Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,568,288	G→T	Q55K (CAA→AAA)	unknown ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,568,288	0	G	T	100.0%	159.9 / NA	54	Q55K (CAA→AAA)	unknown	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (27/27);  total (27/27)

GATAAAGACTTACCTTTATCTAACTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTGTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATACACGAAGCTAGGCTAGCATAAACAAATTACCCACATAGGTAAATAC  >  1/1568068‑1568532                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                     gaTAAAGACTTACCTTTATCTAATTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTaa                                                                                                                                                                                                                        >  1:808591/1‑251 (MQ=255)          ttACCTTTATCTAATTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCtcttc                                                                                                                                                                                                               <  1:362263/251‑1 (MQ=255)            aCCTTTATCTAATTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTcttctt                                                                                                                                                                                                             >  1:526310/1‑251 (MQ=255)             ccTTTATCTAATTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCttcttt                                                                                                                                                                                                            >  1:250281/1‑251 (MQ=255)                  aTCTAATTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCtttt                                                                                                                                                                                                       >  1:325581/1‑251 (MQ=255)                  aTCTAATTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCtttt                                                                                                                                                                                                       >  1:864991/1‑251 (MQ=255)                  aTCTAATTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCtttt                                                                                                                                                                                                       >  1:112820/1‑251 (MQ=255)                      aattgtgCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGt                                                                                                                                                                                                   >  1:866547/4‑251 (MQ=255)                      aattgtgCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGt                                                                                                                                                                                                   >  1:476179/4‑251 (MQ=255)                          gtgCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACg                                                                                                                                                                                               >  1:206792/1‑251 (MQ=255)                                                  ggCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATa                                                                                                                                                                       >  1:868500/2‑251 (MQ=255)                                                   gCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCt                                                                                                                                                                                                                                  <  1:839475/191‑1 (MQ=255)                                                   gCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTaaaa                                                                                                                                                                                                                      >  1:608902/1‑203 (MQ=255)                                                   gCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAAt                                                                                                                                                                                                                     <  1:140416/204‑1 (MQ=255)                                                   gCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATa                                                                                                                                                                       >  1:223834/1‑250 (MQ=255)                                                   gCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATa                                                                                                                                                                       >  1:528744/1‑250 (MQ=255)                                                   gCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATa                                                                                                                                                                       >  1:710179/1‑250 (MQ=255)                                                             gTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAACTACTTTCAAg                                                                                                                                                               >  1:94386/1‑248 (MQ=255)                                                             gTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAg                                                                                                                                                               >  1:830501/1‑248 (MQ=255)                                                                    ttttCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTaa                                                                                                                                                      <  1:718659/250‑1 (MQ=255)                                                                           tACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAAt                                                                                                                                              <  1:647923/251‑1 (MQ=255)                                                                                 cTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTGAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGc                                                                                                                                                              >  1:429968/1‑229 (MQ=255)                                                                                 cTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGc                                                                                                                                                   <  1:564640/240‑1 (MQ=255)                                                                                     tcatcaACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGAc                                                                                                                                    <  1:1513/251‑1 (MQ=255)                                                                                            cATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGc                                                                                                                             <  1:648568/251‑1 (MQ=255)                                                                                                      ttttGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGaa                                                                                                                   <  1:23556/251‑1 (MQ=255)                                                                                                       tttGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAat                                                                                                                  >  1:122299/1‑251 (MQ=255)                                                                                                         tGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAatat                                                                                                                <  1:584667/251‑1 (MQ=255)                                                                                                         tGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATGTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAatat                                                                                                                <  1:381271/251‑1 (MQ=255)                                                                                                                 gAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGc                                                                                                                         <  1:192498/234‑1 (MQ=255)                                                                                                                      tctcTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTAGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGTCTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCAcgcg                                                                                                                                        <  1:123706/214‑1 (MQ=255)                                                                                                                         ctTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAat                                                                                                                  <  1:825230/233‑1 (MQ=255)                                                                                                                          ttttCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAAt                                                                                               <  1:898522/251‑1 (MQ=255)                                                                                                                              cTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATg                                                                                                                                                    >  1:541802/1‑194 (MQ=255)                                                                                                                                               aaCCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAAtttt                                                                            >  1:712476/1‑249 (MQ=255)                                                                                                                                                aCCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACttt                                                                                                                                                                   >  1:865028/1‑161 (MQ=255)                                                                                                                                                        tctcTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGac                                                                 <  1:779775/251‑1 (MQ=255)                                                                                                                                                           ctGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAat                                                                                                                  >  1:849545/1‑199 (MQ=255)                                                                                                                                                                  ttCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGc                                                                                                                                                   <  1:172322/159‑1 (MQ=255)                                                                                                                                                                    cGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGc                                                                                                                                                                                                                                   <  1:600029/77‑1 (MQ=255)                                                                                                                                                                    cGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGc                                                                                                                         <  1:563925/183‑1 (MQ=255)                                                                                                                                                                             tGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATTCGCAAGCTACTAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATacac                                             <  1:95386/250‑1 (MQ=255)                                                                                                                                                                                   cttcttGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCgg                                                                                        >  1:533626/1‑201 (MQ=255)                                                                                                                                                                                   cttcttGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAAtt                                                                              <  1:91434/211‑1 (MQ=255)                                                                                                                                                                                    ttcttGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAata                                                                                                                 <  1:851415/175‑1 (MQ=255)                                                                                                                                                                                             taataaTTCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGc                                                                                                                                                              >  1:175535/1‑121 (MQ=255)                                                                                                                                                                                                   ttCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATacac                                             <  1:194416/228‑1 (MQ=255)                                                                                                                                                                                                    tCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAat                                                                                                                  >  1:305204/1‑158 (MQ=255)                                                                                                                                                                                                    tCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAAt                                                                                               <  1:424277/177‑1 (MQ=255)                                                                                                                                                                                                    tCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATACACGAAGCTAGGCTATCATAAACAAAt                     >  1:499051/1‑251 (MQ=255)                                                                                                                                                                                                    tCTTTATATTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATACACGAAGCTAGGCTATCATAAACAAAt                     >  1:458312/1‑251 (MQ=255)                                                                                                                                                                                                           atTTGGCAATACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATACACGAAGCTAGGCTATCATAAACAAATTACCcac              <  1:251114/251‑1 (MQ=255)                                                                                                                                                                                                                   aTACGTTCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATACACGAAGCTAGGCTATCATAAACAAATTACCCACATAGGTaa      <  1:880271/251‑1 (MQ=255)                                                                                                                                                                                                                        ttCTTTTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATACACGAAGCTAGGCTATCATAAACAAATTACCCACATAGGTAAATAc  <  1:559548/250‑1 (MQ=255)                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                     GATAAAGACTTACCTTTATCTAACTGTGCTTGGATTGCTTTCGGTGTTCTGCCTTGACCTGTCCAAGTTTTCGTTACGCCCTTTTCATCAACATATTGATATTTTGCAGGACGAGTATCTCTTTTCTTACGAACCGCATCAGAACCTAAAATCTCTGCTAATTCGTCTGCAGTGATACCTTCTTGCTTTAATAATTCTTTATATTTGGCAATACGTTCTTGTCGCTCGTTTTCTTCTTGCTGAGCCTTTAAAATCTCTTCTTTCTTTTCCGTAACGACTAATTGCAATTTTTCCAAAATACTTTCAAGCTGTTCTAATGCTAAATCACGCGCGACCATACGCAAGCTACGAATATTCGTTAATATTTTTAATACATCGGACATTAAATTTTCTCCTCTAGACACAATTAAATTAATATACACGAAGCTAGGCTAGCATAAACAAATTACCCACATAGGTAAATAC  >  1/1568068‑1568532

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑