Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,985,375	T→C	Q106Q (CAA→CAG)	unknown ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,985,375	0	T	C	100.0%	184.0 / NA	62	Q106Q (CAA→CAG)	unknown	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (33/29);  total (33/29)

CGGCAGTATTTGTCGGTGTTATTGGCGAACGCAAGCTGTGGTGTAGCTTTTTTGTGCTGTTTTTTGCGTTAAAGTCATCATATCTCTGCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGTTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTACGGTTGTTAAATTGTGTTCAGGGTAAATACTGGTACATTGCCATTCCCCGCTCACTTTGCGTTGGGTAATTTTACCA  >  1/1985132‑1985618                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                    cGGCAGTATTTGTCGGTGTTATTGGCGAAAGCAAGCTGTGGTGTAGCTTTTTTGTGCTGTTTTTTGCGTTAAAGTCATCATATCTCTGCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTAc                                                                                                                                                                                                                                                >  1:766639/1‑249 (MQ=255)       tATTTGTCGGTGTTATTGGCGAAAGCAAGCTGTGGTGTAGCTTTTTTGTGCTGTTTTTTGCGTTAAAGTCATCATATCTCTGCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAg                                                                                                                                                                                                                                        <  1:431095/251‑1 (MQ=255)                 tgtTATTGGCGAAAGCAAGCTGTGGTGTAGCTTTTTTGTGCTGTTTTTTGCGTTAAAGTCATCATATCTCTGCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACg                                                                                                                                                                                                                               <  1:209331/250‑1 (MQ=255)                        ggCGAACGCAAGCTGTGGTGTAGCTTTTTTGTGCTGTTTTTTGCGTTAAAGTCATCATATCTCTGCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAAt                                                                                                                                                                                                                                           >  1:709009/1‑231 (MQ=255)                             aagCAAGCTGTGGTGTAGCTTTTTTGTGCTGTTTTTTGCGTTAAAGTCATCATATCTCTGCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAAttt                                                                                                                                                                                                                  <  1:277711/249‑1 (MQ=255)                                cAAGCTGTGGTGTAGCTTTTTTGTGCTGTTTTTTGCGTTAAAGTCATCATATCTCTGCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTtg                                                                                                                                                                                                                 <  1:279478/249‑1 (MQ=255)                                    cTGTGGTGTAGCTTTTTTGTGCTGTTTTTTGCGTTAAAGTCATCATATCTCTGCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTc                                                                                                                                                                                                                       <  1:30935/239‑1 (MQ=255)                                        ggtgTAGCTTTTTTGTGCTGTTTTTTGCGTTAAAGTCATCATATCTCTGCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGtt                                                                                                                                                                                                       >  1:55868/1‑251 (MQ=255)                                         gtgtAGCTTTTTTGTGCTGTTTTTTGCGTTAAAGTCATCATATCTCTGCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTAcc                                                                                                                                                                                                                                               >  1:437533/1‑210 (MQ=255)                                              gCTTTTTTGTGCTGTTTTTTGCGTTAAAGTCATCATATCTCTGCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTa                                                                                                                                                                                                 >  1:415793/1‑251 (MQ=255)                                               cTTTTTTGTGCTGTTTTTTGCGTTAAAGTCATCATATCTCTGCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTa                                                                                                                                                                                                 <  1:218353/250‑1 (MQ=255)                                                         cTGTTTTTTGCGTTAAAGTCATCATATCTCTGCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAA‑TAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTc                                                                                                                                                                                     <  1:337274/251‑1 (MQ=255)                                                          tGTTTTTTGCGTTAAAGTCATCATATCTCTGCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTc                                                                                                                                                                                     <  1:536520/251‑1 (MQ=255)                                                                              tcatATCTCTGCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTcc                                                                                                                                                                                                                      >  1:672154/1‑197 (MQ=255)                                                                              tcatATCTCTGCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTcc                                                                                                                                                                                    >  1:858352/1‑232 (MQ=255)                                                                              tcatATCTCTGCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATac                                                                                                                                                                 <  1:515740/251‑1 (MQ=255)                                                                                        gCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACtt                                                                                                                                                                                                  >  1:836439/1‑208 (MQ=255)                                                                                        gCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTa                                                                                                                                                                                                 >  1:341474/1‑209 (MQ=255)                                                                                          cAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGc                                                                                                                                                     <  1:480107/251‑1 (MQ=255)                                                                                          cAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGc                                                                                                                                                     <  1:451515/251‑1 (MQ=255)                                                                                             gCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTCAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTa                                                                                                                                                  >  1:428599/1‑251 (MQ=255)                                                                                             gCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTc                                                                                                                                                                                                                       <  1:416644/182‑1 (MQ=255)                                                                                               tCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGc                                                                                                                                                     <  1:312872/246‑1 (MQ=255)                                                                                                         gtgtCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAAt                                                                                                                                                                                                                                           <  1:549848/150‑1 (MQ=255)                                                                                                           gtCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAg                                                                                                                                                                                                <  1:811296/191‑1 (MQ=255)                                                                                                            tCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAAt                                                                                                                                                                                                                                           >  1:659802/1‑147 (MQ=255)                                                                                                                             aaaTTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAAt                                                                                                                                             >  1:416719/1‑224 (MQ=255)                                                                                                                              aaTTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTc                                                                                                                                                                                                                       >  1:173851/1‑149 (MQ=255)                                                                                                                              aaTTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCAc                                                                                                                  >  1:750210/1‑250 (MQ=255)                                                                                                                                           cGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTtg                                                                                                                                                                                                                 >  1:301272/1‑142 (MQ=255)                                                                                                                                                 aTTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAg                                                                                                                                                                                                         >  1:134482/1‑144 (MQ=255)                                                                                                                                                 aTTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTcccgtg                                                                                                                                                                                >  1:632888/1‑169 (MQ=255)                                                                                                                                                      cgcgCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCgg                                                                                                                          >  1:277137/1‑218 (MQ=255)                                                                                                                                                        cgcTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTa                                                                                                                       <  1:893820/219‑1 (MQ=255)                                                                                                                                                          cTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCaataa                                                                                                                                  >  1:277460/1‑206 (MQ=255)                                                                                                                                                              cTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATgg                                                                                                                                                      >  1:668493/1‑182 (MQ=255)                                                                                                                                                              cTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGtt                                                                                                                                        >  1:813877/1‑196 (MQ=255)                                                                                                                                                              cTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGattatt                                                                                 >  1:570793/1‑251 (MQ=255)                                                                                                                                                                gTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGtt                                                                                                                                        <  1:365796/194‑1 (MQ=255)                                                                                                                                                                gTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTa                                                                               >  1:589270/1‑251 (MQ=255)                                                                                                                                                                 tATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTa                                                                               <  1:286942/250‑1 (MQ=255)                                                                                                                                                                    ttCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCAc                                                                                                                  >  1:558851/1‑212 (MQ=255)                                                                                                                                                                                   tcttcATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTACGATTGTTAAATTGTGTTc                                                            <  1:222264/251‑1 (MQ=255)                                                                                                                                                                                              tttATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTACGATTGTTAAATTGTGTTCAGGGTAAATAc                                                 <  1:816886/251‑1 (MQ=255)                                                                                                                                                                                              tttATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTACGATTGTTAAATTGTGTTCAGGGTAAATAc                                                 <  1:682538/251‑1 (MQ=255)                                                                                                                                                                                               ttATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATgg                                                                                                                               <  1:330257/172‑1 (MQ=255)                                                                                                                                                                                                    tCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTACGATTGTTAAATTGTGTTCAGGGTAAATACTGGTAc                                           <  1:273462/251‑1 (MQ=255)                                                                                                                                                                                                     cTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTACGATTGTTAAATTGTGTTCAGGGTAAATACTGGTACa                                          >  1:84429/1‑251 (MQ=255)                                                                                                                                                                                                          aTCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTACGATTGTTAAATTGTGTTCAGGGTAAATACTGGTACATTGcc                                     <  1:169998/251‑1 (MQ=255)                                                                                                                                                                                                            ccTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTACGATTGTTAAATTGTGTTCAGGGTAAATACTGGTACATTGCCAt                                   >  1:403178/1‑251 (MQ=255)                                                                                                                                                                                                               ttttAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTACGATTGTTAAATTGTGTTCAGGGTAAATACTGGTACATTGCCATTc                                 >  1:767665/1‑250 (MQ=255)                                                                                                                                                                                                               ttttAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTACGATTGTTAAATTGTGTTCAGGGTAAATACTGGTACATTGCCATTc                                 >  1:503125/1‑250 (MQ=255)                                                                                                                                                                                                                          tCCAAAGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGtat                                                                                                                                                                                                                            <  1:812341/52‑1 (MQ=255)                                                                                                                                                                                                                             aaaGCCTCTTCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTACGATTGTTAAATTGTGTTCAGGGTAAATACTGGTACATTGCCATTCCCCGCTCACTTTGCg                  <  1:556074/251‑1 (MQ=255)                                                                                                                                                                                                                                      tCCGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTACGATTGTTAAATTGTGTTCAGGGTAAATACTGGTACATTGcc                                     <  1:119178/223‑1 (MQ=255)                                                                                                                                                                                                                                       ccGTATGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGGTCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTACGATTGTTAAATTGTGTTc                                                            <  1:148089/199‑1 (MQ=255)                                                                                                                                                                                                                                            tGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGTTCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTACGATTGTTAAATTGTGTTCAGGGTAAATACTGGTACATTGCCATTCCCCGCTCACTTTGCGTTGGGTAATTTTAc    >  1:398795/1‑250 (MQ=255)                                                                                                                                                                                                                                            tGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCa                                                                                                                                               <  1:701365/111‑1 (MQ=255)                                                                                                                                                                                                                                            tGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGt                                                                                                                         >  1:665612/1‑133 (MQ=255)                                                                                                                                                                                                                                            tGCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTACGATTGTTAAATTGTGTTCAGGGTAAATACTGGTACATTGCCATTCCCCGCTCACTTTGCGTTGGGTAATTTTAc    >  1:811353/1‑250 (MQ=255)                                                                                                                                                                                                                                             gCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATcc                                                                                                     >  1:215989/1‑152 (MQ=255)                                                                                                                                                                                                                                             gCCTACGCTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTACGATTGTTAAATTGTGTTCAGGGTAAATACTGGTACATTGCCATTCCCCGCTCACTTTGCGTTGGGTAATTTTACCa  >  1:13717/1‑251 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                    CGGCAGTATTTGTCGGTGTTATTGGCGAACGCAAGCTGTGGTGTAGCTTTTTTGTGCTGTTTTTTGCGTTAAAGTCATCATATCTCTGCCAAGCTCCATATCGCGTGTCAGTGAGCTAATCACAAAATTAATCGTGTTCGATTTATTCACGCGCTTACTGTATTTCTTAAACAAATTTTCTTCATAAAGTTTATATCTGGAATCCTTTTTAATGGCGTCCAAAGCCTCTTCCGTATGCCTACGTTGTACCCAATTAGTGGTAAACGTATAGGTCAATTTGTGATCAAGTTCACTTAGCTGCCATGTTCCCGTGCCCGTGATTTCATACACAAAAAATGGCTTATCAATAGGTTCAATAATGGTGCGGTTATTCACCAACGTGCCATCCCGATTTAAGCGCAGATTATTTACGGTTGTTAAATTGTGTTCAGGGTAAATACTGGTACATTGCCATTCCCCGCTCACTTTGCGTTGGGTAATTTTACCA  >  1/1985132‑1985618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑