| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,559,413 | T→C | I560V (ATA→GTA) | unknown ← | Phosphoglycerate transport system sensor protein PgtB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,559,413 | 0 | T | C | 100.0% | 245.9 / NA | 79 | I560V (ATA→GTA) | unknown | Phosphoglycerate transport system sensor protein PgtB |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (41/38); total (41/38) | |||||||||||
GTTTCCTTGACATTGTTGCATAATGGATAGACTTATTGATAATCCTAAGCCTAAATTAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATATTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATACACATCAATAAATTAATTTTCTGTAATGTATTTGTGGTTTGGCGGGAAAAATGGCGCAGTCTTTTCACCACCAGCGCCGTACGCTCCACTAAATTTTCTATTTTCTCTAAATAGT > 1/1559180‑1559640 | gTTTCCTTGACATTGTTGCATAATGGATAGACTTATTGATAATCCTAAGCCTAAATTAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAAttt > 1:790703/1‑251 (MQ=255) tgttgCATAATGGATAGACTTATTGATAATCCTAAGCCTAAATTAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATAc < 1:329450/251‑1 (MQ=255) aTAATGGATAGACTTATTGATAATCCTAAGCCTAAATTAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAgg > 1:537109/1‑251 (MQ=255) tGGATAGACTTATTGATAATCCTAAGCCTAAATTAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTaaa > 1:597795/1‑251 (MQ=255) ggATAGACTTATTGATAATCCTAAGCCTAAATTAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGc < 1:640240/214‑1 (MQ=255) ggATAGACTTATTGATAATCCTAAGCCTAAATTAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAAt > 1:610717/1‑251 (MQ=255) aTAGACTTATTGATAATCCTAAGCCTAAATTAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATc < 1:549327/250‑1 (MQ=255) aTAGACTTATTGATAATCCTAAGCCTAAATTAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATc < 1:773502/250‑1 (MQ=255) gATAATCCTAAGCCTAAATTAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATAc > 1:167030/1‑227 (MQ=255) gATAATCCTAAGCCTAAATTAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAgaga > 1:467098/1‑251 (MQ=255) aTAATCCTAAGCCTAAATTAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATAc > 1:820915/1‑226 (MQ=255) aTCCTAAGCCTAAATTAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATaa > 1:240768/1‑250 (MQ=255) aTCCTAAGCCTAAATTAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATaa > 1:761726/1‑250 (MQ=255) tCCTAAGCCTAAATTAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAAc > 1:228256/1‑250 (MQ=255) gCCTAAATTAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATAc < 1:517741/216‑1 (MQ=255) gCCTAAATTAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATc > 1:493284/1‑228 (MQ=255) ttAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCg < 1:183987/239‑1 (MQ=255) aTGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATAttt < 1:2283/251‑1 (MQ=255) ggATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATAc < 1:614342/204‑1 (MQ=255) gATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAAc < 1:831347/231‑1 (MQ=255) gATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTAt < 1:301004/250‑1 (MQ=255) gATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATg > 1:203167/1‑251 (MQ=255) aTTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGt > 1:294489/1‑251 (MQ=255) ctactGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTgg > 1:871769/1‑251 (MQ=255) ctGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCt > 1:569344/1‑250 (MQ=255) gagaAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATAc < 1:267217/191‑1 (MQ=255) aGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAgg > 1:683399/1‑204 (MQ=255) ttGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATcc < 1:294710/250‑1 (MQ=255) gtagtaATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGAt < 1:656177/206‑1 (MQ=255) gtagtaATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCGCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGt < 1:433029/230‑1 (MQ=255) aTTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCatta < 1:171198/251‑1 (MQ=255) tttATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGt > 1:670505/1‑223 (MQ=255) aTCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCAttattta < 1:361926/251‑1 (MQ=255) tGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATTTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATac < 1:449364/251‑1 (MQ=255) tGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATac < 1:347197/251‑1 (MQ=255) gACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATac < 1:575646/250‑1 (MQ=255) aCAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATaca < 1:472408/250‑1 (MQ=255) cGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGctc > 1:23656/1‑138 (MQ=255) ggCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCg < 1:410449/191‑1 (MQ=255) ccGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATcc > 1:439908/1‑222 (MQ=255) ccATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATac > 1:673854/1‑232 (MQ=255) cATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAg < 1:8904/165‑1 (MQ=255) aaaCCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATACACATCAATAAATTAATTTTCTGTAATGt < 1:874735/250‑1 (MQ=255) aCCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGat > 1:516597/1‑178 (MQ=255) cccATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTTTCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAAt > 1:41809/1‑121 (MQ=255) cccATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATAc < 1:6275/136‑1 (MQ=255) cccATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATcc > 1:827456/1‑203 (MQ=255) cccATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGc < 1:68853/208‑1 (MQ=255) aTAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATGCATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATACACATCAATAAATTAATTTTCTGTAATGTATTtgtg < 1:143368/251‑1 (MQ=255) tAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATcc > 1:662852/1‑199 (MQ=255) aTTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATc > 1:883436/1‑142 (MQ=255) aTTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGa > 1:602039/1‑149 (MQ=255) aTTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCt < 1:639797/186‑1 (MQ=255) ttCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACa < 1:718846/130‑1 (MQ=255) cTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATcc > 1:339478/1‑194 (MQ=255) tctctGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATAc > 1:754744/1‑123 (MQ=255) ctctGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCg > 1:709355/1‑152 (MQ=255) ctGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATACACATCAATAaattaa < 1:829073/218‑1 (MQ=255) ctGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATACACATCAATAAATTAATTTTCTGTAATGTATTTGTGGTTTGGCGGGaaa < 1:705316/251‑1 (MQ=255) gATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATAc < 1:561642/118‑1 (MQ=255) aTCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATac > 1:212646/1‑200 (MQ=255) ccGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATc > 1:359372/1‑118 (MQ=255) gATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGGGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATc > 1:749836/1‑125 (MQ=255) atatatTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCg > 1:3723/1‑142 (MQ=255) atatatTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATACACATCAATAAATTAATTTTCTGTAATGTATTTGTGGTTTGGCGGGAAAAATGgcg < 1:754381/250‑1 (MQ=255) aTTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCAttattta > 1:154322/1‑181 (MQ=255) aTTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATACACATCAATAAATTAATTTTCTGTAATGTATTTGTGGTTTGGCGGGAAAAATGGCGCAGTCTTTTcac < 1:765206/251‑1 (MQ=255) aTCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCAttattta < 1:606926/175‑1 (MQ=255) aTCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATac < 1:198537/172‑1 (MQ=255) ttttCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCatta > 1:48312/1‑156 (MQ=255) tCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATACACATCAATAAATTAATTTTCTGTAATGTATTTGTGGTTTGGCGGGAAAAATGGCGCAGTCTTTTCACCACCAGCGCCGTACGCTCCACTaa < 1:151246/251‑1 (MQ=255) gcATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATaca < 1:123516/154‑1 (MQ=255) gcATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATACACATCAATAAATTAATTTTCTGt < 1:680120/176‑1 (MQ=255) gCTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATaca > 1:810215/1‑149 (MQ=255) cTTCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATACACATc > 1:577371/1‑152 (MQ=255) tCCAGTGAGTTCAGGAAAATATTCACAAATACTTGCCCTAATAAAATTTCATCACCTAATACATCAGGCAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATac > 1:441331/1‑145 (MQ=255) ccAGTGAGTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATACACATCAATAAATTAATTTTCTGTAATGTATTTGTGGTTTGGCGGGAAAAATGGCGCAGTCTTTTCACCACCAGCGCCGTACGCTCCACTAAattctctattttct > 1:741862/1‑249 (MQ=255) gTTCAGGAAAATATTCACAAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATACACATCAATAAATTAATTTTCTGTAATGTATTTGTGGTTTGGCGGGAAAAATGGCGCAGTCTTTTCACCACCAGCGCCGTACGCTCCACTAAATTTTCTATTTTCTCTAAATAGt > 1:60215/1‑251 (MQ=255) cacaAATACTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATACACATCAATAAATTAATTTTCTGTAATGTATTTGTGGTTTGGCGGGAAAAATGGCGCAGTCTTTTCACCACCAGCGCCGTACGCTCCACTAAat > 1:765437/1‑215 (MQ=255) | GTTTCCTTGACATTGTTGCATAATGGATAGACTTATTGATAATCCTAAGCCTAAATTAATGGATTTACTACTGGAGAAAGGTTGTAGTAATTTATCTGACAACGGCCAACCGGAACCATTATCAGAAACCCATAATTCTACTCTCTGATCCGATATATTTTGTATTTTTATCTCAATCTCCGGTTTTTCATGCTGCATAGCTTCCAGTGAGTTCAGGAAAATATTCACAAATATTTGCTCTAATAAAATTTCATCACCTAATACATCAGGTAAATCTGTAGGAAGAGATAACCGAGCATTCAGATATTTATGTTTTGGCTCAAGTAAATCCCACGCATTATTTATACACATCAATAAATTAATTTTCTGTAATGTATTTGTGGTTTGGCGGGAAAAATGGCGCAGTCTTTTCACCACCAGCGCCGTACGCTCCACTAAATTTTCTATTTTCTCTAAATAGT > 1/1559180‑1559640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |