Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 644,612 T→C G15G (GGA→GGG)  unknown ← cell filamentation‑like protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1644,6120TC100.0% 201.4 / NA 69G15G (GGA→GGG) unknowncell filamentation‑like protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (31/38);  total (31/38)

CTTCTACAGTTATGCCTTTTTGGTTGTATATCCTTATGCGTTGCCAGTCCCTCAAGAGCTTTTGAAAGCTGGCTATCTTTCTTTAGCAGATCATCTGCTCTTACTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGTCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTAAGTGCATCGTCCTCTCGAATATAATTAAGTAGCTCATTGAGCTGCTCTTCGTTTTTTTTCGGCTTTGCCTGAAAAAAGTTTTATATG  >  1/644373‑644858
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                      
cTTCTACAGTTATGCCTTTTTGGTTGTATATCCTTATGCGTTGCCAGTCCCTCAAGAGCTTTTGAAAGCTGGCTATCTTTCTTTAGCAGATCATCTGCTCTTACTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAAt                                                                                                                                                                                                                                              >  1:18519/1‑250 (MQ=255)
cTTCTACAGTTATGCCTTTTTGGTTGTATATCCTTATGCGTTGCCAGTCCCTCAAGAGCTTTTGAAAGCTGGCTATCTTTCTTTAGCAGATCATCTGCTCTTACTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATc                                                                                                                                                                                                                                             <  1:323371/251‑1 (MQ=255)
        gTTATGCCTTTTTGGTTGTATATCCTTATGCGTTGCCAGTCCCTCAAGAGCTTTTGAAAGCTGGCTATCTTTCTTTAGCAGATCATCTGCTCTTACTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTAt                                                                                                                                                                                                                                     >  1:494406/1‑251 (MQ=255)
                           atatCCTTATGCGTTGCCAGTCCCTCAAGAGCTTTTGAAAGCTGGCTATCTTTCTTTAGCAGATCATCTGCTCTTACTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAg                                                                                                                                                                                                                      <  1:32534/247‑1 (MQ=255)
                             atCCTTATGCGTTGCCAGTCCCTCAAGAGCTTTTGAAAGCTGGCTATCTTTCTTTAGCAGATCATCTGCTCTTACTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTtat                                                                                                                                                                                                                                                 <  1:862819/218‑1 (MQ=255)
                                  tATGCGTTGCCAGTCCCTCAAGAGCTTTTGAAAGCTGGCTATCTTTCTTTAGCAGATCATCTGCTCTTACTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCAtt                                                                                                                                                                                                           <  1:618953/251‑1 (MQ=255)
                                        ttGCCAGTCCCTCAAGAGCTTTTGAAAGCTGGCTATCTTTCTTTAGCAGATCATCTGCTCTTACTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATttctt                                                                                                                                                                                                       >  1:698325/1‑249 (MQ=255)
                                              gTCCCTCAAGAGCTTTTGAAAGCTGGCTATCTTTCTTTAGCAGATTATCTGCTCTTACTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGa                                                                                                                                                                                                                                   <  1:445575/215‑1 (MQ=255)
                                                  cTCAAGAGCTTTTGAAAGCTGGCTATCTTTCTTTAGCAGATCATCTGCTCTTACTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGttt                                                                                                                                                                                           <  1:773285/251‑1 (MQ=255)
                                                          cTTTTGAAAGCTGGCTATCTTTCTTTAGCAGATCATCTGCTCTTACTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATCATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCaaaa                                                                                                                                                                                   >  1:444115/1‑251 (MQ=255)
                                                                           tctttcttTAGCAGATCATCTGCTCTTACTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATttc                                                                                                                                                                                                         >  1:235262/1‑212 (MQ=255)
                                                                                      cAGATCATCTGCTCTTACTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTa                                                                                                                                                       >  1:600540/1‑251 (MQ=255)
                                                                                           catcTGCTCTTACTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAAt                                                                                                                                                                                                                                              >  1:774048/1‑159 (MQ=255)
                                                                                                 ctctTACTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATcac                                                                                                                                                                                                                                           <  1:481438/156‑1 (MQ=255)
                                                                                                 ctctTACTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATc                                                                                                                                                                                                                                             >  1:142156/1‑154 (MQ=255)
                                                                                                     tACTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGa                                                                                                                                        >  1:758310/1‑251 (MQ=255)
                                                                                                       cTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGAtt                                                                                                                                      <  1:670456/251‑1 (MQ=255)
                                                                                                         ccATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCg                                                                                                                                    >  1:38225/1‑251 (MQ=255)
                                                                                                           aTTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGtt                                                                                                                                  >  1:228012/1‑251 (MQ=255)
                                                                                                            tttACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTtg                                                                                                                                 <  1:663479/251‑1 (MQ=255)
                                                                                                              tACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATaa                                                                                                                                           >  1:126992/1‑239 (MQ=255)
                                                                                                                cTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTtat                                                                                                                                                                                                                                                 <  1:650556/135‑1 (MQ=255)
                                                                                                                        tcatAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTtg                                                                                                                                 <  1:657541/239‑1 (MQ=255)
                                                                                                                        tcatAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGtt                                                                                                                     >  1:19582/1‑251 (MQ=255)
                                                                                                                        tcatAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGtt                                                                                                                     >  1:885299/1‑251 (MQ=255)
                                                                                                                                      tCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAg                                                                                                       <  1:98235/251‑1 (MQ=255)
                                                                                                                                        cTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAggg                                                                                                     <  1:41382/251‑1 (MQ=255)
                                                                                                                                                                         aaTCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTagccagcc                                                                                                                                                                 >  1:153545/1‑158 (MQ=255)
                                                                                                                                                                         aaTCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGa                                                                                                                                        >  1:508331/1‑183 (MQ=255)
                                                                                                                                                                          aTCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTc                                                                                                                                                                           <  1:346869/147‑1 (MQ=255)
                                                                                                                                                                           tCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGtat                                                                                                <  1:267158/221‑1 (MQ=255)
                                                                                                                                                                              aTTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTcccc                                                                                                                 <  1:668540/201‑1 (MQ=255)
                                                                                                                                                                              aTTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAggg                                                                                                     <  1:884444/213‑1 (MQ=255)
                                                                                                                                                                              aTTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatt                                                                                      <  1:560087‑M2/228‑5 (MQ=255)
                                                                                                                                                                                                   tttAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatctacccgcaattttatcag                                              >  1:546241‑M2/1‑203 (MQ=255)
                                                                                                                                                                                                     tAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTgtgt                                                                                                                              >  1:652729/1‑165 (MQ=255)
                                                                                                                                                                                                       gagaTAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGc                                                                                             <  1:868932/196‑1 (MQ=255)
                                                                                                                                                                                                        agaTAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAg                                                                                                                                         >  1:356655/1‑151 (MQ=255)
                                                                                                                                                                                                        agaTAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAg                                                                                              >  1:204769/1‑194 (MQ=255)
                                                                                                                                                                                                        agaTAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAg                                                                                              >  1:554831/1‑194 (MQ=255)
                                                                                                                                                                                                        agaTAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttc                                                                                    >  1:542734‑M2/1‑198 (MQ=255)
                                                                                                                                                                                                         gaTAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatctacccgcaattttatcagactctgtttt                                    <  1:409195‑M2/251‑55 (MQ=255)
                                                                                                                                                                                                         gaTAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagc                                                                     >  1:54420‑M2/1‑197 (MQ=255)
                                                                                                                                                                                                          aTAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAg                                                                                                       <  1:377409/183‑1 (MQ=255)
                                                                                                                                                                                                          aTAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGc                                                                                             <  1:369064/193‑1 (MQ=255)
                                                                                                                                                                                                          aTAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatctacccgcaattttatcagactctgtttt                                    <  1:282310‑M2/250‑55 (MQ=255)
                                                                                                                                                                                                          aTAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatctacccgcaattttatcagactctgttt                                     >  1:310604‑M2/1‑196 (MQ=255)
                                                                                                                                                                                                          aTAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatc                                                                >  1:103696‑M2/1‑196 (MQ=255)
                                                                                                                                                                                                            agagGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGAtt                                                                                                                                      >  1:813731/1‑150 (MQ=255)
                                                                                                                                                                                                            agagGAGTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatctacccgcaattttatcagactctgttt                                     >  1:857203‑M2/1‑194 (MQ=255)
                                                                                                                                                                                                               ggagTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatctacccgcaattttatcagactctgttttcttcaa                              <  1:174474‑M2/251‑61 (MQ=255)
                                                                                                                                                                                                                gagTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatctacccgcaattttatcagactctgttttcttcaaa                             <  1:2440‑M2/251‑62 (MQ=255)
                                                                                                                                                                                                                gagTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatctacccgcaattttatcagactctgttttcttcaaa                             <  1:825118‑M2/251‑62 (MQ=255)
                                                                                                                                                                                                                gagTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatctacccgcaattttatcagactctgttttcttcaaa                             <  1:796764‑M2/251‑62 (MQ=255)
                                                                                                                                                                                                                 agTTAGCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatctacccgcaattttatcagactctgttttcttcaaaa                            <  1:58358‑M2/251‑63 (MQ=255)
                                                                                                                                                                                                                      gCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAg                                                                                                                                         <  1:569476/137‑1 (MQ=255)
                                                                                                                                                                                                                      gCCCTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatctacccgcaattttatcagactctgttttcttcaaaaattg                        <  1:633427‑M2/250‑67 (MQ=255)
                                                                                                                                                                                                                         cTTTTTCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagc                                                                     <  1:878199‑M2/202‑22 (MQ=255)
                                                                                                                                                                                                                             ttCGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAg                                                                                                       >  1:635742/1‑164 (MQ=255)
                                                                                                                                                                                                                               cGATAATATTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATttc                                                                                                                                                                                                         <  1:19911/64‑1 (MQ=255)
                                                                                                                                                                                                                                 ataataTTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAg                                                                                                                                         <  1:483873/126‑1 (MQ=255)
                                                                                                                                                                                                                                 ataataTTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatctacccgcaattttatcagactctgttttcttcaaaaattgctcatttttgag            >  1:501476‑M2/1‑173 (MQ=255)
                                                                                                                                                                                                                                      atTCTCAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatctacccgcaattttatcagactctgttttcttcaaaaattgctcatttttgagttctt       <  1:534268‑M2/251‑84 (MQ=255)
                                                                                                                                                                                                                                        tctcAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatctacccgcaattttatcagactctgttttcttcaaaaattgctcatttttgagttcttta     <  1:361506‑M2/251‑86 (MQ=255)
                                                                                                                                                                                                                                        tctcAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatctacccgcaattttatcagactctgttttcttcaaaaattgctcatttttgagttcttta     <  1:349591‑M2/251‑86 (MQ=255)
                                                                                                                                                                                                                                         ctcAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAg                                                                                                       <  1:496381/152‑1 (MQ=255)
                                                                                                                                                                                                                                         ctcAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatctacccgcaattttatcagactctgtt                                      >  1:63241‑M2/1‑165 (MQ=255)
                                                                                                                                                                                                                                           cAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatctacccgcaattttatcagactctgttttcttcaaaaattgctcatttttgagttctttaaac  >  1:552014‑M2/1‑163 (MQ=255)
                                                                                                                                                                                                                                           cAAGCCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTaatttctcccatatagtaagctaatctacccgcaattttatcagactctgttttcttcaaaaattgctcatttttgagttctttaaa   <  1:538899‑M2/250‑88 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                      
CTTCTACAGTTATGCCTTTTTGGTTGTATATCCTTATGCGTTGCCAGTCCCTCAAGAGCTTTTGAAAGCTGGCTATCTTTCTTTAGCAGATCATCTGCTCTTACTCCATTTACTAAAACATCATAAGACTTTTGTCCTAATTTTTCAGATTTTTCTTTATTGAAAGAAAAATCTATTTTGTACTCTTTTTCTAAATTTAGAGATAGAGGAGTTAGCCCTTTTTCGATAATATTCTCAAGTCCTTTATAATCACATCTATGAACTTGAATTGAAGCACTTGTCATTTCTTCTTGAGTTGTTTTATCAAAACTTAATTCGTAGCCAGCCTCTTTTGCTAATTGAGCTATAAAGATTCGTTGTGTTCTTCCGTTCCCCTCTCTAAAAGGGTGTATAGCGTTAAGTGCATCGTCCTCTCGAATATAATTAAGTAGCTCATTGAGCTGCTCTTCGTTTTTTTTCGGCTTTGCCTGAAAAAAGTTTTATATG  >  1/644373‑644858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑