Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,973,093 C→T intergenic (+8/‑47) unknown → / → unknown 3D‑(3,5/4)‑trihydroxycyclohexane‑1,2‑dione hydrolase (EC 3.7.1.22)/Inosose dehydratase (EC 4.2.1.44)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,973,0930CT100.0% 199.5 / NA 70intergenic (+8/‑47)unknown/unknown3D‑(3,5/4)‑trihydroxycyclohexane‑1,2‑dione hydrolase (EC 3.7.1.22)/Inosose dehydratase (EC 4.2.1.44)
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (34/36);  total (34/36)

TTGTAAAACCTATAAAGTCACCACTGAAGAGGAATTACGCGCCGCCCTTGCCGATGCGAAAAAACAAACCGTCTCTACGTTGATTGACATAAAAGTCTTGCCAAAAACCATGATTCACGGCTACGGCAGCTGGTGGCACGTTGGCGTAGCAGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCATAAAAGCAGCGTGAAACACATTAACGAAGCAAGACGCTATTAATCCG‑‑ATTCAATTTATTATCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTCAGTGAAATGGCACTTGCGGGTTTTACCGGATGTGAAGTTGGAAATAAATATCCGCGCGACGTGGACGTGTTAAAACATAAGCTGGCGGTT  >  1/1972857‑1973328
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                           
ttgcaaaaCCTATAAAGTCACCACCGAAGAGGAATTACGCGCCGCCCTCGCCGATGCGCAAAAACAAACCGTCTCTACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATttatttct                                                                                                                                                                                                                                  >  1:750369/5‑247 (MQ=255)
        ccTATAAAGTCACCACCGAAGAGGAATTACGCGCCGCCCTCGCCGATGCGCAAAAACAAACCGTCTCTACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTaa                                                                                                                                                                                                                        >  1:27392/1‑251 (MQ=255)
                gTCACCACCGAAGAGGAATTACGCGCCGCCCTCGCCGATGCGCAAAAACAAACCGTCTCTACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAAcc                                                                                                                                                                                                                      >  1:261664/1‑245 (MQ=255)
                gTCACCACCGAAGAGGAATTACGCGCCGCCCTCGCCGATGCGCAAAAACAAACCGTCTCTACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCAct                                                                                                                                                                                                                   >  1:807602/1‑248 (MQ=255)
                    ccacCGAAGAGGAATTACGCGCCGCCCTCGCCGATGCGCAAAAACAAACCGTCTCTACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAAcc                                                                                                                                                                                                                      >  1:76704/1‑241 (MQ=255)
                      accgAAGAGGAATTACGCGCCGCCCTCGCCGATGCGCAAAAACAAACCGTCTCTACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTgaga                                                                                                                                                                                                          <  1:891012/248‑1 (MQ=255)
                        cgAAGAGGAATTACGCGCCGCCCTCGCCGATGCGCAAAAACAAACCGTCTCTACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAg                                                                                                                                                                                                        <  1:712189/250‑1 (MQ=255)
                            gagGAATTACGCGCCGCCCTCGCCGATGCGCAAAAACAAACCGTCTCTACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAAtt                                                                                                                                                                                                                           >  1:485852/1‑228 (MQ=255)
                              ggAATTACGCGCCGCCCTCGCCGATGCGCAAAAACAAACCGTCTCTACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTg                                                                                                                                                                                                             <  1:375328/240‑1 (MQ=255)
                               gAATTACGCGCCGCCCTCGCCGATGCGCAAAAACAAACCGTCTCTACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAac                                                                                                                                                                                                  <  1:812521/250‑1 (MQ=255)
                                aaTTACGCGCCGCCCTCGCCGATGCGCAAAAACAAACCGTCTCTACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAacac                                                                                                                                                                                                <  1:182787/251‑1 (MQ=255)
                                     cgcgCCGCCCTCGCCGATGCGCAAAAACAAACCGTCTCTACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGa                                                                                                                                                                                           <  1:584368/251‑1 (MQ=255)
                                           gccCTCGCCGATGCGCAAAAACAAACCGTCTCTACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGaa                                                                                                                                                                                          >  1:683153/1‑246 (MQ=255)
                                                  ccGATGCGCAAAAACAAACCGTCTCTACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACg                                                                                                                                                                               <  1:308149/250‑1 (MQ=255)
                                                            aaaaCAAACCGTCTCTACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGt                                                                                                                                                                    <  1:739873/251‑1 (MQ=255)
                                                                       tctcTACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAg                                                                                                                                                                                                        >  1:29164/1‑204 (MQ=255)
                                                                       tctcTACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAAt                                                                                                                                                         >  1:364495/1‑251 (MQ=255)
                                                                       tctcTACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGACATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTgaga                                                                                                                                                                                                          >  1:477665/1‑202 (MQ=255)
                                                                        ctctACGCTGATTGACATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTg                                                                                                                                                                                                             <  1:876059/198‑1 (MQ=255)
                                                                               ctgattgaCATAAAAGTCTTGTCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGa                                                                                                                                                 >  1:800439/2‑251 (MQ=255)
                                                                                tgattgaCATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGAc                                                                                                                                                <  1:144527/251‑1 (MQ=255)
                                                                                      aCATAAAAGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACga                                                                                                                                          <  1:152660/251‑1 (MQ=255)
                                                                                          aaaaGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACgatgat                                                                                                                                      <  1:256080/251‑1 (MQ=255)
                                                                                          aaaaGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACgatgat                                                                                                                                      <  1:136228/251‑1 (MQ=255)
                                                                                          aaaaGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACgatgat                                                                                                                                      <  1:878330/251‑1 (MQ=255)
                                                                                           aaaGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGata                                                                                                                                     <  1:319500/251‑1 (MQ=255)
                                                                                            aaGTCTTGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGatat                                                                                                                                    <  1:634394/251‑1 (MQ=255)
                                                                                                  tGCCGAAAACCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAA‑‑ACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATc                                                                                                                            <  1:644104/251‑1 (MQ=255)
                                                                                                   gccgaaaaCCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTg                                                                                                                                                                                                             >  1:65476/5‑171 (MQ=255)
                                                                                                    ccgaaaaCCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATc                                                                                                                            <  1:186878/248‑1 (MQ=255)
                                                                                                    ccgaaaaCCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATc                                                                                                                            <  1:590094/248‑1 (MQ=255)
                                                                                                          aCCATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAg                                                                                                                                                                                                        >  1:858825/1‑169 (MQ=255)
                                                                                                           ccATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTAt                                                                                                                                                                  >  1:177016/1‑206 (MQ=255)
                                                                                                           ccATGATCCACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCaa                                                                                                                     >  1:95107/1‑251 (MQ=255)
                                                                                                                atccACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACga                                                                                                                                          <  1:371361/222‑1 (MQ=255)
                                                                                                                 tccACGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGaa                                                                                                               >  1:769742/3‑251 (MQ=255)
                                                                                                                     cGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGc                                                                                                                                                                                       <  1:585895/175‑1 (MQ=255)
                                                                                                                     cGGCTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGt                                                                                                                                                                    <  1:835324/194‑1 (MQ=255)
                                                                                                                        cTACGGCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCtt                                                                                                         <  1:719622/250‑1 (MQ=255)
                                                                                                                             gCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAAc                                                                                                    <  1:770306/250‑1 (MQ=255)
                                                                                                                             gCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAAc                                                                                                    <  1:758827/250‑1 (MQ=255)
                                                                                                                             gCAGCTGGTGGCACGTCGGCGTGCCGGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTCTGAAc                                                                                                    <  1:690253/250‑1 (MQ=255)
                                                                                                                                       gcacgtcggcgtgccggAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATgtgtaag                                                                                          <  1:659419/234‑4 (MQ=255)
                                                                                                                                        cacgtcggcgtgccggAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTAAGTg                                                                                        <  1:867296/236‑1 (MQ=255)
                                                                                                                                        cacgtcggcgtgccggAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTAAGTg                                                                                        <  1:364018/236‑1 (MQ=255)
                                                                                                                                        cacgtcggcgtgccggAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTAAGTg                                                                                        <  1:178289/236‑1 (MQ=255)
                                                                                                                                        cacgtcggcgtgccggAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTAAGTg                                                                                        <  1:801900/236‑1 (MQ=255)
                                                                                                                                                          gtgtCGGAAAAAGAAAAAATCCGCAAAGCGCACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATc                                                                                                                            >  1:877111/1‑197 (MQ=255)
                                                                                                                                                                                      cgcACAAAAACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTAAGTGAAATGGCACTTGCGGGTTTTACCGGATGTGAAGTTGGaaataaat                                           <  1:683802/250‑1 (MQ=255)
                                                                                                                                                                                        cacaaaaACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCAc                                                                                                                                                                                                                    >  1:512952/4‑79 (MQ=255)
                                                                                                                                                                                        cacaaaaACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTg                                                                                                                                                                                                             >  1:342595/4‑86 (MQ=255)
                                                                                                                                                                                        cacaaaaACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACga                                                                                                                                          >  1:757546/4‑153 (MQ=255)
                                                                                                                                                                                        cacaaaaACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAAc                                                                                                    >  1:419906/4‑191 (MQ=255)
                                                                                                                                                                                        cacaaaaACAGCGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAAtgt                                                                                               >  1:369599/4‑196 (MQ=255)
                                                                                                                                                                                             aaacagcGTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTAAGTGAAATGGCACTTGCGGGTTTTACCGGATGTGAAGTTGGAAATAAATATCcgcg                                    >  1:222937/4‑250 (MQ=255)
                                                                                                                                                                                                    gTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGt                                                                                                                                                                    >  1:866960/1‑115 (MQ=255)
                                                                                                                                                                                                    gTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGc                                                                                                                       <  1:563772/160‑1 (MQ=255)
                                                                                                                                                                                                    gTGAAACACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTAAGTGAAATGGCACTTGCGGGTTTTACCGGATGTGAAGTTGGAAATAAATATCCGCGCgatgtgg                            >  1:222725/1‑251 (MQ=255)
                                                                                                                                                                                                       aaaCACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGc                                                                                                                       >  1:223263/1‑157 (MQ=255)
                                                                                                                                                                                                       aaaCACATTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTAAGTGAAATGGCACTTGCGGGTTTTACCGGATGTGAAGTTGGAAATAAATATCCGCGCgatgtggaag                         <  1:858445/251‑3 (MQ=255)
                                                                                                                                                                                                          cacaTTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTAAGTGAAATGGCACTTGCGGGTTTTACCGGATGTGAAGTTGGAAATAAATATCCGCGCgatgtggaag                         <  1:363985/248‑3 (MQ=255)
                                                                                                                                                                                                            caTTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGatat                                                                                                                                    >  1:505000/1‑139 (MQ=255)
                                                                                                                                                                                                            caTTAACGAAGCAAGACGTTATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTAAGTGAAATGGCACTTGCGGGTTTTACCGGATGTGAAGTTGGAAATAAATATCCGCGCGATGTGGAAGTGTTa                    >  1:477693/1‑251 (MQ=255)
                                                                                                                                                                                                                           acgttATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTAAGTGAAATGGCACTTGCGGGTTTTACCGGATGTGAAg                                                       <  1:49155/197‑1 (MQ=255)
                                                                                                                                                                                                                            cgttATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTAAGTGAAATGGCACTTGCGGGTTTTACCGGATGTGAAGTTGGAAATAAATATCCGCGCgatgtggaag                         >  1:494098/4‑228 (MQ=255)
                                                                                                                                                                                                                              ttATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTAAGTGAAATGGCACTTGCGGGTTTTACCGGATGTGAAGTTGGAAATAAATATCCGCGCGATGTGGAAGTGTTAAAACATAAACTGGCGGtt  >  1:694484/2‑251 (MQ=255)
                                                                                                                                                                                                                              ttATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTAAGTGAAATGGCACTTGCGGGTTTTACCGGATGTGAAGTTGGAAATAAATATCCGCGCGATGTGGAAGTGTTAAAACATAAACTGGCGGtt  >  1:557516/2‑251 (MQ=255)
                                                                                                                                                                                                                              ttATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTAAGTGAAATGGCACTTGCGGGTTTTACCGGATGTGAAGTTGGAAATAAATATCCGCGCGATGTGGAAGTGTTAAAACATAAACTGGCGGtt  >  1:885391/2‑251 (MQ=255)
                                                                                                                                                                                                                              ttATTAATCCGTCATTTAATTTATT‑TCCCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTAAGTGAAATGGCACTTGCGGGTTTTACCGGATGTGAAGTTGGAAATAAATATCCGCGCGATGTGGAAGTGTTAAAACATAAACTGGCGGtt  >  1:518567/2‑251 (MQ=255)
                                                                                                                                                                                                                               tATTAATCCGTCATTTAATTTATT‑TCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTAAGTGAAATGGCACTTGCGGGTTTTACCGGATGTGAAGTTGGAAATAAATATCCGCGCGATGTGGAAGTGTTAAAACATAAACTGGCGGtt  >  1:378663/1‑250 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                           
TTGTAAAACCTATAAAGTCACCACTGAAGAGGAATTACGCGCCGCCCTTGCCGATGCGAAAAAACAAACCGTCTCTACGTTGATTGACATAAAAGTCTTGCCAAAAACCATGATTCACGGCTACGGCAGCTGGTGGCACGTTGGCGTAGCAGAAGTGTCGGAAAAAGAAAAAATCCGCAAAGCGCATAAAAGCAGCGTGAAACACATTAACGAAGCAAGACGCTATTAATCCG‑‑ATTCAATTTATTATCTCCAATTTAACCACTCTGTTGAGAAGGAAAACACTATGAAAGCTGAAAACGTGAAATTAGGTATCGCGCCAATCGGTTGGACTAACGATGATATGCCTGATCTTGGCAAAGAGAATACCTTTGAACAATGTGTCAGTGAAATGGCACTTGCGGGTTTTACCGGATGTGAAGTTGGAAATAAATATCCGCGCGACGTGGACGTGTTAAAACATAAGCTGGCGGTT  >  1/1972857‑1973328

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑