| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,975,982 | C→T | E257E (GAG→GAA) | unknown ← | RTX toxin transporter, determinant D |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,975,982 | 0 | C | T | 100.0% | 234.3 / NA | 82 | E257E (GAG→GAA) | unknown | RTX toxin transporter, determinant D |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (32/50); total (32/50) | |||||||||||
GTTGTACAGTACCTGATACAGGAGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGTTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCGTTTTCAACTTGCATTAAACTCGCCTTATATACCTCAAGCTCATTGATTGCATCCTGATATTTATTCTCTTCATCTAAAACTGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGCTCTGTATTAATCAGACCTTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCCGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATGGCGTTGTTTTTGCCAAGTAGAGAATTGTTCTTCAATCAGTAAAGTCACTCTTTTTTGATCGTTTTCCGTCATAA > 1/1975738‑1976223 | gctgtACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCa > 1:777437/3‑251 (MQ=255) gTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTaaaa > 1:871507/1‑250 (MQ=255) gTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTaaaa > 1:136234/1‑250 (MQ=255) tACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAAc < 1:767253/250‑1 (MQ=255) tACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAAc < 1:132765/250‑1 (MQ=255) acccgATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAAc < 1:627754/245‑1 (MQ=255) aTACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGt < 1:752268/251‑1 (MQ=255) tCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAg < 1:693931/251‑1 (MQ=255) cTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAACCCGTATGTTTTGCAATAGCA‑TGTTCCTtatat < 1:70760/251‑1 (MQ=255) cTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTtatat < 1:193628/251‑1 (MQ=255) cTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTtatat < 1:660437/251‑1 (MQ=255) ttGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTtatata < 1:471038/251‑1 (MQ=255) tGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGc < 1:408149/251‑1 (MQ=255) gTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGt > 1:120830/1‑211 (MQ=255) tttttGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAatcat > 1:178317/1‑250 (MQ=255) cagctCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAAc > 1:194617/5‑195 (MQ=255) cagctCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAatcatc > 1:649926/5‑243 (MQ=255) gctCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGa > 1:598578/3‑249 (MQ=255) ctCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACt < 1:58967/249‑1 (MQ=255) ctCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACt < 1:114981/249‑1 (MQ=255) aaTGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTgttc < 1:781088/251‑4 (MQ=255) aaTGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAAGCGGACTTgttc < 1:576111/251‑4 (MQ=255) cAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGt > 1:336852/1‑190 (MQ=255) cAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTAt < 1:318696/251‑1 (MQ=255) cAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTAt < 1:39352/251‑1 (MQ=255) aaTTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGAc < 1:105459/235‑1 (MQ=255) aaTTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATc < 1:193769/251‑1 (MQ=255) aaTTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATc < 1:513042/251‑1 (MQ=255) aTCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCat > 1:799740/1‑251 (MQ=255) cGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGc < 1:51090/180‑1 (MQ=255) gTTTTAGCTTGTTTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTcc < 1:438768/182‑1 (MQ=255) gTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGGTATTTATTTTCTTCATCTAAAAc < 1:770819/157‑1 (MQ=255) gTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAAc < 1:656104/157‑1 (MQ=255) gTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAAc > 1:504482/1‑157 (MQ=255) gTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTtatat < 1:733758/188‑1 (MQ=255) gTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGc < 1:181560/193‑1 (MQ=255) gTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTAt > 1:601263/1‑225 (MQ=255) gTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAAc < 1:48847/147‑1 (MQ=255) tAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAAc < 1:408547/251‑1 (MQ=255) tAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAAc < 1:198472/251‑1 (MQ=255) atatCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCa < 1:860236/159‑1 (MQ=255) atatCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAg < 1:782420/251‑1 (MQ=255) tttttGAACAATTGTGTGACTAATTCCTGCTCTTCCTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGc > 1:638874/1‑170 (MQ=255) aCAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGctt > 1:670150/1‑249 (MQ=255) aTTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGc < 1:155644/160‑1 (MQ=255) ttGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTAt < 1:219466/191‑1 (MQ=255) gtgtgACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTtatata < 1:364217/153‑1 (MQ=255) gtgtgACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAg < 1:746525/155‑1 (MQ=255) gACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTAt > 1:116335/1‑185 (MQ=255) gACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTaa > 1:435061/1‑251 (MQ=255) aCTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGc < 1:590578/152‑1 (MQ=255) cTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAgg < 1:183096/251‑1 (MQ=255) tcttTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTctgc > 1:733433/1‑218 (MQ=255) ggCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATgg > 1:406150/1‑250 (MQ=255) aaaaCTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCAGCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATGGCGTTGttt < 1:439934/251‑1 (MQ=255) cattttCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATGGCGTTGTTTTTGCCaa > 1:647008/3‑251 (MQ=255) attttCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAAt > 1:293342/2‑96 (MQ=255) cTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATGTTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATGGCGTTGTTTTTGCCAAGTAGAGAAt < 1:121285/251‑1 (MQ=255) cTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATGGCGTTGTTTTTGCCAAGTAGAGAAt < 1:460123/251‑1 (MQ=255) cTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATGGCGTTGTTTTTGCCAAGTAGAGAAt < 1:747743/251‑1 (MQ=255) gCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAAt > 1:235635/1‑85 (MQ=255) gCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATGGCGTTGTTTTTGCCAAGTAGAGAATTg > 1:839066/1‑250 (MQ=255) gCCTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTc < 1:743587/154‑1 (MQ=255) ccTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAAc < 1:851052/58‑1 (MQ=255) ccTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTTTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATAttttt > 1:126148/1‑147 (MQ=255) ccTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATc < 1:425224/131‑1 (MQ=255) ccTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATc > 1:870081/1‑131 (MQ=255) ccTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATGGCGTTGTTTTTGCCAAGTAGAGAATTGCTCTTCAATCAGt > 1:199800/1‑251 (MQ=255) ccTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATGGCGTTGTTTTTGCCAAGTAGAGAATTGCTCTTCAATCAGt > 1:352678/1‑251 (MQ=255) cTTATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGt < 1:109787/64‑1 (MQ=255) ttATATACTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATGGCGTTGTTTTTGCCAAGTAGAGAATTGCTCTTCAATCAGTaa > 1:75601/1‑251 (MQ=255) atataCTTCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAAc > 1:33051/1‑161 (MQ=255) tacttCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATGGCGTTGTTTTTGCCAAGTAGAGAAt < 1:395105/225‑1 (MQ=255) cttCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATGGCGTTGTTTTTGCCAAGTAGAGAAt < 1:379561/225‑1 (MQ=255) cttCAAGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATGGCGTTGTTTTTGCCAAGTAGAGAATTGCTCTTCAATCAGTAAAGTCAc > 1:262639/3‑250 (MQ=255) aGCTCATTGATTGCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATGGCGTTGTTTTTGCCAAGTAGAGAATTGCTCTTCAATCAGTAAAGTCACCCtttt > 1:6896/1‑251 (MQ=255) gattgCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAAcc > 1:52450/1‑114 (MQ=255) attgCATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAgg > 1:845355/1‑178 (MQ=255) cATCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAGGt < 1:542720/175‑1 (MQ=255) tCCTGATATTTATTTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATGGCGTTGTTTTTGCCAAGTAGAGAATTGCTCTTCAATc < 1:408999/219‑1 (MQ=255) atatTTAATTTCTTCAACTAAAACCCTAAGTTTTTCAAAAGCATTGTT‑CTTAAATAAAGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATGGCGTTGTTTTTGCCAAGTAGAGAATTGCTCTTCAATCAGTAAAGTCACCCTTTTTTGATCGTTTTCCGTCATaa < 1:547933/251‑1 (MQ=255) tatttattTTCTTCATCTAAAACCGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGTTCTGTATTAATCAAACCCTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCTGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATGGCGTTGTTTTTGCCAAGTAGAGAAt < 1:519736/201‑1 (MQ=255) | GTTGTACAGTACCTGATACAGGAGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGTTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCGTTTTCAACTTGCATTAAACTCGCCTTATATACCTCAAGCTCATTGATTGCATCCTGATATTTATTCTCTTCATCTAAAACTGTATGTTTTGCAATAGCA‑TGTTCCTTATATAAGGCTCTAAAATCATCCAATCGGACTTGCTCTGTATTAATCAGACCTTCATATTTTTTTATTCGTGCCAAATAACTGAGTTTTTCCGCTTCTTTTTTATTAAGATTCAAGGTTTTCTGATGGCGTTGTTTTTGCCAAGTAGAGAATTGTTCTTCAATCAGTAAAGTCACTCTTTTTTGATCGTTTTCCGTCATAA > 1/1975738‑1976223 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |