Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,483,135 A→C A40A (GCA→GCC)  unknown → tRNA‑(cytosine32)‑2‑thiocytidine synthetase TtcA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,483,1350AC100.0% 222.7 / NA 75A40A (GCA→GCC) unknowntRNA‑(cytosine32)‑2‑thiocytidine synthetase TtcA
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (41/34);  total (41/34)

AATGCTGTTTTATTGTAACAAAATTGCTACATATTTATCAATATAGCTTGGAAAAAAGCTGTCTTTCCGAATCTTCAATAATTGGATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCAATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTAATTTAGACCAAAAAC‑AACCGGGCTTTCCGGAACATATTTTGCCTGGGTATCTGCAAGGTATCGGGGTGGGTTACAAAATCGTGGAAGAAAACACCTATGGCAT  >  1/1482900‑1483377
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                   
aaTGCTGTTTTATTGTAACAAAATTGCTACATATTTATCAATATAGCTTGGAAAAAAGCTGTCTTTCCGAATCTTCAATAATTGGATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAat                                                                                                                                                                                                                                      <  1:688958/251‑1 (MQ=255)
      gTTTTATTGTAACAAAATTGCTACATATTTATCAATATAGCTTGGAAAAAAGCTGTCTTTCCGAATCTTCAATAATTGGATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGAt                                                                                                                                                                                                                                 >  1:221077/1‑250 (MQ=255)
                     aaTTGCTACATATTTATCAATATAGCTTGGAAAAAAGCTGTCTTTCCGAATCTTCAATAATTGGATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAg                                                                                                                                                                                                                 >  1:847057/1‑251 (MQ=255)
                         gCTACATATTTATCAATATAGCTTGGAAAAAAGCTGTCTTTCCGAATCTTCAATAATTGGATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGa                                                                                                                                                                                                             >  1:458145/1‑251 (MQ=255)
                            aCATATTTATCAATATAGCTTGGAAAAAAGCTGTCTTTCCGAATCTTCAATAATTGGATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATgg                                                                                                                                                                                                          <  1:526967/251‑1 (MQ=255)
                              atatTTATCAATATAGCTTGGAAAAAAGCTGTCTTTCCGAATCTTCAATAATTGGATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCgaaga                                                                                                                                                                                                                           <  1:575901/232‑1 (MQ=255)
                                 tttATCAATATAGCTTGGAAAAAAGCTGTCTTTCCGAATCTTCAATAATTGGATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGACTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGgtgtgt                                                                                                                                                                                                     >  1:815417/1‑251 (MQ=255)
                                   tATCAATATAGCTTGGAAAAAAGCTGTCTTTCCGAATCTTCAATAATTGGATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCGAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCgaaga                                                                                                                                                                                                                           >  1:424732/1‑227 (MQ=255)
                                   tATCAATATAGCTTGGAAAAAAGCTGTCTTTCCGAATCTTCAATAATTGGATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGgtg                                                                                                                                                                                                        <  1:496863/246‑1 (MQ=255)
                                        atatAGCTTGGAAAAAAGCTGTCTTTCCGAATCTTCAATAATTGGATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAg                                                                                                                                                                                                                                              >  1:244912/1‑203 (MQ=255)
                                                             tCTTTCCGAATCTTCAATAATTGGATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGc                                                                                                                                                                         <  1:151462/251‑1 (MQ=255)
                                                                     aaTCTTCAATAATTGGATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGat                                                                                                                                                                 <  1:718025/251‑1 (MQ=255)
                                                                              taatTGGATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAgg                                                                                                                                                                                                                <  1:570043/195‑1 (MQ=255)
                                                                                   ggATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATcc                                                                                                                                                                                               <  1:682737/207‑1 (MQ=255)
                                                                                   ggATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAAttt                                                                                                                                                   >  1:826403/1‑251 (MQ=255)
                                                                                   ggATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAAttt                                                                                                                                                   >  1:160207/1‑251 (MQ=255)
                                                                                   ggATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAAttt                                                                                                                                                   >  1:117452/1‑251 (MQ=255)
                                                                                        acacAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGc                                                                                                                                                                         <  1:852547/224‑1 (MQ=255)
                                                                                             aCCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATc                                                                                                                                                                                                <  1:737366/196‑1 (MQ=255)
                                                                                                       gTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGc                                                                                                                                                                         >  1:273036/1‑209 (MQ=255)
                                                                                                       gTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTttgt                                                                                                                                                          >  1:203000/1‑224 (MQ=255)
                                                                                                          cATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGat                                                                                                                                                                 >  1:111470/1‑214 (MQ=255)
                                                                                                           atatatAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGc                                                                                                                                                                                                                       >  1:106027/1‑159 (MQ=255)
                                                                                                           atatatAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATAc                                                                                                                                                                           <  1:639307/203‑1 (MQ=255)
                                                                                                           atatatAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGc                                                                                                                                                                         <  1:321860/205‑1 (MQ=255)
                                                                                                           atatatAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGc                                                                                                                                                                         <  1:759029/205‑1 (MQ=255)
                                                                                                           atatatAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAAtt                                                                                                                           >  1:168448/1‑251 (MQ=255)
                                                                                                            tatataATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATAc                                                                                                                                                                           >  1:878847/1‑202 (MQ=255)
                                                                                                            tatataATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGat                                                                                                                                                                 <  1:536859/212‑1 (MQ=255)
                                                                                                             atataATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTc                                                                                                                          >  1:177000/1‑250 (MQ=255)
                                                                                                               ataataTGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATAc                                                                                                                                                                           >  1:55548/1‑199 (MQ=255)
                                                                                                                    atGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATtgt                                                                                                                  >  1:314111/1‑251 (MQ=255)
                                                                                                                           cTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGgtg                                                                                                                                                                                                        <  1:443611/158‑1 (MQ=255)
                                                                                                                                aCGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTTAttt                                                                                                      >  1:724131/1‑251 (MQ=255)
                                                                                                                                   cAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAatat                                                                                                                                                                                                                                    <  1:96401/122‑1 (MQ=255)
                                                                                                                                     aTCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAata                                                                                                                                                                                                                                     <  1:79143/119‑1 (MQ=255)
                                                                                                                                     aTCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACGGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCgg                                                                                                             >  1:441697/1‑239 (MQ=255)
                                                                                                                                     aTCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGtttatttatac                                                                                                  >  1:609601/1‑247 (MQ=255)
                                                                                                                                     aTCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTTATTTAGaa                                                                                                  >  1:367103/1‑249 (MQ=255)
                                                                                                                                     aTCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTAAtttttac                                                                                                  >  1:782029/1‑246 (MQ=255)
                                                                                                                                       ccGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTTATTTAGAccca                                                                                               >  1:293155/1‑249 (MQ=255)
                                                                                                                                         gATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAat                                                                                                                                                                                                                                      <  1:181510/114‑1 (MQ=255)
                                                                                                                                         gATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGatat                                                                                                                                                               >  1:503309/1‑185 (MQ=255)
                                                                                                                                         gATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTTAttttgaaccaaa                                                                                             >  1:853495/1‑242 (MQ=255)
                                                                                                                                         gATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTAAtttttaacaaaa                                                                                             >  1:697028/1‑242 (MQ=255)
                                                                                                                                         gATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTAATTTAGAcc                                                                                                 <  1:391560/247‑1 (MQ=255)
                                                                                                                                          aTACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGatat                                                                                                                                                               >  1:394547/1‑184 (MQ=255)
                                                                                                                                          aTACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTTATTTTAACCaaaaa                                                                                            >  1:517492/1‑251 (MQ=255)
                                                                                                                                            aCAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATgg                                                                                                                                                                                                          <  1:526446/139‑1 (MQ=255)
                                                                                                                                             cAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACg                                                                                                                                                                          >  1:105741/1‑170 (MQ=255)
                                                                                                                                                   aCCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGc                                                                                                                                                                         >  1:275408/1‑165 (MQ=255)
                                                                                                                                                   aCCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGatat                                                                                                                                                               >  1:891430/1‑175 (MQ=255)
                                                                                                                                                    cccTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGc                                                                                                                                                                         >  1:365755/1‑164 (MQ=255)
                                                                                                                                                    cccTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGatat                                                                                                                                                               >  1:601034/1‑174 (MQ=255)
                                                                                                                                                            cAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTc                                                                                                                          <  1:716020/203‑1 (MQ=255)
                                                                                                                                                            cAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTAAATTTGAACAAAAAC‑AACCAGGCCTTCCGGaa                                                                         >  1:606936/1‑251 (MQ=255)
                                                                                                                                                                aaCGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAatat                                                                                                                                                                                                                                    >  1:6396/1‑93 (MQ=255)
                                                                                                                                                                aaCGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGAt                                                                                                                     >  1:589847/1‑204 (MQ=255)
                                                                                                                                                                aaCGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTAATTTAAAAAAAAAAA‑AACCCGGCTCTCCGGAACata                                                                     >  1:820668/1‑251 (MQ=255)
                                                                                                                                                                       aCCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGAt                                                                                                                     >  1:476104/1‑197 (MQ=255)
                                                                                                                                                                               gaaAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAat                                                                                                                                                                                                                                      <  1:521819/76‑1 (MQ=255)
                                                                                                                                                                               gaaAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTTATTTTGACCCAAAACAAACCGGCTTTTCCGGacaaattttttctggggatt                                                       >  1:776012/1‑232 (MQ=255)
                                                                                                                                                                                   aaaaGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTAATTTAGACCAAAAAC‑AACCGGGCTTTCCGGAACATATTTTGCCTGGGTATCTGCa                                                  <  1:325759/251‑1 (MQ=255)
                                                                                                                                                                                   aaaaGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTAATTTAGACCAAAAAC‑AACCGGGCTTTCCGGAACATATTTTGCCTGGGTATCTGCa                                                  <  1:89145/251‑1 (MQ=255)
                                                                                                                                                                                       gCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGAC‑AGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGatat                                                                                                                                                               >  1:73803/1‑138 (MQ=255)
                                                                                                                                                                                        cTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTAATTTAGAcc                                                                                                 <  1:410272/200‑1 (MQ=255)
                                                                                                                                                                                        cTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTAATTTAGACCAAAAAC‑AACCGGGCTTTCCGGAACATATTTTGCCTGGGTATCTGCAAGGt                                              <  1:225625/250‑1 (MQ=255)
                                                                                                                                                                                              tttCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAatat                                                                                                                                                                                                                                    <  1:682428/63‑1 (MQ=255)
                                                                                                                                                                                              tttCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTAATTTAGACCAAAAAC‑AACCGGGCTTTCCGGAACATATTTTGCCTGGGTATCTGCAAGGTATCgggg                                       <  1:112235/251‑1 (MQ=255)
                                                                                                                                                                                              tttCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTAATTTAGACCAAAAAC‑AACCGGGCTTTCCGGAACATATTTTGCCTGGGTATCTGCAAGGTATCgggg                                       <  1:95920/251‑1 (MQ=255)
                                                                                                                                                                                                     aaaTTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTAATTTAGACCAAAAAC‑AACCGGGCTTTCCGGAACATATTTTGcc                                                              <  1:144475/221‑1 (MQ=255)
                                                                                                                                                                                                           cAAAAACGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTAATTTAGACCAAAAAC‑AACCGGGCTTTCCGGAACATATTTTGCCTGGGTATCTGCAAGGTATCGGGGTGGGTTACAAAAt                          <  1:352134/251‑1 (MQ=255)
                                                                                                                                                                                                                 cGTCTACGCCGAAATGTGGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTAATTTAGACCAAAAAC‑AACCGGGCTTTCCGGAACATATTTTGCCTGGGTATCTGCAAGGTATCGGGGTGGGTTACAAAAt                          <  1:6429/245‑1 (MQ=255)
                                                                                                                                                                                                                                 tgGGAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTAATTTAGACCAAAAAC‑AACCGGGCTTTCCGGAACATATTTTGCCTGGGTATCTGCAAGGTATCGGGGTGGGTTACAAAATCGTGGAAGAAAACACCTATGGc    <  1:374620/251‑1 (MQ=255)
                                                                                                                                                                                                                                    gAAACGCCATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTAATTTAGACCAAAAAC‑AACCGGGCTTTCCGGAACATATTTTGCCTGGGTATCTGCAAGGTATCGGGGTGGGTTACAAAATCGTGGAAGAAAACACCTATGGCAt  <  1:321621/250‑1 (MQ=255)
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                   
AATGCTGTTTTATTGTAACAAAATTGCTACATATTTATCAATATAGCTTGGAAAAAAGCTGTCTTTCCGAATCTTCAATAATTGGATTACACAACCCCCGTCGGTTCATATATAATATGCCGCCTTTTACGCAATCCGATACAGACAACCCTATGACAATAACGCAAACCGAGAAGAAAAAAAGCTATAATTTCAATAAATTGCAAAAACGTCTACGCCGAAATGTGGGAAACGCAATTGCAGATTTTAATATGATCGAAGAAGGCGACAAGGTGATGGTGTGTTTATCCGGCGGGAAGGACAGCTATACGCTGTTAGATATTTTGTTGAATTTACAGCAAAATGCGCCGATAAAATTCCGGATTGTGGCGGTTAATTTAGACCAAAAAC‑AACCGGGCTTTCCGGAACATATTTTGCCTGGGTATCTGCAAGGTATCGGGGTGGGTTACAAAATCGTGGAAGAAAACACCTATGGCAT  >  1/1482900‑1483377

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑