Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,975,730 T→C K341K (AAA→AAG)  unknown ← RTX toxin transporter, determinant D

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,975,7300TC100.0% 188.8 / NA 63K341K (AAA→AAG) unknownRTX toxin transporter, determinant D
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (36/27);  total (36/27)

ATTAAATACAAGTCCAAGCTTTGGATGTTCAATCGCATCTAAAGTAATATTTTTCACTTTTCCCGTTAAATAACCATAACGGGTATAGGGGAAGGCTTCGACCTTAATTACAACCTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCAGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACTTTTAATTGTTGTACAGTACCTGATACAGGAGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGTTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCGTTTTCAACTTGCATTAAACTCGCCTTATATACCTCAAGCTCATTGATTGCAT  >  1/1975487‑1975968
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                              
aTTAAATACAAGTCCAAGCTTTGGATGTTCAATCGCATCTAAAGTAATATTTTTCACTTTTCCTGTTAAGTAGCCATAACGGGTATAGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAAtt                                                                                                                                                                                                                                         >  1:781547/1‑251 (MQ=255)
          aGTCCAAGCTTTGGATGTTCAATCGCATCTAAAGTAATATTTTTCACTTTTCCTGTTAAGTAGCCATAACGGGTATAGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAAtt                                                                                                                                                                                                                                         >  1:560632/1‑241 (MQ=255)
              cAAGCTTTGGATGTTCAATCGCATCTAAAGTAATATTTTTCACTTTTCCTGTTAAGTAGCCATAACGGGTATAGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTAccc                                                                                                                                                                                                                           <  1:575897/251‑2 (MQ=255)
                 gCTTTGGATGTTCAATCGCATCTAAAGTAATATTTTTCACTTTTCCTGTTAAGTAGCCATAACGGGTATAGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAg                                                                                                                                                                                                                                >  1:704373/1‑243 (MQ=255)
                  cTTTGGATGTTCAATCGCATCTAAAGTAATATTTTTCACTTTTCCTGTTAAGTAGCCATAACGGGTATAGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGAt                                                                                                                                                                                                                        <  1:13923/250‑1 (MQ=255)
                  cTTTGGATGTTCAATCGCATCTAAAGTAATATTTTTCACTTTTCCTGTTAAGTAGCCATAACGGGTATAGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGAt                                                                                                                                                                                                                        <  1:683002/250‑1 (MQ=255)
                        aTGTTCAATCGCATCTAAAGTAATATTTTTCACTTTTCCTGTTAAGTAGCCATAACGGGTATAGGGGAAGGCTTCAACCTGAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAggg                                                                                                                                                                                                                  <  1:435212/250‑2 (MQ=255)
                          gTTCAATCGCATCTAAAGTAATATTTTTCACTTTTCCTGTTAAGTAGCCATAACGGGTATAGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTATCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAgggg                                                                                                                                                                                                                 >  1:256899/1‑247 (MQ=255)
                          gTTCAATCGCATCTAAAGTAATATTTTTCACTTTTCCTGTTAAGTAGCCATAACGGGTATAGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAgggg                                                                                                                                                                                                                 >  1:269427/1‑247 (MQ=255)
                          gTTCAATCGCATCTAAAGTAATATTTTTCACTTTTCCTGTTAAGTAGCCATAACGGGTATAGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAgg                                                                                                                                                                                                                   <  1:703151/247‑1 (MQ=255)
                               aTCGCATCTAAAGTAATATTTTTCACTTTTCCTGTTAAGTAGCCATAACGGGTATAGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAAt                                                                                                                                                                                                          <  1:204569/251‑1 (MQ=255)
                                   cATCTAAAGTAATATTTTTCACTTTTCCTGTTAAGTAGCCATAACGGGTATAGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAgg                                                                                                                                                                                                                   <  1:614661/238‑1 (MQ=255)
                                                                gTTAAGTAGCCATAACGGGTATAGGGGAAGGCTTCAACCTTAATTACGATGTCTTGCCCTTCTTTCACAAAACCACTATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGACCCTTTAATTGCTGTACAGTACCCGATAc                                                                                                                                                                                                                      >  1:287122/1‑206 (MQ=255)
                                                                        gccATAACGGGTATAGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGa                                                                                                                                                                 >  1:221135/2‑251 (MQ=255)
                                                                             aaCGGGTATAGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGt                                                                                                                                                             >  1:443795/1‑250 (MQ=255)
                                                                               cGGGTATAGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCaa                                                                                                                                                          >  1:150321/1‑251 (MQ=255)
                                                                                 ggTATAGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGAt                                                                                                                                                                                                                        >  1:182960/1‑187 (MQ=255)
                                                                                  gTATAGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAGGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATaa                                                                                                                                                       >  1:76974/1‑251 (MQ=255)
                                                                                  gTATAGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATaa                                                                                                                                                       >  1:119013/1‑251 (MQ=255)
                                                                                    ataGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAAt                                                                                                                                                     >  1:756900/1‑251 (MQ=255)
                                                                                    ataGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAAt                                                                                                                                                     >  1:233036/1‑251 (MQ=255)
                                                                                    ataGGGGAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAAt                                                                                                                                                     >  1:64578/1‑251 (MQ=255)
                                                                                       ggggAAGGCTTCAACCTTAATTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTca                                                                                                                                                  >  1:846557/1‑251 (MQ=255)
                                                                                                         aaTTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTg                                                                                                                                                                                 <  1:351074/202‑1 (MQ=255)
                                                                                                          aTTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGAt                                                                                                                                                                                                                        <  1:528020/162‑1 (MQ=255)
                                                                                                          aTTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATg                                                                                                                                                              >  1:831769/1‑220 (MQ=255)
                                                                                                          aTTACGACGTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCAATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGAt                                                                                                                                                                                                                        <  1:708684/162‑1 (MQ=255)
                                                                                                                acgtctTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCt                                                                                                                          <  1:661706/247‑1 (MQ=255)
                                                                                                                         ccTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAat                                                                                                                <  1:590514/251‑1 (MQ=255)
                                                                                                                         ccTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAat                                                                                                                <  1:482718/251‑1 (MQ=255)
                                                                                                                                      aaCCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAAc                                                                                                   <  1:782514/251‑1 (MQ=255)
                                                                                                                                       aCCAATATCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAatat                                                                                                              >  1:740710/1‑239 (MQ=255)
                                                                                                                                              tCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATtgtgt                                                                                           >  1:337369/1‑251 (MQ=255)
                                                                                                                                              tCTTTATTTTGAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATtgtgt                                                                                           >  1:690683/1‑251 (MQ=255)
                                                                                                                                                        gAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATAc                                                                                                                                                                                                                      <  1:109249/118‑1 (MQ=255)
                                                                                                                                                        gAATAAGTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATtg                                                                                              >  1:795207/1‑238 (MQ=255)
                                                                                                                                                              gTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGct                                                                             >  1:863619/1‑249 (MQ=255)
                                                                                                                                                              gTGCGGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGct                                                                             >  1:481154/1‑249 (MQ=255)
                                                                                                                                                                       cTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTAc                                                                                                                                                                                                                                  >  1:753510/1‑91 (MQ=255)
                                                                                                                                                                       cTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCt                                                                                                                          >  1:271488/1‑195 (MQ=255)
                                                                                                                                                                       cTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGcc                                                                  <  1:698165/251‑1 (MQ=255)
                                                                                                                                                                          cAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTgg                                                                    >  1:744762/1‑246 (MQ=255)
                                                                                                                                                                                                     ccATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTaaa                                    >  1:74766/1‑251 (MQ=255)
                                                                                                                                                                                                      cATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAAc                                   <  1:70336/251‑1 (MQ=255)
                                                                                                                                                                                                             gTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCtt                            >  1:372576/1‑251 (MQ=255)
                                                                                                                                                                                                                    ccGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTtatat                        <  1:673035/248‑1 (MQ=255)
                                                                                                                                                                                                                    ccGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTtatat                        <  1:169299/248‑1 (MQ=255)
                                                                                                                                                                                                                    ccGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTtatat                        <  1:794088/248‑1 (MQ=255)
                                                                                                                                                                                                                    ccGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTtatat                        <  1:386683/248‑1 (MQ=255)
                                                                                                                                                                                                                    ccGTAGTAACAACGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTtatat                        <  1:44844/248‑1 (MQ=255)
                                                                                                                                                                                                                               acGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGctc                                                                            >  1:541650/1‑185 (MQ=255)
                                                                                                                                                                                                                               acGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGc               >  1:251568/1‑246 (MQ=255)
                                                                                                                                                                                                                                cGCCATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATActtc                   <  1:717881/241‑4 (MQ=255)
                                                                                                                                                                                                                                   cATCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCattgatt      >  1:659155/1‑251 (MQ=255)
                                                                                                                                                                                                                                     tCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTACTTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAAc                                   >  1:431042/1‑220 (MQ=255)
                                                                                                                                                                                                                                     tCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATActtc                   <  1:458270/236‑4 (MQ=255)
                                                                                                                                                                                                                                     tCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCt              >  1:648322/1‑241 (MQ=255)
                                                                                                                                                                                                                                     tCTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGc    <  1:387771/251‑1 (MQ=255)
                                                                                                                                                                                                                                      cTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATtg                                                                                              <  1:850758/160‑1 (MQ=255)
                                                                                                                                                                                                                                      cTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAAc                                   >  1:855125/1‑219 (MQ=255)
                                                                                                                                                                                                                                      cTATTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATAc                      >  1:59625/1‑232 (MQ=255)
                                                                                                                                                                                                                                        aTTGTGTGAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCATTTTCAACTTGCATTAAACTCGCCTTATATACTTCAAGCTCATTGATTGCAt  >  1:784155/1‑250 (MQ=255)
                                                                                                                                                                                                                                           gtgtgAACCTTTAATTGCTGTACAGTACCCGATACAGGGGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGCTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCt                                                                                                                          <  1:260991/127‑1 (MQ=255)
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                              
ATTAAATACAAGTCCAAGCTTTGGATGTTCAATCGCATCTAAAGTAATATTTTTCACTTTTCCCGTTAAATAACCATAACGGGTATAGGGGAAGGCTTCGACCTTAATTACAACCTCTTGCCCTTCTTTCACAAAACCAATATCTTTATTTTGAATAAGTGCAGTGACTTCAAGGGAATCTTCTTCCGGCACAACTACCATTAATGTTTCAGCCGTAGTAACAACGCCATCTATTGTGTGAACTTTTAATTGTTGTACAGTACCTGATACAGGAGCTCGAATTTCAGAGACTTGCTGGCGTTGATTGTTTTTGTCCAGTTCGAATGTCAATAAATTCACATTATCCGTCGCCTGTTTTAGCTTGTCTAAAATATCATTTTTGAACAATTGTGTGACTAATTCCTGCTCTTCTTTGGCCAATAAAACTTCGTTTTCAACTTGCATTAAACTCGCCTTATATACCTCAAGCTCATTGATTGCAT  >  1/1975487‑1975968

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑