg > 1:193729/1‑250 (MQ=255) gTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCa > 1:208417/1‑251 (MQ=255) tCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCgg > 1:550226/1‑89 (MQ=255) tCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTGAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCAt > 1:65889/1‑251 (MQ=255) ttAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATCCCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGc < 1:869112/251‑1 (MQ=255) aTCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCgg > 1:808038/1‑251 (MQ=255) gTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCActc < 1:576832/85‑1 (MQ=255) gTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAaaga < 1:667573/116‑1 (MQ=255) gTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAAc < 1:536661/150‑1 (MQ=255) gTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAaaga < 1:446134/215‑1 (MQ=255) gTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCAt > 1:899481/1‑251 (MQ=255) cAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTg > 1:302260/1‑251 (MQ=255) cATCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTGCCGCTTc > 1:117508/1‑250 (MQ=255) aTCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTGCCGCTTCCg > 1:327387/1‑251 (MQ=255) tCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAaag < 1:468959/199‑1 (MQ=255) tCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTGCCGCTTCCgg > 1:361465/1‑251 (MQ=255) tCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTGCCGCTTCCgg > 1:77228/1‑251 (MQ=255) tCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTGCCGCTTCCgg > 1:850920/1‑251 (MQ=255) tCCATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTGCCGCTTCCgg > 1:807356/1‑251 (MQ=255) ccATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATCCCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTGCCGCTTCCGGt < 1:208711/251‑1 (MQ=255) ccATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTGCCGCTTCCGGt > 1:528729/1‑251 (MQ=255) cATGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAACCCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAACCCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATCCCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTGCCGCTTCCGGtt < 1:14069/251‑1 (MQ=255) tGGGCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTGCCGCTTCCGGTtat > 1:180496/1‑251 (MQ=255) gCGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCGGGTTTCCCTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTGCCGCTTCCGGTTatat < 1:135402/250‑1 (MQ=255) cGTTCAGGCGCCGTTAGTCCCCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTCCTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTGCCGCTTCCGGTTATATTg < 1:693934/251‑1 (MQ=255) cGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAACCCCGGTTTCCCTCTCGTCGGCTTGCCGGAAAAACCCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATCCCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTGCCGCTTCCGGTTATAtt < 1:741765/250‑1 (MQ=255) cGTTCAGGCGCCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTGCCGCTTCCGGTTATATTg < 1:411385/251‑1 (MQ=255) tCAGGGGCCGTGGGTCACCGAAGAAGGGAATTTAAGTAACGGTAAACCCGGTTTCACTCTCGCCGGCTTGCCGAAAAAAACCGTAAAAGAAGCCCAAGATCGGGTGCGTAGCGCTTAACTCAGCGCCGAATTCAGATACCCCGCCAAACGCGTTACCGGCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTGCCGCTTCCGGTTATATTGATa < 1:685891/251‑1 (MQ=255) gcgcCGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAggagga > 1:383401/1‑192 (MQ=255) ccGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTc > 1:805469/1‑114 (MQ=255) ccGTTAGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTGCCGCTTCCGGTTATATTGATACGGaaaa > 1:167997/1‑251 (MQ=255) | CCTTTTCTGCGTTAAAACGAACCGGTATCGATCGTCTGGCGGCAACATTAGACGGGTGGTTTGCACCGGTTTTTGCCTAAAAAAGACGATTTCTGCGATCCCGATCGCAAAAAAGTGCGGTATGAATTTCTTTCATTTCACACTTTTTTTATGTTGTCGCTCCGCATTCCCTGTTCAGTATTACGGAGCCAAACATGTCTTTAGCCATCGTTTACAGCCGCGCATCCATGGGCGTTCAGGCGCCGTTGGTCACCATTGAAGTGCATTTAAGTAACGGTAAACCCGGTTTCACTCTCGTCGGCTTGCCGGAAAAAACCGTCAAAGAAGCCCAAGATCGGGTGCGTAGCGCCTTACTCAACGCCGAATTCAGATACCCCGCCAAACGCGTTACCGTCAATCTCGCCCCCGCCGATTTACCCAAAGAAGGAGGACGCTTCGATTTGCCCATTGCCATCGGCATGCTTGCCGCTTCCGGTTATATTGATACGGAAAA > 1/141903‑142395 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |