Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	149,812	C→A	intergenic (+60/‑7)	unknown → / → unknown	Phage protein/Phage protein (ACLAME 1194)

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	149,812	0	C	A	100.0%	158.6 / NA	59	intergenic (+60/‑7)	unknown/unknown	Phage protein/Phage protein (ACLAME 1194)
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (34/25);  total (34/25)

ATTTAAAAGATACTATTTTGTCCGTTGATACAGACAAAGCGTTTCTAATAATTTTCCCACAGTGGGAATCGCAGCTACTGGAAAGTTTGCCGCCCCGTAAAGCGGGACTACCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGACAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTATTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGACCTATCATGTGTTGTCTCGCTTTGGCAAGACAAGCCCGAACAGTTTGATTTAGAT  >  1/149589‑150040                                                                                                                                                                                                                                |                                                                                                                                                                                                                                     ttttAAAAGATACTATTTTGCCCGTTGATCCAGAAAAGGCGTTTTTAAAAATTTCCCCACAGGGGGAACCGCAGCTAGTGAAAAGTTTGCCGCCCCGAAAAGCGGGACTCCCTGCTACCCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGaaaaa                                                                                                                                                                                                           <  1:106170/250‑1 (MQ=11) aTTTAAAAGATACTATTTTGTCCGTTGATACAGACAAAGCGTTTCTAATAATTTTCCCACAGTGGGAATCGCAGCTACTGGAAAGTTTGCCGCCCCGTAAAGCGGGACTACCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGaaaaa                                                                                                                                                                                                           >  1:812229/1‑251 (MQ=18)               aTTTTGTCCGTTGATACAGACAAAGCGTTTCTAATAATTTTCCCACAGTGGGAATCGCAGCTACTGGAAAGTTTGCCGCCCCGTAAAGCGGGACTACCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTaaa                                                                                                                                                                                             >  1:199340/1‑251 (MQ=18)               aTTTTGTCCGTTGATACAGACAAAGCGTTTCTAATAATTTTCCCACAGTGGGAATCGCAGCTACTGGAAAGTTTGCCGCCCCGTAAAGCGGGACTACCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGCTGAATGAACAAGAAAAACACGCGTTTTTaaa                                                                                                                                                                                             >  1:299602/1‑251 (MQ=18)                       cGTTGATACAGACAAAGCGTTTCTAATAATTTTCCCACAGTGGGAATCGCAGCTACTGGAAAGTTTGCCGCCCCGTAAAGCGGGACTACCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAAtt                                                                                                                                                                                     >  1:116227/1‑251 (MQ=18)                           gATACAGACAAAGCGTTTCTAATAATTTTCCCACAGTGGGAATCGCAGCTACTGGAAAGTTTGCCGCCCCGTAAAGCGGGACTACCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACgg                                                                                                                                                                                 >  1:477918/1‑251 (MQ=18)                           gATACAGACAAAGCGTTTCTAATAATTTTCCCACAGTGGGAATCGCAGCTACTGGAAAGTTTGCCGCCCCGTAAAGCGGGACTACCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACgg                                                                                                                                                                                 >  1:404272/1‑251 (MQ=18)                           gATACAGACAAAGCGTTTCTAATAATTTTCCCACAGTGGGAATCGCAGCTACTGGAAAGTTTGCCGCCCCGTAAAGCGGGACTACCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTT‑TTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGt                                                                                                                                                                                >  1:891697/1‑251 (MQ=18)                                         gTTTCTAATAATTTTCCCACAGTGGGAATCGCAGCTACTGGAAAGTTTGCCGCCCCGTAAAGCGGGACTACCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCgg                                                                                                                                                                   >  1:327782/1‑251 (MQ=38)                                             cTAATAATTTCCCCACAGTGGAAATCGCAGCTACGGAAAAGTTTGCCGCCCCGTAAGGCGGGACTCCCTGCTACCCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGa                                                                                                                                                               <  1:808589/251‑1 (MQ=14)                                                    ttttCCCACAGTGGGAATCGCAGCTACTGGAAAGTTTGCCGCCCCGTAAAGCGGGACTACCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTAtc                                                                                                                                                                             >  1:652294/1‑229 (MQ=18)                                                        cccACAGTGGGAATCGCAGCTACTGGAAAGTTTGCCGCCCCGTAAAGCGGGACTACCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTtgaatga                                                                                                                                                                                                                     >  1:581445/1‑186 (MQ=21)                                                        cccACAGGGGGAATCGCAGCTACGGAAAAGTTTGCCGCCCCGTAAAGGGGGACTACCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAAc                                                                                                                                                    <  1:852703/251‑1 (MQ=255)                                                              gggggAACCGCAGCTACGGGAAAGTTTGCCGCCCCGAAAAGCGGAACTCCCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAg                                                                                                                                                           <  1:367973/236‑1 (MQ=14)                                                                             aCTGGAAAGTTTGCCGCCCCGTAAAGCGGGACTACCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGa                                                                                                                                                                            >  1:415556/1‑206 (MQ=25)                                                                             aCTGGAAAGTTTGCCGCCCCGTAAAGCGGGACTACCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACt                                                                                                                                >  1:857696/1‑250 (MQ=255)                                                                             aCTGGAAAGTTTGCCGCCCCGTAAAGCGGGACTACCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACt                                                                                                                                >  1:557277/1‑250 (MQ=255)                                                                                                  aaaggCGGGACTCCCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTgg                                                                                                          <  1:701620/247‑1 (MQ=255)                                                                                                         ggACTACCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTGCGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTtcttat                                                                                                   >  1:445063/1‑251 (MQ=255)                                                                                                              aCCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCa                                                                                              >  1:801944/1‑251 (MQ=255)                                                                                                              aCCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCa                                                                                              >  1:669634/1‑251 (MQ=255)                                                                                                               ccTGCTCCTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCag                                                                                             <  1:98062/251‑1 (MQ=255)                                                                                                                cTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGt                                                                                                         >  1:792559/1‑238 (MQ=255)                                                                                                                cTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCaga                                                                                            >  1:726462/1‑251 (MQ=255)                                                                                                                     aCTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGa                                                                                       >  1:682918/1‑251 (MQ=255)                                                                                                                         ccgccgATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGAt                                                                                   <  1:400355/251‑1 (MQ=255)                                                                                                                            ccgATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCag                                                                                             >  1:508912/1‑238 (MQ=255)                                                                                                                                   atcgtatcTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGc                                                                         <  1:117586/251‑1 (MQ=255)                                                                                                                                        atcTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTg                                                                                                                                         <  1:28237/182‑1 (MQ=255)                                                                                                                                          cTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGa                                                                   >  1:736135/1‑250 (MQ=255)                                                                                                                                          cTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGAc                                                                  <  1:530863/251‑1 (MQ=255)                                                                                                                                               cAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGAc                                                              >  1:98372/1‑250 (MQ=255)                                                                                                                                                  aTACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGt                                                                                                                                                                                                                            <  1:170429/89‑1 (MQ=25)                                                                                                                                                  aTACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAgg                                                          >  1:784652/1‑251 (MQ=255)                                                                                                                                                    aCAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCGCCAGAGGTGGCGATTGGTCGTTGCAGTGGACTGACCAGGAc                                                        <  1:107583/251‑1 (MQ=255)                                                                                                                                                              gAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTAttt                                                                                                            <  1:111321/189‑1 (MQ=255)                                                                                                                                                              gAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGAc                                                                  >  1:473504/1‑231 (MQ=255)                                                                                                                                                              gAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGACCTATCAtgtg                                              >  1:832155/1‑251 (MQ=255)                                                                                                                                                               aaaTAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGACCTATCATgtgt                                             <  1:403018/251‑1 (MQ=255)                                                                                                                                                                  tAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGACCTATCATGtgttgt                                          <  1:313394/251‑1 (MQ=255)                                                                                                                                                                        acCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTc                                                                              <  1:333373/209‑1 (MQ=255)                                                                                                                                                                        acCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGAcc                                                             <  1:708760/226‑1 (MQ=255)                                                                                                                                                                        acCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGACCTATCATGTGTTGTCTCg                                      >  1:833726/1‑249 (MQ=255)                                                                                                                                                                             aaccaaccCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGAc                                                        <  1:93855/226‑1 (MQ=255)                                                                                                                                                                             aaccaaccCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGAc                                                        >  1:222117/1‑226 (MQ=255)                                                                                                                                                                               ccaaccCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGACCTATCATGTGTTGTCTCGCTTTGGCaa                             <  1:869862/251‑1 (MQ=255)                                                                                                                                                                                  accCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGACCTATCATGTGTTGTCTCGCTTTGGCAAGa                           >  1:782192/1‑250 (MQ=255)                                                                                                                                                                                   ccccAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAgtg                                                                                                                                                         >  1:895696/1‑123 (MQ=255)                                                                                                                                                                                   ccccAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGACCTATCATGTGTTGTCTCGCTTTGGCAAGACa                         >  1:587067/1‑251 (MQ=255)                                                                                                                                                                                   ccccAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGACCTATCATGTGTTGTCTCGCTTTGGCAAGACa                         >  1:540849/1‑251 (MQ=255)                                                                                                                                                                                          cccTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGACCTATCATGTGTTGTCTCGCTTTGGCAAGACAAGCCCGa                  >  1:602270/1‑251 (MQ=255)                                                                                                                                                                                            cTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGAc                                                        <  1:700122/211‑1 (MQ=255)                                                                                                                                                                                            cTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGACCTATCATGTGTTGTCTCGCTTTGGCAAGACAAGCCCGaa                 >  1:347519/1‑250 (MQ=255)                                                                                                                                                                                            cTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGACCTATCATGTGTTGTCTCGCTTTGGCAAGACAAGCCCGAAc                <  1:7423/251‑1 (MQ=255)                                                                                                                                                                                            cTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGACCTATCATGTGTTGTCTCGCTTTGGCAAGACAAGCCCGAAc                <  1:115129/251‑1 (MQ=255)                                                                                                                                                                                                        gCCTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTTGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGt                                                                            <  1:587807/179‑1 (MQ=255)                                                                                                                                                                                                          cTTTTTATTTCCGAAAAAAGGAAAATAAAAAGTTGAATGAAAAAGAAAAAAACCCGTTTTTCAATGGCAATTACGGTATGAGGCAATCCGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCCCCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGACCTATCATGTGTTGTCTCGCTTTGGCAAGACAAGCCCGAACCGTTTGATTTAGAt  <  1:291177/251‑1 (MQ=14)                                                                                                                                                                                                          cTTTTTATTACTCAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGACCTATCATGTGTTGTCTCGCTTTGGCAAGACAAGCCCGAACCGTTTGATTTAGAt  <  1:75066/251‑1 (MQ=255)                                                                                                                                                                                                                      cAAAAAAGGAAAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTCTTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGACCTATCATGTGTTGTCTCGCTTTGGCAAGACAAGCCCGAAc                >  1:773311/1‑225 (MQ=255)                                                                                                                                                                                                                                |                                                                                                                                                                                                                                     ATTTAAAAGATACTATTTTGTCCGTTGATACAGACAAAGCGTTTCTAATAATTTTCCCACAGTGGGAATCGCAGCTACTGGAAAGTTTGCCGCCCCGTAAAGCGGGACTACCTGCTACTCCCGCCGATGTATCGTATCTAGACAAATACAAGCCAAAGAAATAAACAACCCTAACCAACCCCAAGCCCTCCACGTGAGGGCCTTTTTATTACTCAAAAAAGGACAATAAAATGTTGAATGAACAAGAAAAACACGCGTTTTTAAATGGCAATTACGGTATGACGCAATCGGGGGATAAGTGTAAACTGGTGTTAGTGGGCGAAACTCACCGAGATAATCCGTATTTGGTTATTATCACCAGAGGTGACGATTGGTCGTTGCAGTGGACTGACCAGGACCTATCATGTGTTGTCTCGCTTTGGCAAGACAAGCCCGAACAGTTTGATTTAGAT  >  1/149589‑150040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑