| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 2,031,899 | A→T | E285V (GAA→GTA) | unknown → | Oligopeptide ABC transporter, substrate‑binding protein OppA (TC 3.A.1.5.1) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 2,031,899 | 0 | A | T | 100.0% | 255.0 / NA | 89 | E285V (GAA→GTA) | unknown | Oligopeptide ABC transporter, substrate‑binding protein OppA (TC 3.A.1.5.1) |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (37/52); total (37/52) | |||||||||||
AAGACAATATCGTCGGTAACGGTGCCTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGAATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCAAACACCAACCTATGTGTTTACCCCGCCGTACATTAATGAAGGCGAGCTGATTCAACAACCGGCTTACAGCAAAGAACCGATGGCTCAACGCAATGAGGA > 1/2031653‑2032139 | aaGACAATATCGTCGGTAACGGTGCCTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTAttt < 1:378232/251‑1 (MQ=255) gACAATATCGTCGGTAACGGTGCCTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTa > 1:705278/1‑250 (MQ=255) aCAATATCGTCGGTAACGGTGCCTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTAc < 1:604027/250‑1 (MQ=255) aCAATATCGTCGGTAACGGTGCCTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTAc < 1:8674/250‑1 (MQ=255) cAATATCGTCGGTAACGGTGCCTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTg < 1:761322/251‑1 (MQ=255) atatCGTCGGTAACGGTGCCTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGc > 1:157621/1‑250 (MQ=255) gtcgGTAACGGTGCCTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGaa > 1:176191/1‑250 (MQ=255) cgGTAACGGTGCCTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAAccc < 1:284149/251‑1 (MQ=255) cgGTAACGGTGCCTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAAccc < 1:687478/251‑1 (MQ=255) cgGTAACGGTGCCTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAAcc > 1:349421/1‑250 (MQ=255) gTAACGGTGCCTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTg > 1:671331/1‑240 (MQ=255) tAACGGTGCCTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCttt < 1:166898/251‑1 (MQ=255) ggTGCCTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAACCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCaa > 1:446366/1‑250 (MQ=255) gTGCCTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAAc < 1:85371/250‑1 (MQ=255) tGCCTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAAcc < 1:144592/250‑1 (MQ=255) tGCCTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAAcc < 1:554866/250‑1 (MQ=255) ccTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTAt > 1:50173/1‑251 (MQ=255) cTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTAtt > 1:599286/1‑251 (MQ=255) aTTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATg < 1:394666/251‑1 (MQ=255) ttAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAAccc > 1:849827/1‑232 (MQ=255) cACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAatcaatca < 1:798686/251‑1 (MQ=255) aaCGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGc < 1:250865/251‑1 (MQ=255) aCGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCa > 1:545897/1‑251 (MQ=255) aaaaaaTTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCg < 1:330691/251‑1 (MQ=255) aaaTTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGttt > 1:169999/1‑251 (MQ=255) aaaTTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGttt < 1:681862/251‑1 (MQ=255) ttGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAAc < 1:115191/251‑1 (MQ=255) aCCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTgaga > 1:828065/1‑251 (MQ=255) aCCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTgaga < 1:897245/251‑1 (MQ=255) atatTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAAcc > 1:836396/1‑190 (MQ=255) atatTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATg > 1:482135/1‑200 (MQ=255) atatTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCAt > 1:174254/1‑251 (MQ=255) atatTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCAt > 1:893356/1‑251 (MQ=255) aaGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTAttt > 1:574292/1‑155 (MQ=255) aaaCGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGAt < 1:755820/251‑1 (MQ=255) aaaCGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGAt < 1:375062/251‑1 (MQ=255) aaaCGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGAt < 1:227640/251‑1 (MQ=255) aaaTTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAAt < 1:496596/251‑1 (MQ=255) aaTTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAAtg > 1:571831/1‑251 (MQ=255) ccTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATAc < 1:344029/175‑1 (MQ=255) ccTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGt < 1:102578/233‑1 (MQ=255) cttcttAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGa < 1:61130/192‑1 (MQ=255) cttcttAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAg < 1:766462/251‑1 (MQ=255) ttcttAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTAc < 1:328650/131‑1 (MQ=255) ttcttAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACt > 1:540165/1‑132 (MQ=255) ttcttAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGAt > 1:799909/1‑228 (MQ=255) ttcttAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGa < 1:104225/238‑1 (MQ=255) ttcttAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGt > 1:697453/1‑251 (MQ=255) ttcttAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGt > 1:351621/1‑251 (MQ=255) ttcttAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGt > 1:631367/1‑251 (MQ=255) gCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATg < 1:556991/154‑1 (MQ=255) gCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATAc < 1:286705/167‑1 (MQ=255) ccATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGa < 1:359935/251‑1 (MQ=255) aTTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATg < 1:742098/151‑1 (MQ=255) aaTTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGt < 1:190030/249‑1 (MQ=255) ttCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCaaa > 1:636955/1‑251 (MQ=255) ttCCAGCACCGACGTGGCACATTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGAt > 1:161888/1‑211 (MQ=255) aGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGa < 1:659225/170‑1 (MQ=255) cACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAAccc < 1:853522/119‑1 (MQ=255) cACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCAAacac < 1:886210/248‑1 (MQ=255) cACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCAAacac < 1:458848/248‑1 (MQ=255) aCGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAg < 1:624301/222‑1 (MQ=255) cGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAAt > 1:166549/1‑187 (MQ=255) tGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCAAACACCAACCTAtgtg < 1:816460/251‑1 (MQ=255) gCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCAAACACCAACCTATgtgt < 1:79455/250‑1 (MQ=255) aCGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGAt < 1:606963/193‑1 (MQ=255) cGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCTTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCAAACACCAACCTATGTGTTTa > 1:3733/1‑250 (MQ=255) cGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTAcc > 1:319230/1‑207 (MQ=255) ttATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAGCCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCAAACACCAACCTATGTGTTTAcc < 1:843137/250‑1 (MQ=255) ttATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCAAACACCAACCTATGTGTTTAc < 1:123947/249‑1 (MQ=255) ttATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCGTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGc < 1:287203/171‑1 (MQ=255) gTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAAc > 1:643284/1‑146 (MQ=255) gTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCAAACACCAACCTATGTGTTTACCccgccg > 1:690785/1‑251 (MQ=255) tCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGc > 1:821979/1‑160 (MQ=255) tCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCAAACACCAACCTATGTGTTTACCCCGCCGTACATTAATGAAGGCGAg > 1:457363/1‑251 (MQ=255) aGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCAAACACCAACCTATGTGTTTACCCCGCCGTACATTAATGAAGGCGAGCTGAt > 1:743438/1‑251 (MQ=255) gCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAAt < 1:238370/149‑1 (MQ=255) cGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAAcc < 1:441072/79‑1 (MQ=255) cccTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAGCCCTTTCAACCTATTta < 1:521670/83‑1 (MQ=255) cccTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAAtg < 1:320364/162‑1 (MQ=255) cccTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCAAacac > 1:13534/1‑198 (MQ=255) cgccgGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCAAACACCAACCTATGTGTTTACCCCGCCGTACATTAATGAAGGCGAGCTGATTCAACAACCgg > 1:407270/1‑249 (MQ=255) gAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATg < 1:229866/76‑1 (MQ=255) ttCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCAAACACCAACCTATGTGTTTACCCCGCCGTACATTAATGAAGGCGAGCTGATTCAACAACCGGCTTACAGCAAAGa < 1:221107/251‑1 (MQ=255) tCGCCAAACTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAaatcaatc > 1:180325/1‑78 (MQ=255) cTGAAAAAAGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGcc > 1:840092/1‑123 (MQ=255) aaaaaaGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCAAACACCAACCTATGTGTTTACCCCGCCGTACATTAATGAAGGCGAGCTGATTCAACAACCGGCTTACAGCAAAGAACCGATGGCTc < 1:679975/250‑1 (MQ=255) aaGATGTTCCGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCAAACCCCAACCTATGTGTTTACCCCGCCGTACATTAATGAAGGCGAGCTGATTCAACAACCGGCTTACAGCAAAGAACCGATGGCTCAACGc < 1:591212/251‑1 (MQ=255) ccGGATGAAGTATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCAAACACCAACCTATGTGTTTACCCCGCCGTACATTAATGAAGGCGAGCTGATTCAACAACCGGCTTACAGCAAAGAACCGATGGCTCAACGCAATGAGGa < 1:535376/251‑1 (MQ=255) | AAGACAATATCGTCGGTAACGGTGCCTATAAATTAAAAAATCACGTCATCAACGAAAAAATTGAATTTGAGCGCAACCCGCAATATTGGAATGACAAAGAAACGCAAATTAACAACGCCACCTTCTTAGCCATTGAGAATTCCAGCACCGACGTGGCACGTTATCGTGCAGGAGATTTGGACATCACCAGCCACGCCCTTCCGCCGGAGCAATTCGCCAAACTGAAAAAAGATGTTCCGGATGAAGAATTTACTGCCAGAACCCTTTCAACCTATTTATATGAAATCAATCATACGAAGGCACCGTTTAACGACATTCGCGTGAGAAAAGCATTAAATTTAGCCTTAGATCGTAATGTGATTACCGATAAAGTGCTGGGACAAGGTCAAACACCAACCTATGTGTTTACCCCGCCGTACATTAATGAAGGCGAGCTGATTCAACAACCGGCTTACAGCAAAGAACCGATGGCTCAACGCAATGAGGA > 1/2031653‑2032139 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |