Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,921,045	G→A	intergenic (‑504/+35)	unknown ← / ← unknown	Leucine‑responsive regulatory protein, regulator for leucine (or lrp) regulon and high‑affinity branched‑chain amino acid transport system/DNA repair protein RadA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,921,045	0	G	A	100.0%	243.7 / NA	80	intergenic (‑504/+35)	unknown/unknown	Leucine‑responsive regulatory protein, regulator for leucine (or lrp) regulon and high‑affinity branched‑chain amino acid transport system/DNA repair protein RadA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (34/46);  total (34/46)

CGCTCAAACAAAAGAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGGCGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGACCGCTTGGTACGGGGCGGATTTCGCCTGCCAAGCCCACTTCGCCGAAGATCACTAAAT  >  1/1920812‑1921285                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                 cGCTCAAACAAAAGAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGaa                                                                                                                                                                                                                                   >  1:901464/1‑249 (MQ=255) cGCTCAAACAAAAGAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGaa                                                                                                                                                                                                                                   >  1:492070/1‑249 (MQ=255) cGCTCAAACAAAAGAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTACTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGaa                                                                                                                                                                                                                                   >  1:137384/1‑249 (MQ=255)          aaaaGAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGa                                                                                                                                                                                                                        <  1:697791/251‑1 (MQ=255)                         aaaaaTTAACGCACGTTCGGGCAATTTATACGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAAc                                                                                                                                                                                                         <  1:638971/251‑1 (MQ=255)                         aaaaaTTAACGCACGTTCGGGCAATTTATACGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAAc                                                                                                                                                                                                         <  1:350244/251‑1 (MQ=255)                              ttAACGCACGTTCGGGCAATTTATACGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGa                                                                                                                                                                                                                        <  1:698999/231‑1 (MQ=255)                                  cGCACGTTCGGGCAATTTATACGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAac                                                                                                                                                                                                <  1:408519/251‑1 (MQ=255)                                     aCGTTCGGGCAATTTATACGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACAcc                                                                                                                                                                                             <  1:420640/251‑1 (MQ=255)                                     aCGTTCGGGCAATTTATACGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACAcc                                                                                                                                                                                             <  1:388510/251‑1 (MQ=255)                                          cGGGCAATTTATACGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAAt                                                                                                                                                                                        <  1:391257/251‑1 (MQ=255)                                                aTTTATACGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAAccc                                                                                                                                                                                                                   >  1:568173/1‑218 (MQ=255)                                                aTTTATACGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAAc                                                                                                                                                                                                         <  1:881070/228‑1 (MQ=255)                                                aTTTATACGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCAt                                                                                                                                                                                   >  1:760622/1‑250 (MQ=255)                                                   tataCGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCAc                                                                                                                                                                                >  1:348118/1‑250 (MQ=255)                                                    ataCGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCt                                                                                                                                                                              <  1:814435/251‑1 (MQ=255)                                                       cGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAAc                                                                                                                                                                                                                                  <  1:224275/196‑1 (MQ=255)                                                       cGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAAc                                                                                                                                                                           <  1:228169/251‑1 (MQ=255)                                                           gACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTc                                                                                                                                                                        <  1:482509/250‑1 (MQ=255)                                                           gACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTc                                                                                                                                                                        >  1:418955/1‑250 (MQ=255)                                                               ccGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAAc                                                                                                                                                                                                         <  1:310302/213‑1 (MQ=255)                                                               ccGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTccgtac                                                                                                                                                                   <  1:379473/251‑1 (MQ=255)                                                                 gTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAAt                                                                                                                                                                                        <  1:156247/228‑1 (MQ=255)                                                                        cGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAacac                                                                                                                                                          <  1:201148/251‑1 (MQ=255)                                                                        cGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAaca                                                                                                                                                           <  1:622111/250‑1 (MQ=255)                                                                        cGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAac                                                                                                                                                            <  1:524584/249‑1 (MQ=255)                                                                                  aaaGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATtc                                                                                                                                                <  1:831193/251‑1 (MQ=255)                                                                                     gTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATtctc                                                                                                                                              >  1:416858/1‑250 (MQ=255)                                                                                        cGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCAc                                                                                                                                           <  1:662088/250‑1 (MQ=255)                                                                                          gtgtATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAac                                                                                                                                                            >  1:790557/1‑231 (MQ=255)                                                                                          gtgtATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACttt                                                                                                                                        >  1:421296/1‑251 (MQ=255)                                                                                          gtgtATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACttt                                                                                                                                        >  1:537390/1‑251 (MQ=255)                                                                                            gtATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACt                                                                                                                                                                          <  1:261031/215‑1 (MQ=255)                                                                                            gtATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTAt                                                                                                                                      >  1:681171/1‑251 (MQ=255)                                                                                            gtATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGGTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTAt                                                                                                                                      >  1:739517/1‑251 (MQ=255)                                                                                              aTTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTTGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGt                                                                                                                                    <  1:439084/251‑1 (MQ=255)                                                                                              aTTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGt                                                                                                                                    >  1:10545/1‑251 (MQ=255)                                                                                              aTTTTAGATTTGTTTTTTAAGCTGAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAacac                                                                                                                                                                                              <  1:442375/193‑1 (MQ=255)                                                                                                                  gCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCAc                                                                                                                                           <  1:201534/224‑1 (MQ=255)                                                                                                                   cTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTcc                                                                                                                                             <  1:446924/221‑1 (MQ=255)                                                                                                                           cAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATgg                                                                                                        >  1:275032/1‑250 (MQ=255)                                                                                                                              gTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATtc                                                                                                                                                <  1:338615/207‑1 (MQ=255)                                                                                                                                ggAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATtc                                                                                                                                                <  1:804757/205‑1 (MQ=255)                                                                                                                                ggAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATtc                                                                                                                                                >  1:493769/1‑205 (MQ=255)                                                                                                                                ggAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGtt                                                                                                  >  1:551928/1‑251 (MQ=255)                                                                                                                                  aaaaTACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCt                                                                                                                                                                                            >  1:883887/1‑159 (MQ=255)                                                                                                                                     aTACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGt                                                                                                                                    <  1:715173/212‑1 (MQ=255)                                                                                                                                     aTACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAg                                                                                             >  1:821067/1‑251 (MQ=255)                                                                                                                                       acacCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTc                                                                                                                                                                        >  1:751112/1‑174 (MQ=255)                                                                                                                                       acacCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGc                                                                                            >  1:116134/1‑250 (MQ=255)                                                                                                                                             cacTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCat                                                                                                                                                    >  1:780306/1‑188 (MQ=255)                                                                                                                                             cacTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGttt                                                                                     >  1:166812/1‑251 (MQ=255)                                                                                                                                               cTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGtt                                                                                                                                   >  1:627589/1‑203 (MQ=255)                                                                                                                                                  tAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAg                                                                                <  1:773387/251‑1 (MQ=255)                                                                                                                                                             aaaTAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGAt                                                                      <  1:800765/250‑1 (MQ=255)                                                                                                                                                               aTAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTcc                                                                                                                                             <  1:109965/177‑1 (MQ=255)                                                                                                                                                                tAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAAc                                                                                                                                                                                                                                  >  1:765114/1‑91 (MQ=255)                                                                                                                                                                 aaagaaagGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATgg                                                                                                        >  1:47142/1‑212 (MQ=255)                                                                                                                                                                       agGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGa                                                            >  1:415660/1‑250 (MQ=255)                                                                                                                                                                         gTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACg                                                                   >  1:440624/1‑241 (MQ=255)                                                                                                                                                                         gTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATGCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGAc                                                           <  1:243989/249‑1 (MQ=255)                                                                                                                                                                                 gagaAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGACCGCTTGGTa                                                  <  1:250506/250‑1 (MQ=255)                                                                                                                                                                                  agaaagaaTAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGACCGCTTGGTAc                                                 <  1:650615/250‑1 (MQ=255)                                                                                                                                                                                  agaaagaaTAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGACCGCTTGGTAc                                                 <  1:303399/250‑1 (MQ=255)                                                                                                                                                                                        aataatTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGACCGCTTGGTACGGGGc                                            <  1:232426/249‑1 (MQ=255)                                                                                                                                                                                            atTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACg                                                                   >  1:244217/1‑222 (MQ=255)                                                                                                                                                                                               cccccGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGACCGCTTGGTACGGGGCGGATTTCg                                    >  1:605152/1‑250 (MQ=255)                                                                                                                                                                                                   cGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGACCGCTTGGTACGGGGCGGATTTCGCCTg                                >  1:480957/1‑250 (MQ=255)                                                                                                                                                                                                            cgcCTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGACCGCTTGGTACGGGGCGGATTTCGCCTGCCAAGCCCAc                      <  1:721369/251‑1 (MQ=255)                                                                                                                                                                                                              ccTTTCTTTTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGACCGCTTGGTACGGGGc                                            <  1:883886/227‑1 (MQ=255)                                                                                                                                                                                                                  tctttTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGACCGCTTGGTACGGGGCGGATTTCGCCTGCCAAGCCCACTTCGcc                <  1:272501/251‑1 (MQ=255)                                                                                                                                                                                                                   ctttTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATa                                                                     <  1:463153/197‑1 (MQ=255)                                                                                                                                                                                                                   ctttTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGtt                                                                 >  1:649268/1‑201 (MQ=255)                                                                                                                                                                                                                   ctttTGGTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATG‑TTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGACCGCTTGGTACGGGGCGGATTTCGCCTGCCAAGCCCACTTCGCCGa              <  1:505282/251‑1 (MQ=255)                                                                                                                                                                                                                        ggTTCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGACCGCTTGGTAc                                                 <  1:886558/212‑1 (MQ=255)                                                                                                                                                                                                                           tCATTCTCTTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGACCGCTTGGTACGGGGCGGATTTCGCCTGCCAAGCCCACTTCGCCGAAGATCa        >  1:271909/1‑250 (MQ=255)                                                                                                                                                                                                                                ctctTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCGCCTAACATCCGTACCGTAAACACTTCCATATACTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGACCGCTTGGTACGGGGCGGATTTCGCCTGCCAAGCCCACTTCGCCGAAGATCACTAAAt  <  1:871884/251‑1 (MQ=255)                                                                                                                                                                                                                                ctctTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGACCGCTTGGTACGGGGCGGATTTCGCCTGCCAAGCCCACTTCGCCGAAGATCACTAAAt  >  1:783162/1‑251 (MQ=255)                                                                                                                                                                                                                                ctctTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGACCGCTTGGTACGGGGCGGATTTCGCCTGCCAAGCCCACTTCGCCGAAGATCACTAAAt  <  1:251064/251‑1 (MQ=255)                                                                                                                                                                                                                                  ctTTGGCGACGCAAAGAAAAGGAACTATCGGCTGAAGCCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAGCACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAgg                                                                                                                <  1:577881/139‑1 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                 CGCTCAAACAAAAGAAATTTTCCTAAAAATTAACGCACGTTCGGGCAATTTATACGGGGACCCCGTTGGAGCGTTATTTGAAAAGTGCGGTGTATTTTAGATTTGTTTTTTAAGCTTAAAAACAAGTGGAAAATACACCACACTTTAAGTTTTGCGAAATAAAGAAAGGTTATTCGGAGAAAGAATAATTCCCCCGTTTACGGCGCCTTTCTTTTGGTTCATTCTCTTTGGCGGCGCAAAGAAAAGGAACTATCGGCTGAAACCCAATTTAAAACCGATCCAACACCTCAATCGCATCACCTAACTTCCGTACCGTAAACACTTCCATATTCTCCACTTTATGTTTCGGTTTATTGCCAAAAGGCACGATGGCGCGTTTGAAGCCGTGTTTTGCAGCTTCGCTGATACGTTCCTGACCGCTTGGTACGGGGCGGATTTCGCCTGCCAAGCCCACTTCGCCGAAGATCACTAAAT  >  1/1920812‑1921285

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑