Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 2,003,266 C→T T86T (ACG→ACA)  unknown ← Holliday junction ATP‑dependent DNA helicase RuvB (EC 3.6.4.12)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*12,003,2660CT100.0% 159.3 / NA 56T86T (ACG→ACA) unknownHolliday junction ATP‑dependent DNA helicase RuvB (EC 3.6.4.12)
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (26/30);  total (26/30)

GGTTAAAGAGCCCGCACGGGTGGTTGCACCGATAAGCGTAAAAGGAGGTAAATCCAATTTAATAGAACGCGCTGCCGGCCCTTCGCCAATCATAATATCAAGCTGATAATCTTCCATTGCCGGATAAAGCACTTCTTCAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGACGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCACGATCGATAACATCCTCGTCTAATTTTGCCGTCGCACTGATAATTCTGTC  >  1/2003020‑2003511
                                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                     
ggTTAAAGAGCCCGCACGGGTGGTTGCACCGATAAGCGTAAAAGGAGGTAAATCCAATTTAATAGAACGCGCTGCCGGCCCTTCGCCAATCATAATATCAAGCTGATAATCTTCCATTGCCGGATAAAGCACTTCTTCAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAg                                                                                                                                                                                                                                                   >  1:796343/1‑251 (MQ=255)
          cccGCACGGGTGGTTGCACCGATAAGCGTAAAAGGAGGTAAATCCAATTTAATAGAACGCGCTGCCGGCCCTTCGCCAATCATAATATCAAGCTGATAATCTTCCATTGCCGGATAAAGCACTTCTTCAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAatat                                                                                                                                                                                                                                          <  1:459457/250‑1 (MQ=255)
                cGGGTGGTTGCACCGATAAGCGTAAAAGGAGGTAAATCCAATTTAATAGAACGCGCTGCCGGCCCTTCGCCAATCATAATATCAAGCTGATAATCTTCCATTGCCGGATAAAGCACTTCTTCAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGcc                                                                                                                                                                                                                                   <  1:227380/251‑1 (MQ=255)
                    tggtTGCACCGATAAGCGTAAAAGGAGGTAAATCCAATTTAATAGAACGCGCTGCCGGCCCTTCGCCAATCATAATATCAAGCTGATAATCTTCCATTGCCGGATAAAGCACTTCTTCAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAatat                                                                                                                                                                                                                                          <  1:525434/240‑1 (MQ=255)
                                                             aTAGAACGCGCTGCCGGCCCTTCGCCAATCATAATATCAAGCTGATAATCTTCCATTGCCGGATAAAGCACTTCTTCAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAAcc                                                                                                                                                                                      <  1:504192/251‑1 (MQ=255)
                                                                  aCGCGCTGCCGGCCCTTCGCCAATCATAATATCAAGCTGATAATCTTCCATTGCCGGATAAAGCACTTCTTCAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCcggcg                                                                                                                                                                                 <  1:315754/251‑1 (MQ=255)
                                                                          ccGGCCCTTCGCCAATCATAATATCAAGCTGATAATCTTCCATTGCCGGATAAAGCACTTCTTCAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAAT‑CCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCaaaaa                                                                                                                                                                        <  1:387663/251‑1 (MQ=255)
                                                                             gCCCTTCGCCAATCATAATATCAAGCTGATAATCTTCCATTGCCGGATAAAGCACTTCTTCAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTg                                                                                                                                                                                                                                                 >  1:526864/1‑176 (MQ=255)
                                                                             gCCCTTCGCCAATCATAATATCAAGCTGATAATCTTCCATTGCCGGATAAAGCACTTCTTCAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAatat                                                                                                                                                                                                               <  1:578368/210‑1 (MQ=255)
                                                                                         tCATAATATCAAGCTGATAATCTTCCATTGCCGGATAAAGCACTTCTTCAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGacc                                                                                                                                                           >  1:879409/1‑248 (MQ=255)
                                                                                         tCATAATATCAAGCTGATAATCTTCCATTGCCGGATAAAGCACTTCTTCAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATc                                                                                                                                                           >  1:271823/1‑250 (MQ=255)
                                                                                                    aGCTGATAATCTTCCATTGCCGGATAAAGCACTTCTTCAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATc                                                                                                                                                  >  1:849982/1‑248 (MQ=255)
                                                                                                      cTGATAATCTTCCATTGCCGGATAAAGCACTTCTTCAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGa                                                                                                                                              >  1:605956/1‑250 (MQ=255)
                                                                                                                    ttGCCGGATAAAGCACTTCTTCAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCaaaaa                                                                                                                                                                        <  1:187653/210‑1 (MQ=255)
                                                                                                                           aTAAAGCACTTCTTCAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTtgatga                                                                                                                        >  1:484739/1‑251 (MQ=255)
                                                                                                                           aTAAAGCACTTCTTCAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTtgatga                                                                                                                        >  1:23535/1‑251 (MQ=255)
                                                                                                                                     tcttcAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCAt                                                                                                              >  1:71625/1‑251 (MQ=255)
                                                                                                                                       ttcAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCAttt                                                                                                            <  1:464580/251‑1 (MQ=255)
                                                                                                                                                  gagaAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTg                                                                                                           >  1:226605/1‑241 (MQ=255)
                                                                                                                                                   agaAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATAcc                                                                                                 <  1:89625/250‑1 (MQ=255)
                                                                                                                                                     aaaGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCt                                                                                                <  1:647771/249‑1 (MQ=255)
                                                                                                                                                     aaaGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCt                                                                                                <  1:177156/249‑1 (MQ=255)
                                                                                                                                                          cGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATc                                                                                                                                                                      >  1:742559/1‑174 (MQ=255)
                                                                                                                                                                  ttCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACAt                                                                                 <  1:71424/251‑1 (MQ=255)
                                                                                                                                                                      tcaATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAAt                                                                              >  1:565520/1‑250 (MQ=255)
                                                                                                                                                                           aaaCAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGcc                                                                                                                                                                                                          >  1:336644/1‑121 (MQ=255)
                                                                                                                                                                            aacaacACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCgg                                                                                            >  1:62198/1‑230 (MQ=255)
                                                                                                                                                                              caacaCATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATg                                                                                                                                                              <  1:351507/162‑1 (MQ=255)
                                                                                                                                                                               aacaCATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCaa                                                                    >  1:186312/1‑251 (MQ=255)
                                                                                                                                                                                   catcatGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAAttt                                                                 >  1:246915/1‑250 (MQ=255)
                                                                                                                                                                                            gCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACAt                                                                                 <  1:468860/225‑1 (MQ=255)
                                                                                                                                                                                            gCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATg                                                       >  1:897661/1‑251 (MQ=255)
                                                                                                                                                                                               ccAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCa                                                    >  1:62042/1‑251 (MQ=255)
                                                                                                                                                                                                 aGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATcc                                                                                                                                                 <  1:641189/156‑1 (MQ=255)
                                                                                                                                                                                                 aGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCAcg                                                  >  1:719505/1‑251 (MQ=255)
                                                                                                                                                                                                   aTTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCAcgat                                                <  1:291124/251‑1 (MQ=255)
                                                                                                                                                                                                   aTTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCAc                                                   <  1:188254/248‑1 (MQ=255)
                                                                                                                                                                                                    ttGGTCAACATTGCCGCCAAATCCCCCGC‑TTTTCCAGCACGGGGCCTGATGTAGTg                                                                                                                                                                                                                                                 >  1:276092/1‑56 (MQ=255)
                                                                                                                                                                                                      ggTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCAcgatcga                                             >  1:507785/1‑251 (MQ=255)
                                                                                                                                                                                                          aaCATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCACGATCGATAAc                                         <  1:871601/251‑1 (MQ=255)
                                                                                                                                                                                                          aaCATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCACGATCGATAAc                                         <  1:91312/251‑1 (MQ=255)
                                                                                                                                                                                                                        aTCCCCCGCTTTTTCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCACGATCGATAACATCCTCGTCTAAtt                           <  1:165271/251‑1 (MQ=255)
                                                                                                                                                                                                                                    ttCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATa                                                                                <  1:51371/186‑1 (MQ=255)
                                                                                                                                                                                                                                    ttCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAg                                                                       >  1:413520/1‑195 (MQ=255)
                                                                                                                                                                                                                                    ttCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCACGATCGATAACATCCTCGTCTAATTTTGCCGTCGCa                >  1:831917/1‑250 (MQ=255)
                                                                                                                                                                                                                                    ttCCAGCACGGGGCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCACGATCGATAACATCCTCGTCTAATTTTGCCGTCGCa                >  1:198736/1‑250 (MQ=255)
                                                                                                                                                                                                                                              gggCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATGCCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCACGATCGATAACATCCTCGTCTAATTTTGCCGTCGCACTGATAATtc      <  1:203327/250‑1 (MQ=255)
                                                                                                                                                                                                                                              gggCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCACGATCGATAACATCCTCGTCTAATTTTGCCGTCGCACTGATAATtc      <  1:265310/250‑1 (MQ=255)
                                                                                                                                                                                                                                              gggCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCACGATCGATAACATCCTCGTCTAATTTTGCCGTCGCACTGATAATtc      <  1:149166/250‑1 (MQ=255)
                                                                                                                                                                                                                                                gCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCACGATCGATAACATCCTCGTCTAATTTTGCCGTCGCACTGATAAtt       <  1:738225/247‑1 (MQ=255)
                                                                                                                                                                                                                                                gCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCACGATCGATAACATCCTCGTCTAATTTTGCCGTCGCACTGATAAtt       >  1:133870/1‑247 (MQ=255)
                                                                                                                                                                                                                                                gCCTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCACGATCGATAACATCCTCGTCTAATTTTGCCGTCGCACTGATAATtc      >  1:15556/1‑248 (MQ=255)
                                                                                                                                                                                                                                                cccTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGcc                                                                                                                                                                                                          <  1:292084/51‑1 (MQ=255)
                                                                                                                                                                                                                                                 ccTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCACGATCGATAACATCCTCGTCTAATTTTGCCGTCGCACTGATAATtctgtc  <  1:274320/251‑1 (MQ=255)
                                                                                                                                                                                                                                                  cTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATc                                                                             <  1:897656/175‑1 (MQ=255)
                                                                                                                                                                                                                                                  cTGATGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCACGATCGATAACATCCTCGTCTAATTTTGCCGTCGCACTGATAATtc      <  1:190957/246‑1 (MQ=255)
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GGTTAAAGAGCCCGCACGGGTGGTTGCACCGATAAGCGTAAAAGGAGGTAAATCCAATTTAATAGAACGCGCTGCCGGCCCTTCGCCAATCATAATATCAAGCTGATAATCTTCCATTGCCGGATAAAGCACTTCTTCAATCGCCGGAGAAAGACGATGAATTTCATCAATAAACAACACATCATGAGGCTCCAGATTGGTCAACATTGCCGCCAAATCCCCCGCTTTTTCCAGCACGGGGCCTGACGTAGTGCGAATATTTACGCCCATTTCATTGGCAACAATATTTGCCAAGGTGGTTTTTCCCAAACCCGGCGGGCCAAAAATCAGCAAATGATCCAACGCATCCTGACGCAATTTTGCCGCCTTGATGAAAATCTCCATTTGCTCGCATACCTGCGGTTGCCCCACATAATCCGCCAGCAATTTCGGGCGAATGGCACGATCGATAACATCCTCGTCTAATTTTGCCGTCGCACTGATAATTCTGTC  >  1/2003020‑2003511

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑