| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 290,915 | A→C | F14L (TTT→TTG) | unknown ← | Membrane protein LAPB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 290,915 | 0 | A | C | 98.7% | 210.8 / NA | 74 | F14L (TTT→TTG) | unknown | Membrane protein LAPB |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base C (29/44); total (29/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AATGTCAGGTTGGCGCACATTTCTTCAAAACGCTGCCGTGAGTTAAAACGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAAAAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTATATTAAACTGAATTATCACAAAACCCATTTTTTAACCAGTTCGCCTAATCTGAAAAGTTTG > 1/290679‑291157 | aaTGTCAGGTTGGCGCACATTTCTTCAAAACGCTGCCGTGAGTTAAAACGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAgg < 1:506005/251‑1 (MQ=255) tGTCAGGTTGGCGCACATTTCTTCAAAACGCTGCCGTGAGTTAAAACGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCGACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGcc < 1:471556/251‑1 (MQ=255) gTTGGCGCACATTTCTTCAAAACGCTGCCGTGAGTTAAAACGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGa < 1:777819/250‑1 (MQ=255) cacaTTTCTTCAAAACGCTGCCGTGAGTTAAAACGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGAc < 1:360739/250‑1 (MQ=255) cacaTTTCTTCAAAACGCTGCCGTGAGTTAAAACGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGAc < 1:236659/250‑1 (MQ=255) cacaTTTCTTCAAAACGCTGCCGTGAGTTAAAACGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGAc < 1:282735/250‑1 (MQ=255) cacaTTTCTTCAAAACGCTGCCGTGAGTTAAAACGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACg > 1:458718/1‑251 (MQ=255) ttcttcAAAACGCTGCCGTGAGTTAAAACGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACgttgtt < 1:398104/251‑1 (MQ=255) cttcAAAACGCTGCCGTGAGTTAAAACGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGcc < 1:563361/231‑1 (MQ=255) cttcAAAACGCTGCCGTGAGTTAAAACGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCg > 1:535563/1‑251 (MQ=255) tcAAAACGCTGCCGTGAGTTAAAACGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGt < 1:414908/251‑1 (MQ=255) ccGTGAGTTAAAACGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGt < 1:658385/250‑1 (MQ=255) gAGTTAAAACGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCgg > 1:566279/1‑235 (MQ=255) gTTAAAACGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACa > 1:179075/1‑251 (MQ=255) ttAAAACGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTAc < 1:44474/249‑1 (MQ=255) cGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGa > 1:344797/1‑210 (MQ=255) cGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATaaa > 1:638922/1‑251 (MQ=255) ttATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATaaaaaa < 1:63854/251‑1 (MQ=255) tATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAAt < 1:263369/251‑1 (MQ=255) tccaaaaGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTgg > 1:512442/4‑251 (MQ=255) aTGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCg > 1:264365/1‑251 (MQ=255) gAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCa > 1:798815/1‑251 (MQ=255) aCCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGACAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATa > 1:545305/1‑251 (MQ=255) ccAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATaa > 1:838345/1‑251 (MQ=255) aaGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATc < 1:498840/251‑1 (MQ=255) ggggTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATcc > 1:310868/1‑250 (MQ=255) gggTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATcc < 1:564776/249‑1 (MQ=255) tAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCcttct < 1:37411/251‑1 (MQ=255) aCTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGTCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCttt < 1:424167/251‑1 (MQ=255) aCTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCttt < 1:544836/251‑1 (MQ=255) cTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACgttgtt < 1:338981/190‑1 (MQ=255) cATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGa < 1:341360/161‑1 (MQ=255) cATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGAc > 1:868249/1‑168 (MQ=255) gAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATcc < 1:35629/223‑1 (MQ=255) aTCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCgtg > 1:261599/1‑251 (MQ=255) ccAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGa > 1:582049/1‑251 (MQ=255) gATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTAtt > 1:268585/1‑251 (MQ=255) tGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTAGTGTCGATAAAGTATTCTAgc < 1:676395/251‑1 (MQ=255) ttACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAgccgc > 1:88542/1‑250 (MQ=255) aCAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCaa > 1:583028/1‑251 (MQ=255) cGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCttt < 1:96734/193‑1 (MQ=255) cTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCa < 1:564929/250‑1 (MQ=255) ttttttAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGa > 1:641576/1‑251 (MQ=255) ttttAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATaaaaa < 1:269933/153‑1 (MQ=255) tAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAAt < 1:577763/149‑1 (MQ=255) tGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACg < 1:663470/107‑1 (MQ=255) cAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAAcc > 1:586767/1‑248 (MQ=255) gtgtAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGttt > 1:282588/1‑123 (MQ=255) gtgtAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTAtttt < 1:685008/150‑1 (MQ=255) gtgtAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCAttg < 1:276487/229‑1 (MQ=255) gtgtAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAac > 1:442019/1‑235 (MQ=255) cGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTatat < 1:268581/248‑1 (MQ=255) cGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTatat < 1:27942/248‑1 (MQ=255) cGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTatat < 1:1671/248‑1 (MQ=255) aaCGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTATATTAAAc < 1:269107/251‑1 (MQ=255) aaCGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTATATTAAAc < 1:766891/251‑1 (MQ=255) aaCGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTATATTAAAc < 1:580260/251‑1 (MQ=255) cGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAgc < 1:481993/200‑1 (MQ=255) aaaaCGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCcttct < 1:549978/138‑1 (MQ=255) cGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTATATTAAACTGAATTATCACAAAACCCAt > 1:520669/1‑251 (MQ=255) tCATACGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTATATTAAAc > 1:15290/1‑227 (MQ=255) cGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTATATTAAACTGAATTATCACAAAACCCATTTTTTAAc > 1:388733/1‑250 (MQ=255) cGATAAGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTATATTAAACTGAATTATCACAAAACCCATTTTTTAAc > 1:555226/1‑250 (MQ=255) aaGATTTTTTACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTATATTAAAc < 1:402783/218‑1 (MQ=255) tACCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTCCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTATATTAAACTGAATTATCACAAAACCCATTTTTTAACCAGTTCGCCTAATc < 1:67186/251‑1 (MQ=255) aCCTTGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATaaaaaa < 1:636188/84‑1 (MQ=255) tGATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTATATTAAACTGAATTATCACAAAACCCATTTTTTAACCAGTTCGCCTAATCTGaaa < 1:169147/251‑1 (MQ=255) gATCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTATATTAAACTGAATTATCACAAAACCCATTTTTTAACCAGTTCGCCTAATCTGaaaa > 1:79811/1‑251 (MQ=255) aaagggaaataAAAAAAAAGGATCAGGCCAATGGAAAGGGCGTTTGTCCGTCATGGTTAGTTTTTAAAGAATAAAAAATTGGCGTTTTTTTGCATAAACCCCTCTTTTTTGGATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTATATTAAACTGAATTATCACAAAACCCATTTTTTAACCAGTTCGCCTAATCTGaaa < 1:270099/241‑1 (MQ=255) aTCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTATATTAAACTGAATTATCACAAAACCCATTTTTTAACCAGTTCGCCTAATCTGAAAAg < 1:335639/251‑1 (MQ=255) aTCCGGATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTATATTAAACTGAATTATCACAAAACCCATTTTTTAACCAGTTCGCCTAATCTGAAAAg < 1:75220/251‑1 (MQ=255) ggATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCAtt < 1:410104/164‑1 (MQ=255) ggATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTATATTAAACTGAATTATCACAAAACCCATTTTTTAACCAGTTCGCCTAATCTGAAAAGTTTg > 1:808712/1‑251 (MQ=255) gATATAACAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTATATTAAACTGAATTATCACAAAACCCATTTTTTAACCAGTTCGCCTa > 1:852202/1‑236 (MQ=255) | AATGTCAGGTTGGCGCACATTTCTTCAAAACGCTGCCGTGAGTTAAAACGCTTATCCAAAAAGCGATGAACCAAGGGGTAACTAAAACCCGGGCGCGCATTGAGCAACATCACCAACAACGGATTTTGGTTTACAAAACGCTCAAATTTTTTAATAGTTTGCCAGTGTAACAGCGAACGTAAATGATAGCGAAAACGCTTCATACGATAAGATTTTTTACCTTGATCCGGATATAAAAAAAACGGATCAGGCCATTGATAAGGACGTTGTTCGGTCATGTTTAGTTTTTACAGAATAAAAAATTGGCGTATTTTCGCATAATCCCTTCTTTTTTGCATTTTTTTATCGTTTTTTTCGTGTCGATAAAGTATTCTAGCCGCCAAATTATCATTGTTGAACACGAGAAAACCATGTCGTATATTAAACTGAATTATCACAAAACCCATTTTTTAACCAGTTCGCCTAATCTGAAAAGTTTG > 1/290679‑291157 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |