| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,783,506 | T→C | G249G (GGT→GGC) | unknown → | Manganese ABC transporter, inner membrane permease protein SitC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,783,506 | 0 | T | C | 100.0% | 244.3 / NA | 83 | G249G (GGT→GGC) | unknown | Manganese ABC transporter, inner membrane permease protein SitC |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (47/36); total (47/36) | |||||||||||
TCCGTCGGCTTTTCACCGATTTACTACAAAATCCTGTTTTTCACCTTGCTCAGCGCCTGCGTGGTTGCCGCGTTACAAACCGTCGGTGCCATTTTGGTTATCGCCATGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGTGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTGCTATTTAGTGTTAAAAGGCTGGTCGTTAATG > 1/1783261‑1783751 | tCCGTCGGCTTTTCACCGATTTACTACAAAATCCTGTTTTTCACCTTGCTCAGCGCCTGCGTGGTTGCCGCGTTACAAACCGTCGGTGCCATTTTGGTTATCGCCATGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTAt > 1:881467/1‑251 (MQ=255) gCTTTTCACCGATTTACTACAAAATCCTGTTTTTCACCTTGCTCAGCGCCTGCGTGGTTGCCGCGTTACAAACCGTCGGTGCCATTTTGGTTATCGCCATGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTAttg > 1:116950/1‑246 (MQ=255) cTTTTCACCGATTTACTACAAAATCCTGTTTTTCACCTTGCTCAGCGCCTGCGTGGTTGCCGCGTTACAAACCGTCGGTGCCATTTTGGTTATCGCCATGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTAttgtttgt < 1:749778/250‑1 (MQ=255) ccGATTTACTACAAAATCCTGTTTTTCACCTTGCTCAGCGCCTGCGTGGTTGCCGCGTTACAAACCGTCGGTGCCATTTTGGTTATCGCCATGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGAc < 1:751127/251‑1 (MQ=255) ccGATTTACTACAAAATCCTGTTTTTCACCTTGCTCAGCGCCTGCGTGGTTGCCGCGTTACAAACCGTCGGTGCCATTTTGGTTATCGCCATGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGAc < 1:784789/251‑1 (MQ=255) gATTTACTACAAAATCCTGTTTTTCACCTTGCTCAGCGCCTGCGTGGTTGCCGCGTTACAAACCGTCGGTGCCATTTTGGTTATCGCCATGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCg > 1:278560/1‑251 (MQ=255) aTTTACTACAAAATCCTGTTTTTCACCTTGCTCAGCGCCTGCGTGGTTGCCGCGTTACAAACCGTCGGCGCCATTTTGGTTATCGCCATGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGCATTCAGACCg > 1:754853/1‑250 (MQ=255) ctacAAAATCCTGTTTTTCACCTTGCTCAGCGCCTGCGTGGTTGCCGCGTTACAAACCGTCGGTGCCATTTTGGTTATCGCCATGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCttt < 1:628348/251‑1 (MQ=255) acAAAATCCTGTTTTTCACCTTGCTCAGCGCCTGCGTGGTTGCCGCGTTACAAACCGTCGGTGCCATTTTGGTTATCGCCATGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCtttt > 1:664288/1‑250 (MQ=255) aTCCTGTTTTTCACCTTGCTCAGCGCCTGCGTGGTTGCCGCGTTACAAACCGTCGGTGCCATTTTGGTTATCGCCATGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTg > 1:623214/1‑249 (MQ=255) ttttCACCTTGCTCAGCGCCTGCGTGGTTGCCGCGTTACAAACCGTCGGTGCCATTTTGGTTATCGCCATGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGcatt > 1:353536/1‑250 (MQ=255) gCGTGGTTGCCGCGTTACAAACCGTCGGTGCCATTTTGGTTATCGCCATGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGt > 1:618172/1‑251 (MQ=255) ccGTCGGTGCCATTTTGGTTATCGCCATGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAAccc < 1:47553/251‑1 (MQ=255) ccATTTTGGTTATCGCCATGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAAcc < 1:868659/241‑1 (MQ=255) tttGGTTATCGCCATGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACaagaag < 1:855110/251‑1 (MQ=255) gTTATCGCCATGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCa > 1:265166/1‑224 (MQ=255) aTGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATg > 1:86802/1‑251 (MQ=255) tGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACaa > 1:219043/1‑233 (MQ=255) ggTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACaagaag > 1:515501/1‑236 (MQ=255) ggTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTg < 1:1183/241‑1 (MQ=255) ggTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGaa > 1:635621/1‑251 (MQ=255) ggTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGaa > 1:177890/1‑251 (MQ=255) gTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTc < 1:314688/168‑1 (MQ=255) gTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAgg < 1:725087/238‑1 (MQ=255) gTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGaa > 1:807240/1‑250 (MQ=255) gTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGaa > 1:194207/1‑250 (MQ=255) cacCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACaagaag < 1:46745/228‑1 (MQ=255) gggCGCGACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTAtt < 1:181889/142‑1 (MQ=255) gggCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTAt > 1:830118/1‑249 (MQ=255) gcgcAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCtt < 1:12700/250‑1 (MQ=255) tACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGAcc > 1:58802/1‑135 (MQ=255) aCCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAAc < 1:742614/251‑1 (MQ=255) gCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCttt > 1:751529/1‑251 (MQ=255) gCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCttt > 1:835356/1‑251 (MQ=255) cccGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGc < 1:170537/250‑1 (MQ=255) ttttAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACgg > 1:549600/1‑159 (MQ=255) ttttAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAAcc > 1:360275/1‑180 (MQ=255) cTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTc > 1:589908/1‑158 (MQ=255) gTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAAcgcg > 1:17045/1‑251 (MQ=255) tGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTAc < 1:489295/251‑1 (MQ=255) tGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTAc < 1:269926/251‑1 (MQ=255) gCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGc > 1:295955/1‑234 (MQ=255) gTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACcgcg > 1:13432/1‑248 (MQ=255) cATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTc < 1:500383/251‑1 (MQ=255) ttCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTtg < 1:220382/248‑1 (MQ=255) ttCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTtg < 1:286526/248‑1 (MQ=255) tCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATC‑ACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTa < 1:458521/251‑1 (MQ=255) ccGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTa > 1:566298/1‑251 (MQ=255) tttATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTcc < 1:537605/250‑1 (MQ=255) ttATATAAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGc < 1:660356/244‑1 (MQ=255) tatataAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTg < 1:891581/69‑1 (MQ=255) tatataAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGc > 1:746347/1‑243 (MQ=255) tatataAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTg > 1:482381/1‑250 (MQ=255) atataAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCttt > 1:275358/1‑189 (MQ=255) atataAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTAc > 1:486299/1‑210 (MQ=255) atataAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTg > 1:150943/1‑249 (MQ=255) atataAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTg > 1:270119/1‑249 (MQ=255) atataAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTg > 1:665076/1‑249 (MQ=255) atataAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTAAATTACCGCGCTGTTGGTGTc < 1:629803/225‑1 (MQ=255) tataAGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTGCTa < 1:29507/251‑1 (MQ=255) aaGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTGCTAttt < 1:648942/251‑1 (MQ=255) aGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTAc < 1:257171/205‑1 (MQ=255) aGCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTGCTATTTa > 1:229073/1‑251 (MQ=255) gCTATTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCt < 1:890312/181‑1 (MQ=255) aTTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTgg < 1:199238/212‑1 (MQ=255) aTTTCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTGCTATTTAgtgt > 1:482407/1‑251 (MQ=255) ttCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTAcc > 1:279729/1‑174 (MQ=255) ttCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGc > 1:751866/1‑231 (MQ=255) ttCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGc < 1:229517/231‑1 (MQ=255) ttCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTGCTAttt > 1:523858/1‑244 (MQ=255) ttCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTGCTATTTAGTGTTa > 1:29163/1‑251 (MQ=255) ttCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTGCTATTTAGTGTTa > 1:559035/1‑251 (MQ=255) ttCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTGCTATTTAGTGTTa > 1:837703/1‑251 (MQ=255) ttCTTAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAG‑ACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTGCCCTTTCa < 1:250729/179‑1 (MQ=255) ttCTTAGACGGTGCAACAGGTGGCATTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGtt < 1:338048/88‑1 (MQ=255) ttAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTGCTATTTAGTGTTaaaa < 1:786206/251‑1 (MQ=255) tAGACGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTGCTATTTAGTGTTAAAAg < 1:828177/251‑1 (MQ=255) aCGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTGCTATTTAGTGTTAAAAGGc < 1:751504/250‑1 (MQ=255) cGGTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAAtt > 1:828787/1‑189 (MQ=255) gTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTAc > 1:67986/1‑147 (MQ=255) gTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTAccc > 1:581398/1‑165 (MQ=255) gTGCAACAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTAc > 1:611802/1‑189 (MQ=255) aCAGGTGGCGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGc > 1:690620/1‑216 (MQ=255) ggtggcGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTGCTATTTAGTGTTAAAAGGCTGGTCGTTAATg > 1:730402/1‑251 (MQ=255) gtggcgTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTGCTATTTAGTGTTAAAAGGCTGGTCGTTAAt < 1:702155/249‑1 (MQ=255) | TCCGTCGGCTTTTCACCGATTTACTACAAAATCCTGTTTTTCACCTTGCTCAGCGCCTGCGTGGTTGCCGCGTTACAAACCGTCGGTGCCATTTTGGTTATCGCCATGGTTATCACACCGGGCGCAACCGCTTACCTGCTCACCGATCGTTTTAAAACTTTGGTCCTTATTGCCGTAGTTTTAGGCATTTCTTCCAGTTCCGTAGGCGTTTATATAAGCTATTTCTTAGACGGTGCAACAGGTGGTGTTATTGTTTGTATTCAGACCGCTCTTTTCTTGCTGGCATTCATTTTTTCACCGAAGTACGGTTTGCTCCATCAACATAAACCCATCGCACAAGAAGAGGTGCAAAAATGAACGCCATTTATCTTTGGATTACCGAACCTTTCAGCTACCCTTTCATGCAAAACGCGTTAATTACCGCGCTGTTGGTGTCCGTTATTTGTGCTATGCTGTCCTGCTATTTAGTGTTAAAAGGCTGGTCGTTAATG > 1/1783261‑1783751 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |