| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,522,692 | C→T | intergenic (+23/+84) | unknown → / ← unknown | Autoinducer 2 (AI‑2) kinase LsrK (EC 2.7.1.‑)/Dethiobiotin synthase BioD (EC 6.3.3.3) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,522,692 | 0 | C | T | 100.0% | 190.5 / NA | 66 | intergenic (+23/+84) | unknown/unknown | Autoinducer 2 (AI‑2) kinase LsrK (EC 2.7.1.‑)/Dethiobiotin synthase BioD (EC 6.3.3.3) |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (37/29); total (37/29) | |||||||||||
TGTCAAAGAAGCTACAGCGCTGGGTTGTGCCATTGCCGCAGGCGTCGGAGTCGGCATTTATCCGACCTTAGCCGAGGCGGGGAAAAAACTGGTTAAATTTGAACGGCAACATCAACCGAATCCCGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAACGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCACCCAGCAGTGGCGCATCGACTTTTTGTTTTAGGGTTTCGATCACTTCGGCATAATGTCC > 1/1522447‑1522934 | tGTCAAAGAAGCTACAGCGCTGGGTTGTGCCATTGCCGCAGGCGTCGGAGTCGGCATTTATCCGACCTTAGCCGAGGCGGGGAAAAAACTGGTTAAATTTGAACGGCAACATCAACCGAATCCCGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATaa > 1:678313/1‑251 (MQ=255) gcgcTGGGTTGTGCCATTGCCGCAGGCGTCGGAGTCGGCATTTATCCGACCTTAGCCGAGGCGGGGAAAAAACTGGTTAAATTTGAACGGCAACATCAACCGAATCCCGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAgggggg > 1:831482/1‑251 (MQ=255) ccGCAGGCGTCGGAGTCGGCATTTATCCGACCTTAGCCGAGGCGGGGAAAAAACTGGTTAAATTTGAACGGCAACATCAACCGAAACCCGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACAGGTTGATAGCGGATTAACTACTTCTTTGTAGAAAGCACCAGGGGCGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGAttttt > 1:336902/1‑251 (MQ=255) gAGTCGGCATTTATCCGACCTTAGCCGAGGCGGGGAAAAAACTGGTTAAATTTGAACGGCAACATCAACCGAATCCCGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGTGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATAc < 1:253458/250‑1 (MQ=255) gAGTCGGCATTTATCCGACCTTAGCCGAGGCGGGGAAAAAACTGGTTAAATTTGAACGGCAACATCAACCGAATCCCGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATAc < 1:292046/250‑1 (MQ=255) gCATTTATCCGACCTTAGCCGAGGCGGGGAAAAAACTGGTTAAATTTGAACGGCAACATCAACCGAATCCCGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑aaaa > 1:194914/1‑251 (MQ=255) gCATTTATCCGACCTTAGCCGAGGCGGGGAAAAAACTGGTTAAATTTGAACGGCAACATCAACCGAATCCCGATAACTATGCTTTATACCAAACTCACAAAGCACAAAGTGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTATGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑aaaa > 1:551592/1‑251 (MQ=255) tATCCGACCTTAGCCGAGGCGGGGAAAAAACTGGTTAAATTTGAACGGCAACATCAACCGAATCCCGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACAt > 1:33208/1‑251 (MQ=255) aTCCGACCTTAGCCGAGGCGGGGAAAAAACTGGTTAAATTTGAACGGCAACATCAACCGAATCCCGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACAt > 1:113542/1‑250 (MQ=255) aCCTTAGCCGAGGCGGGGAAAAAACTGGTTAAATTTGAACGGCAACATCAACCGAATCCCGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTaa > 1:538333/1‑251 (MQ=255) ccGAGGCGGGGAAAAAACTGGTTAAATTTGAACGGCAACATCAACCGAATCCCGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAAccc < 1:548765/249‑1 (MQ=255) ccGAGGCGGGGAAAAAACTGGTTAAATTTGAACGGCAACATCAACCGAATCCCGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAAccc < 1:822620/249‑1 (MQ=255) ccGAGGCGGGGAAAAAACTGGTTAAATTTGAACGGCAACATCAACCGAATCCCGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAAccc < 1:303988/249‑1 (MQ=255) gggAAAAAACTGGTTAAATTTGAACGGCAACATCAACCGAATCCCGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACttt > 1:471575/1‑251 (MQ=255) aaaaCTGGTTAAATTTGAACGGCAACATCAACCGAATCCCGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGc < 1:49085/251‑1 (MQ=255) aaaCTGGTTAAATTTGAACGGCAACATCAACCGAATCCCGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGcc < 1:623085/251‑1 (MQ=255) cccGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATaaaaaaa < 1:752215/135‑1 (MQ=255) cGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGt > 1:883743/1‑250 (MQ=255) aTAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCgg < 1:216197/251‑1 (MQ=255) tAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATAc > 1:676631/1‑171 (MQ=255) tAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGc < 1:626221/209‑1 (MQ=255) aaCTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAg > 1:788774/1‑236 (MQ=255) gCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATAc < 1:644904/164‑1 (MQ=255) gCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACg > 1:530948/1‑225 (MQ=255) gCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGaaa > 1:646200/1‑251 (MQ=255) ataCCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCg > 1:828806/1‑237 (MQ=255) ataCCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACgg > 1:250689/1‑249 (MQ=255) cTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATc < 1:23847/249‑1 (MQ=255) gCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGttcttc > 1:553954/1‑250 (MQ=255) gggCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAAc < 1:597431/146‑1 (MQ=255) gATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAata > 1:6660/1‑251 (MQ=255) tttATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAg < 1:268347/193‑1 (MQ=255) tttATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAg < 1:271968/251‑1 (MQ=255) aaaaaaCAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAAcc < 1:371186/251‑1 (MQ=255) cAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTc < 1:332652/163‑1 (MQ=255) cAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCAccc < 1:552292/251‑1 (MQ=255) cAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCAcc > 1:838170/1‑250 (MQ=255) cAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCAcc > 1:27116/1‑250 (MQ=255) cAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCAcc > 1:630810/1‑250 (MQ=255) aCTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGt < 1:716658/170‑1 (MQ=255) tGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCACCCAGCAGTGgcg < 1:252146/251‑1 (MQ=255) gTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGaa > 1:174187/1‑222 (MQ=255) aTAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGATGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCACCcagcag < 1:772317/240‑1 (MQ=255) aTTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATc > 1:643981/1‑191 (MQ=255) ttAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTtgtg > 1:814116/1‑208 (MQ=255) aaCTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACttt > 1:412656/1‑123 (MQ=255) aaCTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATc > 1:184798/1‑188 (MQ=255) tcttTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAAc < 1:698478/93‑1 (MQ=255) tcttTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCACCCAGCAGTGGCGCATCGACTTTTTGTTTTAGGGtt > 1:538981/1‑251 (MQ=255) tcttTGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCACCCAGCAGTGGCGCATCGACTTTTTGTTTTAGGGtt > 1:6593/1‑251 (MQ=255) tttGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCACCCAGCAGTGgcg < 1:212139/226‑1 (MQ=255) ttGTAGAAGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCACCCAGCAGTGGCGCATCGACTTTTTGTTTTAGGGTTTCg > 1:687962/1‑251 (MQ=255) aGGCACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCACCCAGCAGTGGCGCATCGACTTTTTGTTTTAGGGTTTCGATCACtt > 1:547556/1‑251 (MQ=255) cACCAGGGTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAAc > 1:28127/1‑80 (MQ=255) gggTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGTAAAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGGTGTCGGTGATGAAACGGCTGAGATCTTGtt > 1:4791/1‑169 (MQ=255) gggTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGc > 1:344388/1‑132 (MQ=255) gggTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCgg > 1:798404/1‑144 (MQ=255) gggTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCACCCAGCAGTGGCGCATCGACTTTTTGTTTTAGGGTTTCGATCACTTCGGCATaa > 1:302191/1‑251 (MQ=255) ggTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGaa > 1:748778/1‑190 (MQ=255) ggTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCACCCAGCAGTGGCGCATCGACTTTTTGTTTTAGGGTTTCGATCACTTCGGCAt < 1:28851/248‑1 (MQ=255) gTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGt < 1:63264/125‑1 (MQ=255) gTTGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCACCCAGCAGTGGCGCATCGACTTTTTGTTTTAGGGTTTCGATCACTTCGGCATAATg > 1:644677/1‑251 (MQ=255) ttGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCACCCAGCAGTGGCGCATCGACTTTTTGTTTTAGGGTTTCGATCACTTCGGCATAATGt < 1:792449/251‑1 (MQ=255) ttGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCACCCAGCAGTGGCGCATCGACTTTTTGTTTTAGGGTTTCGATCACTTCGGCATAATGt < 1:336971/251‑1 (MQ=255) ttGTAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCACCCAGCAGTGGCGCATCGACTTTTTGTTTTAGGGTTTCGATCACTTCGGCATAATGt < 1:707680/251‑1 (MQ=255) tAGCGAATGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCACCCAGCAGTGGCGCATCGACTTTTTGTTTTAGGGTTTCGATCACTTCGGCATAATGTcc < 1:794695/250‑1 (MQ=255) | TGTCAAAGAAGCTACAGCGCTGGGTTGTGCCATTGCCGCAGGCGTCGGAGTCGGCATTTATCCGACCTTAGCCGAGGCGGGGAAAAAACTGGTTAAATTTGAACGGCAACATCAACCGAATCCCGATAACTATGCTTTATACCAAGCTCACAAAGCACAATGGGCAGATATTTATAAAAAACAATTACAACTGGTTGATAGCGGATTAACTACTTCTTTGTAGAAGGCACCAGGGTTGTAGCGAACGATAAAAAAATCGTAGGGGGGACAACTCTCTACGATTTTTTGTTGATATACCGT‑AAAAAACATCGGTAAAACCCACCGCACTTTTATGCCACCGGTTCCGTTTGCATATACGTCAAGCGGTCGATGTCGGTGATGAAACGGCTGAGATCTTGTTCTTCCGGTTTGTGAATATAAGAAACCTCACCCAGCAGTGGCGCATCGACTTTTTGTTTTAGGGTTTCGATCACTTCGGCATAATGTCC > 1/1522447‑1522934 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |