| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 828,837 | C→T | intergenic (+150/‑36) | unknown → / → unknown | hypothetical protein/DNA‑directed RNA polymerase specialized sigma subunit, sigma24‑like |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 828,837 | 0 | C | T | 100.0% | 82.9 / NA | 30 | intergenic (+150/‑36) | unknown/unknown | hypothetical protein/DNA‑directed RNA polymerase specialized sigma subunit, sigma24‑like |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (17/13); total (17/13) | |||||||||||
TCATAAAAAAGACAAAATGATGAAAGACGGTAAGTCCATGGACCATAAAATGGACAAGGAAATGAAAGATCACAAAATGTAATTTTCACTCCAAGTCATTATAAATAATCACTTATTTTGGACTTGTGGTGAACAAGTCCTTTTTTTGCAAAAATCTTAGCCTGCTGCTGAATTTAATTATTTATTTTTAAGATATTATAGGTGCATTGTATTATATGATGGTAGAATACTCTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTGAAAGCGTATCAACATGCGACCTCATTTAAAGGGGCTTCTGCGCTGAAAACCTGGTTTTTTGCCATTTTGAAGAA > 1/828606‑829075 | tCATAAAAAAGACAAAATGATGAAAGACGGTAAGTCCATGGACCATAAAATGGACAAGGAAATGAAAGATCACAAAATGTAATTTTCACTCCAAGTCATTATAAATAATCACTTATTTTGGACTTGTGGTGAACAAGTCCTTTTTTTGCAAAAATCTTAGCCTGCTGCTGAATTTAATTATTTATTTTTAAGATATTATAGGTGCATTGTATTATATGATGGTAGAATActttcttt < 1:830770/237‑1 (MQ=255) aTTTTGGACTTGTGGTGAACAAGTCCTTTTTTTGCAAAAATCTTAGCCTGCTGCTGAATTTAATTATTTATTTTTAAGATATTATAGGTGCATTGTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGAttt > 1:104889/1‑251 (MQ=255) aTTTTGGACTTGTGGTGAACAAGTCCTTTTTTTGCAAAAATCTTAGCCTGCTGCTGAATTTAATTATTTATTTTTAAGATATTATAGGCGCATTGTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGAttt > 1:176938/1‑251 (MQ=255) ttttGGACTTGTGGTGAACAAGTCCTTTTTTTGCAAAAATCTTAGCCTGCTGCTGAATTTAATTATTTATTTTTAAGATATTATAGGTGCATTGTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGa < 1:726767/241‑1 (MQ=255) tGGACTTGTGGTGAACAAGTCCTTTTTTTGCAAAAATCTTAGCCTGCTGCTGAATTTAATTATTTATTTTTAAGATATTATAGGTGCATTGTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCg < 1:544493/251‑1 (MQ=255) ttGCAAAAATCTTAGCCTGCTGCTGAATTTAATTATTTATTTTTAAGATATTATAGGTGCATTGTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTg < 1:53960/251‑1 (MQ=255) aTCTTAGCCTGCTGCTGAATTTAATTATTTATTTTTAAGATATTATAGGTGCATTGTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTGAAAGCGTa > 1:736334/1‑251 (MQ=255) aGATATTATAGGTGCATTGTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAgg > 1:173089/1‑120 (MQ=255) gATATTATAGGTGCATTGTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTGAAAGCGTATCAACATGCGACCTCATTTAAAGGGGCTTCTGCGCTGa > 1:36186/1‑251 (MQ=255) attatAGGTGCATTGTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGtt < 1:360031/156‑1 (MQ=255) attatAGGTGCATTGTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTGAAAGCGTATCAACATGCGACCTCATTTAAAGGGGCTTCTGCGCTGaaaa > 1:527794/1‑251 (MQ=255) tataGGTGCATTGTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAgg < 1:850337/158‑1 (MQ=255) gCATTGTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTGAAAGCGTATCAACATGCGACCTCATTTAAAGGGGCTTCTgc > 1:285062/1‑234 (MQ=255) gTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGTAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTGAAAGCGTATCAACATGCGACCTCATTTAAAGGGGCTTCTGCGCTGAAAACCGGGTTTTTTGc > 1:31479/1‑250 (MQ=255) gTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAg < 1:776000/165‑1 (MQ=255) gTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGt < 1:693683/169‑1 (MQ=255) gTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGaa > 1:765219/1‑179 (MQ=255) gTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTGAAAGCGt < 1:346638/195‑1 (MQ=255) gTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTGAAAGCGTATCaa < 1:247026/200‑1 (MQ=255) gTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTGAAAGCGTATCAACATGCGACCTCATTTAAAgg < 1:747875/220‑1 (MQ=255) gTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTGAAAGCGTATCAACATGCGACCTCATTTAAAGGGGCTTCTGCGCTGaaa < 1:795259/236‑1 (MQ=255) gTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTGAAAGCGTATCAACATGCGACCTCATTTAAAGGGGCTTCTGCGCTGAAAACCTGGTTTTTTGc > 1:343255/1‑250 (MQ=255) gTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTGAAAGCGTATCAACATGCGACCTCATTTAAAGGGGCTTCTGCGCTGAAAACCTGGTTTTTTGc > 1:649643/1‑250 (MQ=255) gTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTGAAAGCGTATCAACATGCGACCTCATTTAAAGGGGCTTCTGCGCTGAAAACCTGGTTTTTTGc > 1:545403/1‑250 (MQ=255) gTATTATATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTGAAAGCGTATCAACATGCGACCTCATTTAAAGGGGCTTCTGCGCTGAAAACCTGGTTTTTTGc > 1:357017/1‑250 (MQ=255) attatATGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTGAAAGCGTATCAACATGCGACCTCATTTAAAGGGGCTTCTGCGCTGAAAACCTGGTTTTTTGCCAt > 1:624021/1‑251 (MQ=255) atatGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCAc < 1:263096/128‑1 (MQ=255) atatGATGGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTGAAAGCGTATCAACATg < 1:253411/199‑1 (MQ=255) tgGTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTGAAAGCGTATCAACATGCGACCTCATTTAAAGGGGCTTCTGCGCTGAAAACCTGGTTTTTTGCCATTTTgaagaa > 1:59185/1‑251 (MQ=255) gTAGAATACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAAcc > 1:296062/1‑169 (MQ=255) aTACTTTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTg > 1:713729/1‑170 (MQ=255) | TCATAAAAAAGACAAAATGATGAAAGACGGTAAGTCCATGGACCATAAAATGGACAAGGAAATGAAAGATCACAAAATGTAATTTTCACTCCAAGTCATTATAAATAATCACTTATTTTGGACTTGTGGTGAACAAGTCCTTTTTTTGCAAAAATCTTAGCCTGCTGCTGAATTTAATTATTTATTTTTAAGATATTATAGGTGCATTGTATTATATGATGGTAGAATACTCTCTTTTCTACTCATTAAAATAAAATGGACTCAACAATGCAATTTTCTTTTCAACACATTTCATCTCAAGAAATTGAGGATATTCGCCGGCAGATGCTGAAATTTGCCACTTTACAGTTAAGGGACGAAGATTTAGCGGAAGATGTCGTGCAGGAAACCTTAGTGAAAGCGTATCAACATGCGACCTCATTTAAAGGGGCTTCTGCGCTGAAAACCTGGTTTTTTGCCATTTTGAAGAA > 1/828606‑829075 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |