| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,002,291 | C→A | intergenic (‑77574/‑112817) | unknown ← / → unknown | tRNA‑Gly‑GCC/tRNA‑Met‑CAT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,002,291 | 0 | C | A | 98.8% | 236.1 / NA | 85 | intergenic (‑77574/‑112817) | unknown/unknown | tRNA‑Gly‑GCC/tRNA‑Met‑CAT |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base A (36/48); minor base G (0/1); total (36/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GGGCAACGTTTCCGCCATTGATCGCGAAAAAAATCTGGTGGTGATAAAACCTTCC‑GGCGTGGAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACACGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTCGCGTGGGGAACGGACGCCGACAACGCCGTGCATAATGCG > 1/1002051‑1002534 | gggCAACGTTTCCGCCATTGATCTCGAAAAAAATCTGGTGGTGATAAAACCTTCC‑GGCGTGGAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACTGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAg > 1:348311/1‑251 (MQ=255) aCGTTTCCGCCATTGATCGCGAAAAAAATCTGGTGGTGATAAAACCTTCC‑GGCGTGGAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCtt > 1:444501/1‑251 (MQ=255) gTTTCCGCCATTGATCGCGAAAAAAATCTGGTGGTGATAAAACCTTCC‑GGCGTGGAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTAt > 1:237918/1‑251 (MQ=255) tttCCGCCATTGATCGCGAAAAAAATCTGGTGGTGATAAAACCTTCC‑GGCGTGGAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGAAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATc < 1:531997/251‑1 (MQ=255) ccGCCATTGATCGCGAAAAAAATCTGGTGGTGATAAAACCTTCC‑GGCGTGGAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATcgc > 1:706884/1‑250 (MQ=255) cgAAAAAAATCTGGTGGTGATAAACCCTTCC‑GGCGTGGAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTAcc < 1:7812/250‑1 (MQ=255) cgAAAAAAATCTGGTGGTGATAAAACCTTCG‑GGCGTGGAATACGATGTCATGCCCGCGGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGAAAAAAACCGTCTCCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTAcc < 1:232600/250‑1 (MQ=255) cgAAAAAAATCTGGTGGTGATAAAACCTTCC‑GGCGTGGAATACGAGGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTAccc < 1:603218/251‑1 (MQ=255) caaaaaaaaTCGGGGGGTGA‑AAAACCCTCCGGGCGTGGAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAACCCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTAcc < 1:774362/248‑1 (MQ=255) aaaaTCTGGTGGTGATAAACCCTTCC‑GGCGTGGAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAACCCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGcc < 1:539830/251‑1 (MQ=255) aTCTGGTGGTAATAAACCCTTCC‑GGCGTGGAATACGATGTCATGCCCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTAccc < 1:346254/243‑1 (MQ=255) tgATAAACCCTTCC‑GGCGTGGAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTa < 1:182585/250‑1 (MQ=255) tgATAAACCCTTCC‑GGCGTGGAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGAAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTa < 1:547709/250‑1 (MQ=255) gATAAAACCTTCC‑GGCGTGGAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCCTGCCGACTATTTCTATg > 1:834175/1‑251 (MQ=255) gATAAAACCTTCC‑GGCGTGGAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATg > 1:696880/1‑251 (MQ=255) aCCTTCC‑GGCGTGGAATACGATGTCATGCCCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCCCTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTc < 1:547480/241‑1 (MQ=255) aCCTTCC‑GGCGTGGAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCa > 1:183993/1‑251 (MQ=255) gCGTGGAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTg > 1:323659/1‑250 (MQ=255) gTGGAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCa > 1:300210/1‑250 (MQ=255) tGGAATACGATGTCATGCCCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCAcc < 1:789257/251‑1 (MQ=255) gAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCa > 1:379474/1‑208 (MQ=255) gAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTc < 1:397701/241‑1 (MQ=255) tGTCATGCCCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAACCCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGa < 1:759202/251‑1 (MQ=255) tGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATg > 1:888871/1‑209 (MQ=255) gTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGa > 1:503498/1‑250 (MQ=255) tCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGAcc < 1:798998/251‑1 (MQ=255) tCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGAcc < 1:118591/251‑1 (MQ=255) ccgAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTATTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGGCACCCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGaa > 1:106566/1‑251 (MQ=255) gAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAAt > 1:152041/1‑251 (MQ=255) aaGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGAt > 1:843019/1‑170 (MQ=255) gATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCa > 1:685554/1‑251 (MQ=255) atatGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCaa > 1:527359/1‑251 (MQ=255) atatGGTGGTAGTGGATTTATTCACCGGCAAAGGGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGGGTTCCCGACCATCGGCGGAATCGTGCACCCCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTc < 1:343745/216‑1 (MQ=255) cgggtggtAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACGCGCCGCCCCACTTGGAATTGTATCGCGAGTTCCCGCCCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAgg < 1:312568/249‑1 (MQ=255) atGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAACCCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAgg < 1:124027/251‑1 (MQ=255) atGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAgg < 1:568570/251‑1 (MQ=255) ggtggtAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTc < 1:869683/212‑1 (MQ=255) aTTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAACCCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAAtt < 1:212042/250‑1 (MQ=255) ccGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCCCTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTc < 1:220099/192‑1 (MQ=255) ccGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTa < 1:44545/181‑1 (MQ=255) aaGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTATAAACCGGCAAAGtt > 1:28590/1‑251 (MQ=255) gTGGTAGAAGGCAGCAAAAACCCGTCTTCCGACACGCCGCCCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGaa < 1:363726/237‑1 (MQ=255) gTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTAt > 1:88306/1‑251 (MQ=255) gTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTAt > 1:334148/1‑251 (MQ=255) gcaAAAACCCGTCTCCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGaa < 1:591683/218‑1 (MQ=255) gcaAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGaa > 1:700458/1‑224 (MQ=255) ccGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATc < 1:567499/251‑1 (MQ=255) acGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATg < 1:450481/127‑1 (MQ=255) ccccACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCCCACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGa < 1:881845/250‑1 (MQ=255) aCCCACTTGGAATTGTATCGCGAGTTCTCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGa > 1:867561/1‑251 (MQ=255) aCCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGa > 1:886459/1‑251 (MQ=255) aCTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCa > 1:476733/1‑225 (MQ=255) aaTTGTATCCCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGc < 1:422790/250‑1 (MQ=255) aTTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACCCCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGa < 1:784673/231‑1 (MQ=255) ttCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAAtt > 1:47610/1‑170 (MQ=255) cgcccaccgccggcTTCGTGCACCCCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCCCCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCAc < 1:898403/241‑1 (MQ=255) cgaccaccgggggcaccgtccccccccATCCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCAc < 1:129641/227‑1 (MQ=255) ttaaaagagacaggTGCACCCCCTTCCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGcc < 1:188326/238‑1 (MQ=255) cATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGc > 1:685988/1‑250 (MQ=255) cccggcggCTTCGTCCCCCCCCATCCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTCCCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAACCCGGCAAAGTTATCGTGGAGCCCTTCCGCAAGCGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGccc < 1:661535/249‑1 (MQ=255) aaaaagagacagcccccATCCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTcg < 1:795783/237‑1 (MQ=255) gcATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTcgcg > 1:462215/1‑251 (MQ=255) gTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCaa < 1:203918/113‑1 (MQ=255) gTGCACACCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTCGCGTgggg > 1:260673/1‑251 (MQ=255) tgcccccccATCCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTCGCGTgggg < 1:463940/244‑1 (MQ=255) ggccccccctttCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAGGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTCGCGTgggg < 1:787294/240‑1 (MQ=255) aacaccccATCCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTCCCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGCCCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAACCCGGCAAAGTTATCGTGGAGCCCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTCGCGTGGGGaa < 1:526448/246‑1 (MQ=255) cacCCATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTCGCGTGGGGAACgg > 1:531058/1‑251 (MQ=255) ccccttccccGCCACGCTACCATCTGGTCACAGGCGGGCGAAGTTCTTATCGCCGCAGGCACTCCCCATGCCGCCTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGCCCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGCCCTTCCGCAACCGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTCGCGTGGGGAACGGa < 1:308644/244‑1 (MQ=255) cccATTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTc > 1:146129/1‑93 (MQ=255) atccccGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTg < 1:774923/209‑1 (MQ=255) aTTCCCGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTCGCGTGGGGAACGGACGc > 1:796585/1‑250 (MQ=255) cGCCACGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTCGCGTGGGGAACGGACGCCGACaa < 1:29303/251‑1 (MQ=255) cACGCTCCCATCTGGTCACAAGCGGGCGAAGATCTTATCCCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATAAATTAGAACCCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGTTCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTCGCGTGGGGAACGGACGCCGACAACGc < 1:823911/251‑1 (MQ=255) cGCTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTg < 1:308982/205‑1 (MQ=255) cTACCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTc < 1:125945/73‑1 (MQ=255) aCCATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTCGCGTGGGGAACGGACGCCAACAACGc > 1:511560/1‑245 (MQ=255) ccATCTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCCTCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTCGCGTGGGGAACGGACGCCGACAACGCCGTGCAt < 1:433429/251‑1 (MQ=255) cTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTCGCGTGGGGAACGGACGCCGACaa < 1:469767/237‑1 (MQ=255) cTGGTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTCGCGTGGGGAACGGACGCCGACAACGCCGTGCATAATg > 1:228757/1‑251 (MQ=255) ggTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGc < 1:116854/195‑1 (MQ=255) ggTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTCGCGTGGGGAACGGACGCCGACAACGCCGTGCATAATGCg > 1:160150/1‑251 (MQ=255) ggTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTCGCGTGGGGAACGGACGCCGACAACGCCGTGCATAATGCg > 1:2985/1‑251 (MQ=255) ggTCACAAGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTCGCGTGGGGAACGGACGCCGACAACGCCGTGCATAATGCg > 1:476667/1‑251 (MQ=255) ggTCACAAGCGGGCGAAGATCTTATCGCCGAAGGCACTCCCCATGCCGTCTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTg < 1:83483/194‑1 (MQ=255) | GGGCAACGTTTCCGCCATTGATCGCGAAAAAAATCTGGTGGTGATAAAACCTTCC‑GGCGTGGAATACGATGTCATGACCGCCGAAGATATGGTGGTAGTGGATTTATTCACCGGCAAAGTGGTAGAAGGCAGCAAAAAACCGTCTTCCGACACGCCGACCCACTTGGAATTGTATCGCGAGTTCCCGACCATCGGCGGCATCGTGCACACCCATTCCCGCCACGCTACCATCTGGTCACACGCGGGCGAAGATCTTATCGCCGCAGGCACTACCCATGCCGACTATTTCTATGGTTCCATTCCTTGCACCCGCAAAATGACCCCGGCGGAAATTCAAGGCGAGTATGAATTAGAAACCGGCAAAGTTATCGTGGAGACCTTCCGCAAACGCGGCATCGATCCGAAAGACGTACCTGCCGTATTGGTGCATTCCCACGGCCCATTCGCGTGGGGAACGGACGCCGACAACGCCGTGCATAATGCG > 1/1002051‑1002534 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |