| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,205,438 | (C)7→9 | intergenic (+66308/+187873) | unknown → / ← unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,205,431 | 1 | . | C | 90.0% | 101.1 / 7.8 | 40 | intergenic (+66301/+187880) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| Reads supporting (aligned to +/- strand): ref base . (4/0); new base C (16/20); total (20/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.06e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.01e-01 | |||||||||||
| * | 1 | 1,205,431 | 2 | . | C | 87.5% | 95.5 / 11.8 | 40 | intergenic (+66301/+187880) | unknown/unknown | tRNA‑Met‑CAT/tRNA‑Val‑GAC |
| Reads supporting (aligned to +/- strand): ref base . (4/1); new base C (16/19); total (20/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.42e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01 | |||||||||||
GCGGATCATTTATTCCGCGCCAGCATGACGCAAATCGCCTTTAAACACGGCGCTTTCCTGCGTAATTATATGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CG‑‑CCCCCCCTTTTTACTAACATTGATATAGG‑AAGCAAAATGTCAAATTTACAACAAC‑TTATTGAAAACGCTTTTGAAAAACGCACTGAAATTACACCAAAAACCATTGACGTACAAACCCGTGCGGCGGTTGAAGAGGTGATT‑GAAGGCTTGGACAGCGGCAAGTATCGTGTTGCCGAAAAAATCGAC‑GGCGAATGGGTGACTCACCAATGGTTGAAAAAAGCGGCCTTGTTAT > 1/1205189‑1205663 || gCGGATCATTTATTCCGCGCCAGCATGACGCAAATCGCCTTTAAACACGGCGCTTTCCTGCGTAATTATATGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑Cg < 1:577010/243‑1 (MQ=255) aTCATTTATTCCGCGCCAGCATGACGCAAATCGCCTTTAAACACGGCGCTTTCCTGCGTAATTATATGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CG‑‑ccccccccctt < 1:365144/250‑5 (MQ=255) cATTTATTCCGCGCCAGCATGACGCAAATCGCCTTTAAACACGGCGCTTTCCTGCGTAATTATATGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CG‑‑cccccccccttttt > 1:867162/1‑244 (MQ=255) cATTTATTCCGCGCCAGCATGACGCAAATCGCCTTTAAACACGGCGCTTTCCTGCGTAATTATATGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CG‑‑ccc < 1:522670/240‑1 (MQ=255) tCCGCGCCAGCATGACGCAAATCGCCTTTAAACACGGCGCTTTCCTGCGTAATTATATGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACa < 1:642887/251‑1 (MQ=255) gCATGACGCAAATCGCCTTTAAACACGGCGCTTTCCTGCGTAATTATATGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAg > 1:613909/1‑251 (MQ=255) cATGACGCAAATCGCCTTTAAACACGGCGCTTTCCTGCGTAATTATATGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAgg < 1:556314/251‑1 (MQ=255) cATGACGCAAATCGCCTTTAAACACGGCGCTTTCCTGCGTAATTATATGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAg < 1:383449/250‑1 (MQ=255) aTGACGCAAATCGCCTTTAAACACGGCGCTTTCCTGCGTAATTATATGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAGG‑a < 1:672866/251‑1 (MQ=255) aTGACGCAAATCGCCTTTAAACACGGCGCTTTCCTGCGTAATTATATGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAGG‑a < 1:187663/251‑1 (MQ=255) ttCCTGCGTAATTATATGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTTACATTTATATAGG‑AAGCAAAATGTCAAAATTACaacaacctga > 1:69374/1‑246 (MQ=255) gCGTAATTATATGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATTTTGG‑AAGCAAAAAGACAACTTTATAACAAC‑ATATTTaaaa > 1:292920/1‑251 (MQ=255) tAATTATATGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAGG‑a < 1:683959/213‑1 (MQ=255) aaTTATATGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAGG‑AAGCAAAATGTCAAATTTACAACAAC‑TTATTGAAAACGCt < 1:533749/251‑1 (MQ=255) aTTATATGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTTCTAACATTTCTATATG‑AAGCAAAATGTAAAATTTAAAAAAAC‑TTATTgttgtttctt > 1:351842/1‑242 (MQ=255) aTTATATGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTTATATTGG‑a > 1:421314/1‑211 (MQ=255) atatGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTTCTAACATTTATATAGG‑AAGCAAAATGTCAAATTTACAAAAAC‑TTATTGAAAACGCttttt > 1:777274/1‑250 (MQ=255) tgtatgATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAGG‑AAGCAAAATGTCAAATTTACAACAAC‑TTATTg < 1:688084/236‑1 (MQ=255) cACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CCCACC‑‑CCCCCCCCTTTTACTTACCTTAATATAGGAAAACAAAA‑ATCAAAATTACAACAACTTTATT‑AAAACTCTATTGAAAAACTCACTACAATTACACCAAAAAcccat > 1:328806/1‑248 (MQ=255) cACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAGG‑AAGCAAAATGTCAAATTTACAACAAC‑TTATTGAAAACGCTTTTGAAAAACGCACTGAAATTa < 1:398688/237‑1 (MQ=255) cACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCCTTTTACTAAAATTGATATAGG‑AAGAAAAACAACAAATTTAAAACAAC‑TTATTTAAAAAGATTTTGaaa > 1:95225/1‑222 (MQ=255) cTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAGG‑AAGCAAAATGTCAAATTTACAACAAC‑TTATTGAAAACGCTTTTGAAAAACGCACTGAAATTACACCAAAAACCATTGa < 1:487425/251‑1 (MQ=255) cGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAGG‑AAGCAAAATGTCAAATTTACAACAAC‑TTATTGAAAACGCTTTTGAAAAACGCACTGAAATTACACCAAAAACCATTGACGTACaa < 1:253814/251‑1 (MQ=255) aaaaCGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAGG‑AAGCAAAATGTCAAATTTACAACAAC‑TTATTGAAAACGCTTTTGAAAAACGCACTGAAATTACACCAAAAACCATTGACGTACAAAcc < 1:770802/250‑1 (MQ=255) ggAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTTCTTACATTTATATAg > 1:290236/1‑154 (MQ=255) ggCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTTATATAGG‑AAGCAAAATGACAAATTTACAACCAC‑TTATTGAAAACGCTTTTGAAAAACGCACTGAAATTACACCAAAAACCATTGACGTACAAACCCGTGcggcgggtgg > 1:140676/1‑247 (MQ=255) gCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACACCCC‑‑CC‑‑CCCCCCCCTTTTTCTCCTACTTATATAGT‑ATGCAAAAAGTCAAATTTACAACACC‑ATTTTTCAAACGCCTTTTAAAAAAGCAATTAAAATACACCAAAAACCACTCACGTACAAAcccccctcttttaaacacat > 1:133774/1‑232 (MQ=255) gTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAGG‑AAGCAAAATGTCAAATTTACAACAAC‑TTATTGAAAACGCTTTTGAAAAACGCACTGAAATTACACCAAAAACCATTGACGTACAAACCCGTGCGGCGGTTGAAGAggggg > 1:29933/1‑248 (MQ=255) cACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACACCCC‑‑CC‑‑CCCCCCCCTTTTTCTCACATTTATATAGG‑AAGCAAAAAGCCCAATTTACAACAAC‑TTATTTAAAAAGCTTTTGTAAAAAACACTGAAATTACACCAAAAAACATTTACGTACAAAACACTGCGGCGGTTGTAGAggagaattaa > 1:244908/1‑243 (MQ=255) cACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTTCTAAAATTGATATAGG‑AAGCAAAATGTCAAATTTACAAAAAC‑TTATTTAAAAAGATTTTTTAAAAAGCACTGAAATTAAACCAAAAAAAATTTACGAACAAAATCGTGCGGCGGTTGaaaggggggttgaa > 1:221628/1‑239 (MQ=255) cACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAGG‑AAGCAAAATGTCAAATTTACAACAAC‑TTATTGAAAACGCTTTTGAAAAACGCACTGAAATTACACCAAAAACCATTGACGTACAAACCCGTGCGGCGGTTGAAGAGGTGATT‑Gaa < 1:536102/251‑1 (MQ=255) cGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAGG‑AAGCAAAATGTCAAATTTACAACAAC‑TTATTGAAAACGCTTTTGAAAAACGCACTGAAATTACACCAAAAACCATTGACGTACAAACCCGTGCGGCGGTTGAAGAGGTGATT‑GAAgg < 1:806928/251‑1 (MQ=255) cGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAGG‑AAGCAAAATGTCAAATTTACAACAAC‑TTATTGAAAACGCTTTTGAAAAACGCACTGAAATTACACCAAAAACCAATTACGTACAAACCCGTGCGGCGGTTGAAGAGGGGATT‑Gaaag > 1:622811/1‑249 (MQ=255) aCAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CG‑‑ccccc < 1:37799/106‑1 (MQ=255) ataatGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAGG‑AAGCAAAATGTCAAATTTACAAAAAC‑TTATTTAAAACGCTTTTGAAAAAAGCACTGAAATTACAACAAAAACAATTAACGTACAAACACATGCGGCGGGTGAAGAAGGGATT‑GAAGGCTTgg > 1:373522/1‑251 (MQ=255) ataatGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCCTTTTTCTTACATTTCTATAGG‑AAGAAAAATGTTAAATTTACAACAAC‑TTATTTAAAAAGCTTTTTTAAAACGCACTGAAAATACACCAAAAAACATTGACGTACAAACCCAAGCCGCGGTTGGAGGGGGGATA‑GAAGGCtgtt > 1:448571/1‑248 (MQ=255) cGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGC‑CCCCCCCTTTTTACTAACATTGATATAGG‑AAGCAAAATGTCAAATTTACAACAAC‑TTATTGAAAACGCTTTTGAAAAACGCACTGAAATTACACCAAAAACCATTGACGTACAAACCCGTGCGGCGGTTGAAGAGGTGATT‑GAAGGCTTGGAc < 1:343970/224‑1 (MQ=255) ttGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTTATATAGG‑AAGCAAAATGTCAAATTTACAACAAC‑TTATTGAAAAAGCTTTTGAAAAAAGCACTGAAATTACAACAAAAAAAATTGACGTACAAACCCGTGCGGCGGGTGAAGAGGGGATT‑TAAAGCTTGGACAGAGGCAAGAAACGTGTTGCCGaaaaaaaaga > 1:263473/1‑246 (MQ=255) tGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CG‑‑ccc < 1:665089/65‑1 (MQ=255) aTTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAGG‑AAGCAAAATGTCAAATTTACAACAAC‑TTATTGAAAACGCTTTTGAAAAACGCACTGAAATTACACCAAAAACCATTGACGTACAAACCCGTGCGGCGGTTGAAGAGGTGATT‑GAAGGCTTGGACAGCGGCAAGTATCGTGTTGCCGAAAAAATCGAC‑GGCGAATGGGTGAc < 1:431511/251‑1 (MQ=255) aTTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAGG‑AAGCAAAATGTCAAATTTACAACAAC‑TTATTGAAAACGCTTTTGAAAAACGCACTGAAATTACACCAAAAACCATTGACGTACAAACCCGTGCGGCGGTTGAAGAGGTGATT‑GAAGGCTTGGACAGCGGCAAGTATCGTGTTGCCGAAAAAATCGAC‑GGCGAATGGGTGAc < 1:280397/251‑1 (MQ=255) gAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACATCCC‑‑CC‑‑CCCCCCCCCTTTTTTAACATTTTTATAAA‑GATCAAAAAGTCAAAATTACAAAAAA‑TTTTTTTTAACACTTTTGAAAAACACTATCAAAATACACCCAAAACCATTTACGTACAAAACCATGCGGTGGTTGTAGAGGGGATTAAAAGGTTTGG‑CAGTGGGAAGTATTGTGTTGCCCCAAAAATCCAC‑GGccaagtcgggactca > 1:709177/1‑237 (MQ=255) ttttCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAg < 1:35239/65‑1 (MQ=255) ttCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAGG‑AAGCAAAATGTCAAATTTACAACAAC‑TTATTGAAAACGCTTTTGAAAAACGCACTGAAATTACACCAAAAACCATTGACGTACAAACCCGTGCGGCGGTTGAAGAGGTGATT‑GAAGGCTTGGACAGCGGCAAGTATCGTGTTGCCGAAAAAATCGAC‑GGCGAATGGGTGACTCACCAATGGTTGaaa < 1:887497/251‑1 (MQ=255) aTTGAATTTGCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAGG‑AAGCAAAATGTCAAATTTACAACAAC‑TTATTGAAAACGCTTTTGAAAAACGCACTGAAATTACACCAAAAACCATTGACGTACAAACCCGTGCGGCGGTTGAAGAGGTGATT‑GAAGGCTTGGACAGCGGCAAGTATCGTGTTGCCGAAAAAATCGAC‑GGCGAATGGGTGACTCACCAATGGTTGAAAAAAGCgg < 1:865650/251‑1 (MQ=255) gCAACGACGAACA‑‑CC‑‑CGCCCCCCCCCTTTTTACTAACATTGATATAAG‑AAGCAAAAAGTCAAAATTACAACAAC‑TTATTTAAAACGCTTTTTAAAAAAGCACTGAAAATAAAACAAAAAACATTGACGGACAAACCCGTGCGGCGGGTGGAGAGGGGATT‑GAAAGGTTGGGCAGCGGGAAGAATCGGGTTGGCGGAAAAAAAGACGGGGGAAGGGGGGA‑TCACCAAAGGGTGAAAAAAACGGGCTTTTTAt > 1:604330/1‑251 (MQ=255) || GCGGATCATTTATTCCGCGCCAGCATGACGCAAATCGCCTTTAAACACGGCGCTTTCCTGCGTAATTATATGTATGATTTTATCAACTATTTTTCACCGCACTTAACCCGTGAAAACGTGGAACGGGCAGAGCGTATGCACGACAATAATGCGGTGAAAAGATTATTTGATGACGTCAGATTGCAAACTTTGTAATTGAAAAGTTGGCTTTTCGCACATTGAATTTGCAACGACGAACA‑‑CC‑‑CG‑‑CCCCCCCTTTTTACTAACATTGATATAGG‑AAGCAAAATGTCAAATTTACAACAAC‑TTATTGAAAACGCTTTTGAAAAACGCACTGAAATTACACCAAAAACCATTGACGTACAAACCCGTGCGGCGGTTGAAGAGGTGATT‑GAAGGCTTGGACAGCGGCAAGTATCGTGTTGCCGAAAAAATCGAC‑GGCGAATGGGTGACTCACCAATGGTTGAAAAAAGCGGCCTTGTTAT > 1/1205189‑1205663 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |