| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,979,958 | G→A | S723S (AGC→AGT) | unknown ← | RTX toxins determinant A and related Ca2+‑binding proteins |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,979,958 | 0 | G | A | 100.0% | 125.4 / NA | 45 | S723S (AGC→AGT) | unknown | RTX toxins determinant A and related Ca2+‑binding proteins |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (19/26); total (19/26) | |||||||||||
GTCGTCGCCTTCTCCACCGTCAAGATAGTTGTTGCCATATTCACCAAAGAGCCTATCGTTACCGGCACCACCATAGAGCTTATCATTACCTTGGCCGCCATGAATTTCGTCATTCCCATTATCGCCATACAAACGATCATCGCCATCATAACCATAAATCAAATCATCGCCATCGTGACCATGGAAAACATCATTAAATTTAGAACCATAAAATTTATCACGTAGTGTGCTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAGTAATCTAATTTATAGTTACGATATTCAAGTAGATCGGTAACCTTCCCTCGTTTAGTTTCTTGCTTTGATACGGTTTCCTGCAAGACTTGAGTACCGCTAAGATCTCTTTCAACCTTATATTGTCCGGCTTTAGTAGCATTACGACCGTCGATT > 1/1979730‑1980177 | gtcgtcGCCTTCACCACCGTCTAGATAGTTGTTACCATATTCACCAAAGAGCCTGTCATTGCCGGCGCCACCATAAAGTTTGTCGTTGCCTTTTCCTCCATGGATCTCATCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTAc < 1:420430/249‑1 (MQ=255) tcgCCTTCACCACCGTCTAGATAGTTGTTACCATATTCACCAAAGAGCCTGTCATTGCCGGCGCCACCATAAAGTTTGTCGTTGCCTTTTCCTCCATGGATCTCATCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGt < 1:191139/250‑1 (MQ=255) gCCTTCACCACCGTCTAGATAGTTGTTACCATATTCACCAAAGAGCCTGTCATTGCCGGCGCCACCATAAAGTTTGTCGTTGCCTTTTCCTCCATGGATCTCATCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTa > 1:570569/1‑251 (MQ=255) ccTTCACCACCGTCTAGATAGTTGTTACCATATTCACCAAAGAGCCTGTCATTGCCGGCGCCACCATAAAGTTCGTCGTTGCCTTTTCCTCCATGGATCTCATCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTAc < 1:751858/242‑1 (MQ=255) tcaccACCGTCTAGATAGTTGTTACCATATTCACCAAAGAGCCTGTCATTGCCGGCGCCACCATAAAGTTTGTCGTTGCCTTTTCCTCCATGGATCTCATCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATtc < 1:588716/248‑1 (MQ=255) tcaccACCGTCTAGATAGTTGTTACCATATTCACCAAAGAGCCTGTCATTGCCGGCGCCACCATAAAGTTTGTCGTTGCCTTTTCCTCCATGGATCTCATCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATtc < 1:671199/248‑1 (MQ=255) ccGTCTAGATAGTTGTTACCATATTCACCAAAGAGCCTGTCATTGCCGGCGCCACCATAAAGTTTGTCGTTGCCTTTTCCTCCATGGATCTCATCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATg > 1:332492/1‑251 (MQ=255) gttgttACCATATTCACCAAAGAGCCTGTCATTGCCGGCGCCACCATAAAGTTTGTCGTTGCCTTTTCCTCCATGGATCTCATCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTg < 1:521832/224‑1 (MQ=255) tgttaCCATATTCACCAAAGAGCCTGTCATTGCCGGCGCCACCATAAAGTTTGTCGTTGCCTTTTCCTCCATGGATCTCATCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGccc < 1:392856/251‑1 (MQ=255) ccATATTCACCAAAGAGCCTGTCATTGCCGGCGCCACCATAAAGTTTGTCGTTGCCTTTTCCTCCATGGATCTCATCATTATCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTAtt < 1:429599/251‑1 (MQ=255) ccATATTCACCAAAGAGCCTGTCATTGCCGGCGCCACCATAAAGTTTGTCGTTGCCTTTTCCTCCATGGATCTCATCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTAtt < 1:159658/251‑1 (MQ=255) ccATATTCACCAAAGAGCCTGTCATTGCCGGCGCCACCATAAAGTTTGTCGTTGCCTTTTCCTCCATGGATCTCATCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTAtt < 1:185394/251‑1 (MQ=255) atTCACCAAAGAGCCTGTCATTGCCGGCGCCACCATAAAGTTTGTCGTTGCCTTTTCCTCCATGGATCTCATCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGc < 1:645074/232‑1 (MQ=255) cACCAAAGAGCCTGTCATTGCCGGCGCCACCATAAAGTTTGTCGTTGCCTTTTCCTCCATGGATCTCATCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTAtt < 1:470858/244‑1 (MQ=255) ccAAAGAGCCTGTCATTGCCGGCGCCACCATAAAGTTTGTCGTTGCCTTTTCCTCCATGGATCTCATCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTataata > 1:141191/1‑251 (MQ=255) cAAAGAGCCTGTCATTGCCGGCGCCACCATAAAGTTTGTCGTTGCCTTTTCCTCCATGGATCTCATCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAg < 1:557348/251‑1 (MQ=255) cAAAGAGCCTGTCATTGCCGGCGCCACCATAAAGTTTGTCGTTGCCTTTTCCTCCATGGATCTCATCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAg < 1:152925/251‑1 (MQ=255) cctccatggatctcatCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAGTAATCTAATTTATAGTTACGATATTCAAGTAGATCGGTAACCTTCCCTCg > 1:16182/16‑251 (MQ=255) gatctcatCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAg < 1:807841/186‑1 (MQ=255) gatctcatCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAGTAATCTAATTTATAg > 1:516618/8‑208 (MQ=255) atctcatCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAAt < 1:773700/150‑1 (MQ=255) catCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTc < 1:282369/177‑1 (MQ=255) catCATTACCATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAg > 1:161063/3‑188 (MQ=255) ttaccATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAg < 1:828412/180‑1 (MQ=255) ttaccATTATCTCCATATAAGCGGTCATCACCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAGTAATCTAATTTATAGTTACGATATTCAAGTAGATCGGTAACCTTCCCTCGTTTAGTTTCTTGCTTTGa > 1:694552/4‑251 (MQ=255) ccatataagcggtcatcaCCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTAtt > 1:878970/13‑161 (MQ=255) ccatataagcggtcatcaCCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTAtt > 1:108659/13‑161 (MQ=255) ccatataagcggtcatcaCCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAg > 1:723137/13‑171 (MQ=255) ccatataagcggtcatcaCCATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAGTAATCt > 1:217626/13‑177 (MQ=255) atcaccATCATAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAGTAATCTAATTTATAGTTACGATATTCAAGTAGATCGGTAACCTTCCCTCGTTTAGTTTCTTGCTTTGATACGGTTTCCTGCAAGACTTGAGTAc < 1:794137/247‑1 (MQ=255) catcatAACCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATtc > 1:232746/1‑118 (MQ=255) aCCATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATtc > 1:845953/1‑111 (MQ=255) ccATAAATCACATCATCACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAGTAATCTAATTTATAGTTACGATATTCAAGTAGATCGGTAACCTTCCCTCGTTTAGTTTCTTGCTTTGATACGGTTTCCTGCAAGACTTGAGTACCGCTAAGa > 1:507207/1‑246 (MQ=255) catcACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAGTAATCTAATTTATAGTTACGATATTCAAGTAGATCGGTAACCTTCCCTCGTTTAGTTTCTTGCTTTGATACGGTTTCCTGCAAGACTTGAGTACCGCTAAGATCTCTTTCAACCTTatat < 1:872250/251‑1 (MQ=255) catcACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAGTAATCTAATTTATAGTTACGATATTCAAGTAGATCGGTAACCTTCCCTCGTTTAGTTTCTTGCTTTGATACGGTTTCCTGCAAGACTTGAGTACCGCTAAGATCTCTTTCAACCTTatat < 1:606260/251‑1 (MQ=255) catcACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAGTAATCTAATTTATAGTTACGATATTCAAGTAGATCGGTAACCTTCCCTCGTTTAGTTTCTTGCTTTGATACGGTTTCCTGCAAGACTTGAGTACCGCTAAGATCTCTTTCAACCTTatat < 1:244104/251‑1 (MQ=255) catcACCATCGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAGTAATCTAATTTATAGTTACGATATTCAAGTAGATCGGTAACCTTCCCTCGTTTAGTTTCTTGCTTTGATACGGTTTCCTGCAAGACTTGAGTACCGCTAAGATCTCTTTCAACCTTatat < 1:729921/251‑1 (MQ=255) cGTGACCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAGTAATCTAATTTATAGTTACGATATTCAAGTAGATCGGTAACCTTCCCTCGTTTAGTTTCTTGCTTTGATACGGTTTCCTGCAAGACTTGAGTACCGCTAAGATCTCTTTCAACCTTATATTGTCCGGCt < 1:301135/251‑1 (MQ=255) aCCATGGAAAACATCATTAAATCTAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAGTAATCTAAtt < 1:23876/128‑1 (MQ=255) aatctAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAGTAATCTAATTTATAGTTACGATATTCAAGTAGATCGGTAACCTTCCCTCGTTTAGTTTCTTGCTTTGATACGGTTTCCTGCAAGACTTGAGTACCGCTAAGATCTCTTTCAACCTTATATTGTCCGGCTTTAGTAGCATTACGACCGTCGAt < 1:147621/247‑1 (MQ=255) atctAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAAt > 1:120811/4‑62 (MQ=255) atctAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAg > 1:23059/4‑80 (MQ=255) atctAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAGTAATCTAATTTATAGTTACGATATTCAAGTAGATCGGTAACCTTCCCTCGTTTAGTTTCTTGCTTTGATACGGTTTCCTGCAAGACTTGAGTAc > 1:673442/4‑192 (MQ=255) atctAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAGTAATCTAATTTATAGTTACGATATTCAAGTAGATCGGTAACCTTCCCTCGTTTAGTTTCTTGCTTTGATACGGTTTCCTGCAAGACTTGAGTACCGCTAAGATCTCTTTCAACCTTATATTGTCCGGCTTTAGTAGCATTACGACCGTCGAtt > 1:605816/4‑251 (MQ=255) atctAGAACCATAAAAATGATCCCGTAATTTACTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAGTAATCTAATTTATAGTTACGATATTCAAGTAGATCGGTAACCTTCCCTCGTTTAGTTTCTTGCTTTGATACGGTTTCCTGCAAGACTTGAGTACCGCTAAGATCTCTTTCAACCTTATATTGTCCGGCTTTAGTAGCATTACGACCGTCGAtt > 1:464941/4‑251 (MQ=255) | GTCGTCGCCTTCTCCACCGTCAAGATAGTTGTTGCCATATTCACCAAAGAGCCTATCGTTACCGGCACCACCATAGAGCTTATCATTACCTTGGCCGCCATGAATTTCGTCATTCCCATTATCGCCATACAAACGATCATCGCCATCATAACCATAAATCAAATCATCGCCATCGTGACCATGGAAAACATCATTAAATTTAGAACCATAAAATTTATCACGTAGTGTGCTGCCGATAATTTCCTCTACTGAGTTTAATTCATCATGAGCTTTAAAGCCCTTATTCGTATAATAGTAATCTAATTTATAGTTACGATATTCAAGTAGATCGGTAACCTTCCCTCGTTTAGTTTCTTGCTTTGATACGGTTTCCTGCAAGACTTGAGTACCGCTAAGATCTCTTTCAACCTTATATTGTCCGGCTTTAGTAGCATTACGACCGTCGATT > 1/1979730‑1980177 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |