Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,803,557 T→C M128V (ATG→GTG)  unknown ← D‑glycero‑beta‑D‑manno‑heptose 1‑phosphate adenylyltransferase (EC 2.7.7.70) / D‑glycero‑beta‑D‑manno‑heptose‑7‑phosphate kinase (EC 2.7.1.167)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,803,5570TC100.0% 178.6 / NA 62M128V (ATG→GTG) unknownD‑glycero‑beta‑D‑manno‑heptose 1‑phosphate adenylyltransferase (EC 2.7.7.70) / D‑glycero‑beta‑D‑manno‑heptose‑7‑phosphate kinase (EC 2.7.1.167)
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (37/25);  total (37/25)

GAATGACATTTACCCACAACCGCTTCAAATTCGGACATATTCGGCGTTAATAAGGTCGCACCGCGATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCATGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCTTCATCCTGACCGGTTAAGCCCAGCAATTGCACCGGCACATTTAACGAAGCGATGTTCATTGCCACGTTTGCCGCACCGCCTGCACG  >  1/1803316‑1803794
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                             
gAATGACATTTACCCACAACCGCTTCAAATTCGGACATATTCGGCGTTAATAAGGTCGCACCGCGATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGaa                                                                                                                                                                                                                                      >  1:204663/1‑251 (MQ=255)
gAATGACATTTACCCACAACCGCTTCAAATTCGGACATATTCGGCGTTAATAAGGTCGCACCGCGATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGaa                                                                                                                                                                                                                                      >  1:834150/1‑251 (MQ=255)
gAATGACATTTACCCACAACCGCTTCAAATTCGGACATATTCGGCGTTAATAAGGTCGCACCGCGATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGaa                                                                                                                                                                                                                                      >  1:309859/1‑251 (MQ=255)
      cATTTACCCACAACCGCTTCAAATTCGGACATATTCGGCGTTAATAAGGTCGCACCGCGATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAAtctt                                                                                                                                                                                                                                 >  1:880170/1‑250 (MQ=255)
           aCCCACAACCGCTTCAAATTCGGACATATTCGGCGTTAATAAGGTCGCACCGCGATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCaa                                                                                                                                                                                                                           >  1:314827/1‑251 (MQ=255)
            cccACAACCGCTTCAAATTCGGACATATTCGGCGTTAATAAGGTCGCACCGCGATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCaaa                                                                                                                                                                                                                          >  1:1307/1‑251 (MQ=255)
            cccACAACCGCTTCAAATTCGGACATATTCGGCGTTAATAAGGTCGCACCGCGATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCaaa                                                                                                                                                                                                                          >  1:853376/1‑251 (MQ=255)
                      cTTCAAATTCGGACATATTCGGCGTTAATAAGGTCGCACCGCGATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCATAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGt                                                                                                                                                                                                                >  1:450529/1‑251 (MQ=255)
                         cAAATTCGGACATATTCGGCGTTAATAAGGTCGCACCGCGATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGtaat                                                                                                                                                                                                             <  1:874896/251‑1 (MQ=255)
                           aaTTCGGACATATTCGGCGTTAATAAGGTCGCACCGCGATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGtaataa                                                                                                                                                                                                           <  1:330119/251‑1 (MQ=255)
                                     tatTCGGCGTTAATAAGGTCGCACCGCGATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGtaataa                                                                                                                                                                                                           <  1:175201/241‑1 (MQ=255)
                                      atTCGGCGTTAATAAGGTCGCACCGCGATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATgg                                                                                                                                                                                                 >  1:635668/1‑250 (MQ=255)
                                           gCGTTAATAAGGTCGCACCGCGATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGa                                                                                                                                                                                            >  1:469006/1‑250 (MQ=255)
                                               taataaGGTCGCACCGCGATAGCGTTCAAAATCCGTCCCTTTCTGATCGATGATCACCGGCACATTGGCGTTACGGGCAATTTTTATCATTTTTTGTACTTCATTTATTGTGCCTTTGCCGTAATCGGACAAGTTCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGTCGGGACaaaa                                                                                                                                                                                       >  1:550778/1‑251 (MQ=255)
                                                            ccGCGATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAAttgt                                                                                                                                                                                                       >  1:332641/1‑222 (MQ=255)
                                                            ccGCGATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGt                                                                                                                                                                          >  1:304307/1‑251 (MQ=255)
                                                              gcgATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTaa                                                                                                                                                                        >  1:7667/1‑251 (MQ=255)
                                                               cgATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCAGTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTaa                                                                                                                                                                        <  1:4181/250‑1 (MQ=255)
                                                                      gTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCggg                                                                                                                                                                >  1:505133/1‑251 (MQ=255)
                                                                       ttCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTaa                                                                                                                                                                        >  1:160299/1‑242 (MQ=255)
                                                                       ttCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCgggt                                                                                                                                                               >  1:12147/1‑251 (MQ=255)
                                                                       ttCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCgggg                                                                                                                                                               >  1:648861/1‑250 (MQ=255)
                                                                       ttCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCggg                                                                                                                                                                <  1:672535/250‑1 (MQ=255)
                                                                                         cGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAGATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGa                                                                                                                                             <  1:582346/251‑1 (MQ=255)
                                                                                         cGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGa                                                                                                                                             <  1:252109/251‑1 (MQ=255)
                                                                                          ggATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGaa                                                                                                                                            >  1:837157/1‑251 (MQ=255)
                                                                                           gATCGATGAGCACCGGCTCATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGaa                                                                                                                                            <  1:613294/250‑1 (MQ=255)
                                                                                                          gCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTGCTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGAttttt                                                                                                                            >  1:468758/1‑251 (MQ=255)
                                                                                                            acaTTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGtaat                                                                                                                                                                                                             <  1:465263/168‑1 (MQ=255)
                                                                                                                     ttACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGtaa                                                                                                                 <  1:636692/251‑1 (MQ=255)
                                                                                                                       aCGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGtaata                                                                                                               <  1:500709/251‑1 (MQ=255)
                                                                                                                         gggCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTaataat                                                                                                             >  1:36702/1‑251 (MQ=255)
                                                                                                                          ggCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGAACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATg                                                                                                            >  1:454374/1‑251 (MQ=255)
                                                                                                                              aTTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATg                                                                                                            >  1:261652/1‑247 (MQ=255)
                                                                                                                                    aTCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAAcgc                                                                                                  <  1:202062/251‑1 (MQ=255)
                                                                                                                                    aTCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAAcgc                                                                                                  <  1:258221/251‑1 (MQ=255)
                                                                                                                                        ttttttGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGaa                                                                                                                                                                                                                                      >  1:796347/1‑115 (MQ=255)
                                                                                                                                        ttttttGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGtaataa                                                                                                              >  1:442178/1‑235 (MQ=255)
                                                                                                                                                   tCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGaa                                                                                                                                            >  1:881699/1‑194 (MQ=255)
                                                                                                                                                    cATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTaa                                                                                                                                                                        >  1:741857/1‑165 (MQ=255)
                                                                                                                                                    cATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCTTCATcc                                                                                  <  1:784493/251‑1 (MQ=255)
                                                                                                                                                    cATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCTTCATcc                                                                                  <  1:368941/251‑1 (MQ=255)
                                                                                                                                                    cATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGC‑AATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAAcgc                                                                                                  <  1:71097/234‑1 (MQ=255)
                                                                                                                                                             tgCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGGCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCTTCATCCTGACCGGtt                                                                         <  1:432493/251‑1 (MQ=255)
                                                                                                                                                                  ttGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCTTCATCCTGACCGGTTAAGcc                                                                    <  1:100487/251‑1 (MQ=255)
                                                                                                                                                                    gCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTC‑AAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGc                                                                                                                                                    >  1:484712/1‑168 (MQ=255)
                                                                                                                                                                    gCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTAACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCTTCATCCTGACCGGTTAAGCCCa                                                                  >  1:367478/1‑251 (MQ=255)
                                                                                                                                                                     ccGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCTTCATCCTGACCGGTTAAGCCCAg                                                                 >  1:706127/1‑251 (MQ=255)
                                                                                                                                                                       gTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAAttgttg                                                                                                                                                                                                     >  1:751730/1‑117 (MQ=255)
                                                                                                                                                                        tAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCTTCATCCTGACCGGTTAAGCCCAGCaa                                                              <  1:803222/251‑1 (MQ=255)
                                                                                                                                                                               aCAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCTTCATCCTGACCGGTTAAGCCCAGCAATTGCAc                                                        <  1:77848/250‑1 (MQ=255)
                                                                                                                                                                                  aGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGtaataa                                                                                                              <  1:604571/193‑1 (MQ=255)
                                                                                                                                                                                   gATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAAt                                                                                                                                                                                                                                    >  1:274964/1‑74 (MQ=255)
                                                                                                                                                                                               gTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCTTCATCCTGACCGGTTAAGCCCAGCAATTGCACCGGCACATTTAACGag                                        >  1:492756/1‑249 (MQ=255)
                                                                                                                                                                                                             cACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCTTCATCCTGACCGGTTAAGCCCAGCAATTGCACCGGCACATTTAACGAAGCGATGTTCATTGc                          <  1:421536/250‑1 (MQ=255)
                                                                                                                                                                                                                 ttCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCtt                                                                                       <  1:901496/185‑1 (MQ=255)
                                                                                                                                                                                                                 ttCTAGTTTTTTCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCTTCATcc                                                                                  >  1:159254/1‑190 (MQ=255)
                                                                                                                                                                                                                          tttCAGCAAATCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCTTCATCCTGACCGGTTAAGCCCAGCAATTGCACCGGCACATTTAACGAAGCGATGTTCATTGCCACGTTTGCCGCAc            <  1:669001/251‑1 (MQ=255)
                                                                                                                                                                                                                                  aaTCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCTTCATCCTGACCGGTTAAGCCCAGCAATTGCACCGGCACATTTAACg                                          >  1:287788/1‑213 (MQ=255)
                                                                                                                                                                                                                                   aTCCGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCTTCATCCTGACCGGTTAAGCCCAGCAATTGCACCGGCACATTTAACGAAGCGATGTTCATTGCCACg                      >  1:659094/1‑232 (MQ=255)
                                                                                                                                                                                                                                     ccGCACTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCTTCATCCTGACCGGTTAAGCCCAGCAATTGCACCGGCACATTTAACGAAGCGATGTTCATTGCCACGTTTGCCGCACCGCCTGCACg  >  1:72940/1‑250 (MQ=255)
                                                                                                                                                                                                                                          cTTGTCACGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCTTCATCCTGACCGGTTAAGccc                                                                   <  1:536690/180‑1 (MQ=255)
                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                             
GAATGACATTTACCCACAACCGCTTCAAATTCGGACATATTCGGCGTTAATAAGGTCGCACCGCGATAGCGTTCAAAATCCGTCCCTTTCGGATCGATGAGCACCGGCACATTGGCGTTACGGGCAATTTGGATCATTTTTTGTACTTCATTTAATGTGCCTTTGCCGTAATCGGACAAGATCAAAGCGCCGTAATTTTTGACCGCACTTTCTAGTTTTTTCAGCAAATCCGCACTTGTCATGTTCTGGAAATCTTCTTCAAAATCAAGGCGTAATAATTGTTGATGGCGGGACAAAATACGCAATTTGGTAATTGTCGGGTGGGTAGCAAGCTGTACGAAGTCGCAAGCGATTTTTTGTTGTTGTAATAATGAGGTTAACGCCGCGCCCGCTTCATCCTGACCGGTTAAGCCCAGCAATTGCACCGGCACATTTAACGAAGCGATGTTCATTGCCACGTTTGCCGCACCGCCTGCACG  >  1/1803316‑1803794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑