Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 309,156 A→C V232G (GTT→GGT)  unknown ← Recombinase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1309,1560AC100.0% 204.4 / NA 70V232G (GTT→GGT) unknownRecombinase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (42/28);  total (42/28)

GTTTTATTGAGCGTTGGTGAATAATGGCTTGTGCTGCATTAAATAAGGGTTGTGGGATAATTGCTTCAAAAGCATTTTCAACTCTTACCCATTGAGACTCTGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATAACTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAACCCAAATCCAGCTGGTCCACCTTGACGAAATCCGCGCTCAAT  >  1/308920‑309397
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                 
gtTTTATTGAGCGTTGGTGAATAATGGCTTGTGCTGCATTAAATAAGGGTTGTGGGATAATTGCTTCAAAAGCATTTTCAACTCTTACCCATTGAGACTCTGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTaaa                                                                                                                                                                                                                                     >  1:446946/1‑251 (MQ=255)
           cGTTGGTGAATAATGGCTTGTGCTGCATTAAATAAGGGTTGTGGGATAATTGCTTCAAAAGCATTTTCAACTCTTACCCATTGAGACTCTGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAAt                                                                                                                                                                                                                          <  1:688636/251‑1 (MQ=255)
             ttGGTGAATAATGGCTTGTGCTGCATTAAATAAGGGTTGTGGGATAATTGCTTCAAAAGCATTTTCAACTCTTACCCATTGAGACTCTGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTGGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGc                                                                                                                                                                                                                                            >  1:442804/1‑231 (MQ=255)
             ttGGTGAATAATGGCTTGTGCTGCATTAAATAAGGGTTGTGGGATAATTGCTTCAAAAGCATTTTCAACTCTTACCCATTGAGACTCTGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGT‑CACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTg                                                                                                                                                                                                                       >  1:464184/1‑251 (MQ=255)
                    ataatGGCTTGTGCTGCATTAAATAAGGGTTGTGGGATAATTGCTTCAAAAGCATTTTCAACTCTTACCCATTGAGACTCTGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGc                                                                                                                                                                                                                                            >  1:365551/1‑224 (MQ=255)
                      aatGGCTTGTGCTGCATTAAATAAGGGTTGTGGGATAATTGCTTCAAAAGCATTTTCAACTCTTACCCATTGAGACTCTGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCg                                                                                                                                                                                                               <  1:226720/251‑1 (MQ=255)
                         ggCTTGTGCTGCATTAAATAAGGGTTGTGGGATAATTGCTTCAAAAGCATTTTCAACTCTTACCCATTGAGACTCTGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGttt                                                                                                                                                                                                            >  1:410516/1‑251 (MQ=255)
                               tgctgcATTAAATAAGGGTTGTGGGATAATTGCTTCAAAAGCATTTTCAACTCTTACCCATTGAGACTCTGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGt                                                                                                                                                                                                       <  1:722876/250‑1 (MQ=255)
                                        aaaTAAGGGTTGTGGGATAATTGCTTCAAAAGCATTTTCAACTCTTACCCATTGAGACTCTGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAAt                                                                                                                                                                                                                          <  1:388600/222‑1 (MQ=255)
                                                      ggATAATTGCTTCAAAAGCATTTTCAACTCTTACCCATTGAGACTCTGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTc                                                                                                                                                                                                      >  1:703826/1‑228 (MQ=255)
                                                               cTTCAAAAGCATTTTCAACTCTTACCCATTGAGACTCTGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGt                                                                                                                                                                                                                      <  1:27941/203‑1 (MQ=255)
                                                               cTTCAAAAGCATTTTCAACTCTTACCCATTGAGACTCTGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAaata                                                                                                                                                                      >  1:233699/1‑251 (MQ=255)
                                                                           tttCAACTCTTACCCATTGAGACTCTGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCa                                                                                                                                                          >  1:834934/1‑251 (MQ=255)
                                                                                 ctctTACCCATTGAGACTCTGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATaaaa                                                                                                                                                                                           <  1:822204/212‑1 (MQ=255)
                                                                                         cATTGAGACTCTGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCg                                                                                                                                             >  1:892223/1‑250 (MQ=255)
                                                                                           ttGAGACTCTGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCaa                                                                                                                                          >  1:496373/1‑251 (MQ=255)
                                                                                                 ctctGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGtaaata                                                                                                                                                                                              <  1:201443/193‑1 (MQ=255)
                                                                                                       aTTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGacac                                                                                                                              <  1:247483/251‑1 (MQ=255)
                                                                                                                  gTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTg                                                                                                                    >  1:721787/1‑250 (MQ=255)
                                                                                                                   tAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATg                                                                                                                                                                                                        <  1:241902/165‑1 (MQ=255)
                                                                                                                   tAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTg                                                                                                                                                              >  1:362243/1‑207 (MQ=255)
                                                                                                                              tCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTaa                                                                                                                                                                                                                                      <  1:825637/124‑1 (MQ=255)
                                                                                                                                            gATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAAt                                                                                                                                                                                                                          <  1:796638/122‑1 (MQ=255)
                                                                                                                                            gATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATg                                                                                                                                                                                                        <  1:170185/140‑1 (MQ=255)
                                                                                                                                                      aaaCATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAAtttt                                                                               >  1:818085/1‑251 (MQ=255)
                                                                                                                                                         cATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTgg                                                                             >  1:370065/1‑250 (MQ=255)
                                                                                                                                                         cATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTgg                                                                             >  1:368719/1‑250 (MQ=255)
                                                                                                                                                                  cTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAAt                                                                                                                                                                                          <  1:136537/132‑1 (MQ=255)
                                                                                                                                                                    aCATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGAtt                                                                                                                                                                               <  1:359081/141‑1 (MQ=255)
                                                                                                                                                                    aCATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAg                                                                  >  1:556267/1‑250 (MQ=255)
                                                                                                                                                                    aCATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGc                                                                 <  1:165812/251‑1 (MQ=255)
                                                                                                                                                                              cATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTaataat                                                       <  1:228932/251‑1 (MQ=255)
                                                                                                                                                                              cATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTaataat                                                       <  1:153540/251‑1 (MQ=255)
                                                                                                                                                                                ttaattaGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAg                                                     <  1:608333/251‑1 (MQ=255)
                                                                                                                                                                                  aattaGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGa                                                                                                                                                                                 <  1:695232/125‑1 (MQ=255)
                                                                                                                                                                                  aattaGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAgg                                                    >  1:703396/1‑250 (MQ=255)
                                                                                                                                                                                   attaGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGaa                                                                                                                                    >  1:589010/1‑169 (MQ=255)
                                                                                                                                                                                   attaGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGt                                                                                                      >  1:95572/1‑199 (MQ=255)
                                                                                                                                                                                       gAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCtt                                              >  1:378996/1‑251 (MQ=255)
                                                                                                                                                                                            tGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAAccc                                         <  1:634151/251‑1 (MQ=255)
                                                                                                                                                                                                ggACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGAt                                                                                                                                                                                    <  1:733570/108‑1 (MQ=255)
                                                                                                                                                                                                 gACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGttttt                                                                                           >  1:612884/1‑196 (MQ=255)
                                                                                                                                                                                                     acacCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAACCCAAATCCAg                                 >  1:99131/1‑250 (MQ=255)
                                                                                                                                                                                                        ccTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGaa                                                                                                                                    >  1:220693/1‑148 (MQ=255)
                                                                                                                                                                                                        ccTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAgg                                                    <  1:796985/228‑1 (MQ=255)
                                                                                                                                                                                                        ccTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAACCCAAATCCAGCTgg                             >  1:44815/1‑251 (MQ=255)
                                                                                                                                                                                                        ccTTTAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAACCCAAATCCAGCTgg                             >  1:338412/1‑251 (MQ=255)
                                                                                                                                                                                                           ttAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTtaat                                                          <  1:601823/219‑1 (MQ=255)
                                                                                                                                                                                                           ttAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTaataat                                                       >  1:187173/1‑222 (MQ=255)
                                                                                                                                                                                                           ttAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAACCCAAATcc                                   >  1:104875/1‑242 (MQ=255)
                                                                                                                                                                                                           ttAGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAACCCAAATCCAGCTGGTc                           >  1:832855/1‑250 (MQ=255)
                                                                                                                                                                                                             aGTCCACCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAgg                                                    >  1:123240/1‑223 (MQ=255)
                                                                                                                                                                                                                  aCCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGttttt                                                                                           >  1:159571/1‑179 (MQ=255)
                                                                                                                                                                                                                  aCCGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAACCCAAATCCAGCTGGTCCACCTTGa                   >  1:493797/1‑251 (MQ=255)
                                                                                                                                                                                                                    cGTGTATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAACCCAAATCCAGCTGGTCCACCTTGACg                 <  1:610424/251‑1 (MQ=255)
                                                                                                                                                                                                                     gtgtATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGc                                                   <  1:712998/216‑1 (MQ=255)
                                                                                                                                                                                                                     gtgtATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAACCCAAATCCAGCTGGTCCACCTTGACGa                >  1:898792/1‑251 (MQ=255)
                                                                                                                                                                                                                     gtgtATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAACCCAAATCCAGCTGGTCCACCTTGACGa                >  1:581815/1‑251 (MQ=255)
                                                                                                                                                                                                                     gtgtATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAACCCAAATCCAGCTGGTCCACCTTGACGa                >  1:841057/1‑251 (MQ=255)
                                                                                                                                                                                                                     gtgtATTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAACCCAAATCCAGCTGGTCCACCTTGACGa                >  1:301162/1‑251 (MQ=255)
                                                                                                                                                                                                                         aTTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTtaat                                                          <  1:18019/205‑1 (MQ=255)
                                                                                                                                                                                                                         aTTTCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAACCCAAATCCAGCTGGTCCACCTTGACGAAATc            <  1:392037/251‑1 (MQ=255)
                                                                                                                                                                                                                         aTTTCTATCTGTTAAAATACCTTGGGCATTAAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTaataat                                                       >  1:125073/1‑208 (MQ=255)
                                                                                                                                                                                                                          tttCTATCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGCAAAATAATTTTCTGTTCAAATTCAGGACACGCAATAAGAATGACACGATTCGACTGCAAACTCTTc                                                                                                          >  1:2535/1‑156 (MQ=255)
                                                                                                                                                                                                                               aTCTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAACCCAAATCCAGCTGGTCCACCTTGACg                 >  1:734725/1‑240 (MQ=255)
                                                                                                                                                                                                                                 cTGTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTg                                                                                                       >  1:811821/1‑152 (MQ=255)
                                                                                                                                                                                                                                   gTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTaataat                                                       >  1:36572/1‑198 (MQ=255)
                                                                                                                                                                                                                                   gTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAACCCAAATc                                    <  1:669228/217‑1 (MQ=255)
                                                                                                                                                                                                                                   gTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAACCCAAATCCAGCTGGTCCACCt                      >  1:529845/1‑231 (MQ=255)
                                                                                                                                                                                                                                   gTTAAAATACCTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCCGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAACCCAAATCCAGCTGGTCCACCTTGACGAAATCCGCGCtcaat  >  1:746448/1‑251 (MQ=255)
                                                                                                                                                                                                                                            |                                                                                                                                                                                                                                                 
GTTTTATTGAGCGTTGGTGAATAATGGCTTGTGCTGCATTAAATAAGGGTTGTGGGATAATTGCTTCAAAAGCATTTTCAACTCTTACCCATTGAGACTCTGGATTTTTACCACGTAACTTCCCCGTCTTTGATGTACAAGATTTATTCCAAACATTGTGCCCTACATATTTTTCATTAATTAGAATCTGATGGACTACACCTTTAGTCCACCGTGTATTTCTATCTGTTAAAATAACTTGGGCATTTAAACTATCTGCAATTTGTCGTTCCGTTTTATGTCTGTAAATAAAATCGTGATAGATTTGTAAAATAATTTTCTGTTCAAATTCAGGACCCGCAATAAGAATGACACGATCCGACTGCAAACTCTTCCTGTCACCCGTTTTTAGTTCAAATTTTGGCGAACCATCAGCACTTAATAATAGGCGTCTTAACCCAAATCCAGCTGGTCCACCTTGACGAAATCCGCGCTCAAT  >  1/308920‑309397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑