| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,986,829 | T→C | P161S (CCA→TCG) | unknown ← | 16S rRNA (guanine(1207)‑N(2))‑methyltransferase (EC 2.1.1.172) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,986,829 | 0 | T | C | 98.6% | 202.7 / ‑4.6 | 72 | P161S (CCA→TCG) | unknown | 16S rRNA (guanine(1207)‑N(2))‑methyltransferase (EC 2.1.1.172) |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (47/24); total (47/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
GATTTTCCTGTAAAGTGCGCTTTGCGGAAGCCAACGCCAAGGCATGAATATCTGTCATGATTAATCGGGTGTTCGGGTTGTGCCGTTGAATATAACTGCCGATCACTCCCGCGCCGCAGCCCACGTCCAACACCCCGCCTGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGTTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAATTTGTGGCGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAACTGAAAATGATACAGACTGCAACGGCGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACGCCGCTACGATTTTCGCCCACCAGCAAAACCTCCTGCCCGGCGGTGCATTGTGAGAGAAGCTGCATGAGCTGGAAATGGCATTCCTGTTTATTC > 1/1986588‑1987066 | gATTTTCCTGTAAAGTGCGCTTTGCGGAAGCCAACGCCAAGGCGTGAATATCCGTCATGATTAATCGGGTGTTCGGGTTGTGCTGTTGAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGa > 1:392892/1‑251 (MQ=255) aTTTTCCTGTAAAGTGCGCTTTGCGGAAGCCAACGCCAAGGCGTGAATATCCGTCATGATTAATCGGGTGTTCGGGTTGTGCTGTTGAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGAt < 1:646635/251‑1 (MQ=255) tCCTGTAAAGTGCGCTTTGCGGAAGCCAACGCCAAGGCGTGAATATCCGTCATGATTAATCGGGTGTTCGGGTTGTGCTGTTGAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGa < 1:555053/251‑1 (MQ=255) ccTGTAAAGTGCGCTTTGCGGAAGCCAACGCCAAGGCGTGAATATCCGTCATGATTAATCGGGTGTTCGGGTTGTGCTGTTGAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGAt > 1:544524/1‑251 (MQ=255) aaaGTGCGCTTTGCGGAAGCCAACGCCAAGGCGTGAATATCCGTCATGATTAATCGGGTGTTCGGGTTGTGCTGTTGAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCa > 1:252635/1‑251 (MQ=255) ttGCGGAAGCCAACGCCAAGGCGTGAATATCCGTCATGATTAATCGGGTGTTCGGGTTGTGCTGTTGAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGtttt > 1:857387/1‑250 (MQ=255) gtGAATATCCGTCATGATTAATCGGGTGTTCGGGTTGTGCTGTTGAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGAtttt > 1:174457/2‑251 (MQ=255) aaTATCCGTCATGATTAATCGGGTGTTCGGGTTGTGCTGTTGAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTa > 1:152147/1‑251 (MQ=255) cATGATTAATCGGGTGTTCGGGTTGTGCTGTTGAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAAt < 1:618059/251‑1 (MQ=255) aaTCGGGTGTTCGGGTTGTGCTGTTGAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAg < 1:730085/251‑1 (MQ=255) gtTCGGGTTGTGCTGTTGAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCaa > 1:732606/1‑250 (MQ=255) gtTCGGGTTGTGCTGTTGAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCaa > 1:850159/1‑250 (MQ=255) ttCGGGTTGTGCTGTTGAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAAc < 1:257430/250‑1 (MQ=255) tCGGGTTGTGCTGTTGAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAAcga < 1:792504/251‑2 (MQ=255) ggTTGTGCTGTTGAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGTTGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATAc > 1:304567/1‑236 (MQ=255) gTTGAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAAcgacg > 1:129192/1‑238 (MQ=255) gTTGAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCg > 1:151337/1‑251 (MQ=255) gTTGAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGAGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCg > 1:510831/1‑251 (MQ=255) gAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGAtt > 1:180815/1‑251 (MQ=255) gAATATAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGAtt > 1:658031/1‑251 (MQ=255) atatAACTGCCAATCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCGGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGAtttt > 1:615956/1‑251 (MQ=255) gccaaTCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAatat > 1:791005/5‑251 (MQ=255) ccGATCACTCCCGCGCCGCAGCCCACGTCCAGCACCTCGCCTGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGTTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAATTTGTGGCGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAACTGAAAATGATACAGACTGCAACGGCGGGCGGAGTCGATTTTGTGAatat < 1:11417/250‑1 (MQ=255) aaTCACCCCTGCGCCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCg > 1:393609/2‑250 (MQ=255) cacccctgcgcCGCAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGt > 1:839009/8‑251 (MQ=255) gcAGCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCa > 1:374079/1‑251 (MQ=255) gCCCACGTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAatat > 1:381684/1‑230 (MQ=255) gTCCAACGCCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCAtttttt < 1:751717/248‑1 (MQ=255) gTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGa < 1:726661/220‑1 (MQ=255) gTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAata < 1:716407/223‑1 (MQ=255) gTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTcgg > 1:406534/1‑251 (MQ=255) gTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTcgg > 1:874023/1‑251 (MQ=255) gTCCAACACCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTcgg > 1:364997/1‑251 (MQ=255) cacCTCGCCCGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGTCGGaa > 1:276473/1‑250 (MQ=255) ccgcccgcGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAacgcac < 1:782685/251‑1 (MQ=255) cccgCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAacgcacacc < 1:685270/248‑4 (MQ=255) cccgCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAacgcacacc < 1:235148/248‑4 (MQ=255) cccgCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAacgcacac < 1:831075/247‑3 (MQ=255) gTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAAcga > 1:68569/1‑177 (MQ=255) gTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTaa > 1:109320/1‑211 (MQ=255) gTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGa > 1:645805/1‑250 (MQ=255) ttttttAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGAtt < 1:7695/251‑1 (MQ=255) tttttAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCAtttttt < 1:391161/225‑1 (MQ=255) gAAAGCAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAAcga > 1:744681/1‑164 (MQ=255) cAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGTTAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTaaaa > 1:327340/1‑251 (MQ=255) cAATAATGCCGTGCCGCCATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTaaaa > 1:267767/1‑251 (MQ=255) ccgccATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCcgg > 1:726689/1‑250 (MQ=255) gccATCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGAc < 1:827607/137‑1 (MQ=255) aTCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGAc < 1:429329/134‑1 (MQ=255) aTCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGa > 1:366719/1‑214 (MQ=255) aTCCAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCCCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCCGGCGGta > 1:768600/1‑249 (MQ=255) ccAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCCGGCGGTACAt < 1:385221/251‑1 (MQ=255) ccAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCCGGCGGTACAt < 1:899841/251‑1 (MQ=255) ccAGCTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCCGGCGGTACAt < 1:452063/251‑1 (MQ=255) cTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCCGGCGGTACATTGTGAGAGAAg > 1:150425/1‑248 (MQ=255) gAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAAcga > 1:632610/1‑123 (MQ=255) gAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCCGGCGGTACAt < 1:599727/235‑1 (MQ=255) gAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCCGGCGGTACATTGTGAGAGAAGCTGCa > 1:110471/1‑251 (MQ=255) gAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCCGGCGGTACATTGTGAGAGAAGCTGCa > 1:699636/1‑251 (MQ=255) gAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCCGGCGGTACATTGTGAGAGAAGCTGCa > 1:194344/1‑251 (MQ=255) gCAACGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCCGGCGGTACATTGTgag < 1:275620/230‑1 (MQ=255) aCGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCCGGCGGTACATTGTGAGAGAAGCTGCATGAGCTGGAAATgg > 1:99561/1‑251 (MQ=255) cGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGAc < 1:765871/101‑1 (MQ=255) cGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGa > 1:352346/1‑181 (MQ=255) cGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCCGGCGGTACATTGTGAGAGAAGCTGCATGAGCTGGAAATgg > 1:749738/1‑250 (MQ=255) cGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCCGGCGGTACATTGTGAGAGAAGCTGCATGAGCTGGAAATgg > 1:845888/1‑250 (MQ=255) cGCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCCGGCGGTACATTGTGAGAGAAGCTGCATGAGCTGGAAATgg > 1:212149/1‑250 (MQ=255) gCATAGATAGTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCCGGCGGTACATTGTGAGAGAAGCTGCATGAGCTGGAAATGGCa > 1:169108/1‑251 (MQ=255) atagTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAacgcgcaccactacg > 1:217985/1‑162 (MQ=255) tagTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCCGGCGGTACATTGTGAGAGAAGCTGCATGAGCTGGAAATGGCATTc > 1:783633/1‑247 (MQ=255) tagTTAAATCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCCGGCGGTACATTGTGAGAGAAGCTGCATGAGCTGGAAATGGCATTc > 1:529807/1‑247 (MQ=255) aaTCGGCAAGTTGCGACGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAATTGAAAATGATACAGACTGCAACGACGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACACCACTACGATTTTCGCCCACCAGTAAAACTTCCTGTCCGGCGGTACATTGTGAGAGAAGCTGCATGAGCTGGAAATGGCATTCCTGTTTAttc < 1:244789/251‑1 (MQ=255) | GATTTTCCTGTAAAGTGCGCTTTGCGGAAGCCAACGCCAAGGCATGAATATCTGTCATGATTAATCGGGTGTTCGGGTTGTGCCGTTGAATATAACTGCCGATCACTCCCGCGCCGCAGCCCACGTCCAACACCCCGCCTGCGATGTTTTTTAGCGTAGAAAGCAATAATGCCGTGCCGCCATCCAGTTCGGCGGCGCTGAATACGCCGGGCAACGCATAGATAGTTAAATCGGCAATTTGTGGCGATTGATAGGATTTCCAGAAAGTTTTCAGTTCAAAGTGCGGTGGATTTTTTAACTGAAAATGATACAGACTGCAACGGCGGGCGGAGTCGATTTTGTGAATATCGCCGTAATCGGCAAGCATTTTTTCGGCGGAACGCACGCCGCTACGATTTTCGCCCACCAGCAAAACCTCCTGCCCGGCGGTGCATTGTGAGAGAAGCTGCATGAGCTGGAAATGGCATTCCTGTTTATTC > 1/1986588‑1987066 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |