| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,472,383 | C→T | A433V (GCC→GTC) | unknown → | Efflux transport system, outer membrane factor (OMF) lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,472,383 | 0 | C | T | 98.7% | 206.5 / NA | 76 | A433V (GCC→GTC) | unknown | Efflux transport system, outer membrane factor (OMF) lipoprotein |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (33/42); total (33/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGCCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGCCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCTATATAAAATAAAGCATAAAGATGTGTATAAT > 1/1472155‑1472633 | gACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCGGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGc < 1:49252/250‑1 (MQ=255) cccAACATTGACGCCGCCGCCGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCa < 1:132353/250‑1 (MQ=255) cccAACATTGACGCCCCCGCCGCCCGCCTGAAAGCTGCCTTCCTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCa < 1:120291/250‑1 (MQ=255) aCATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAAc < 1:783760/251‑1 (MQ=255) cATTGCCGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAAcc < 1:327917/251‑1 (MQ=255) cgccgACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATcc < 1:66912/251‑1 (MQ=255) aCGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAg < 1:402007/250‑1 (MQ=255) ccTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCa > 1:83448/1‑225 (MQ=255) ccTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAg > 1:66295/1‑251 (MQ=255) gCCTTACTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCgaa > 1:669854/1‑251 (MQ=255) aCTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCAc > 1:401820/1‑183 (MQ=255) aCTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAAc > 1:774988/1‑218 (MQ=255) cTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGc < 1:492226/228‑1 (MQ=255) cTTCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAAttt > 1:785036/1‑251 (MQ=255) tCAATACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGa < 1:406841/251‑1 (MQ=255) aaTACGACAAAGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGAtt < 1:178532/251‑1 (MQ=255) aaGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGtat < 1:721070/251‑1 (MQ=255) aaGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGtat < 1:272062/251‑1 (MQ=255) aaGGCTTGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGtat < 1:126934/251‑1 (MQ=255) ttGCTGCAAGTCCTTGCCGATGTAGATACCAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGc < 1:445219/251‑1 (MQ=255) ttGCTGCAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGc < 1:727317/251‑1 (MQ=255) gaaatgtgtaaaagagacaggTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGc < 1:610503/230‑1 (MQ=255) ctgcAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTAc < 1:471006/186‑1 (MQ=255) ctgcAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCa > 1:772419/1‑249 (MQ=255) cAAGTCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAgg < 1:737988/251‑1 (MQ=255) gATGAAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGtt < 1:458186/223‑1 (MQ=255) aTGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATcc > 1:546988/1‑186 (MQ=255) aTGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGAtt < 1:526954/218‑1 (MQ=255) aTGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTc < 1:552449/250‑1 (MQ=255) gTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGa > 1:65160/1‑251 (MQ=255) aGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGAt < 1:691530/163‑1 (MQ=255) aGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAg > 1:774480/1‑250 (MQ=255) gATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCg > 1:690976/1‑251 (MQ=255) tAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAg > 1:355937/1‑213 (MQ=255) gCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGc > 1:874892/1‑179 (MQ=255) gCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGaaaa > 1:486725/1‑251 (MQ=255) aTCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGc > 1:899128/1‑240 (MQ=255) ggCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGtat < 1:446087/208‑1 (MQ=255) ggCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGtat < 1:441646/208‑1 (MQ=255) ggCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGtaaaacaccgagaaaatccac > 1:827002/1‑230 (MQ=255) gCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACg < 1:790182/248‑1 (MQ=255) gCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGttt > 1:294265/1‑251 (MQ=255) gCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCCTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCa < 1:177716/152‑1 (MQ=255) aCCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGt > 1:166653/1‑251 (MQ=255) aCCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGCGGAAGAATTTGATAAGTTTGTATAAAGAACTGGGTGGCGGTTGGTCCGAGCGAGGAAAAAAAGGTTTGCGAACCCGA‑CGCAACTTTTGCGt > 1:1685/1‑251 (MQ=255) cccAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCgaagaa < 1:888840/166‑1 (MQ=255) ttGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGc < 1:491538/192‑1 (MQ=255) tGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTaa > 1:88080/1‑251 (MQ=255) gCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTAcc < 1:652624/119‑1 (MQ=255) gCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGt > 1:2417/1‑187 (MQ=255) gCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTaaa > 1:331955/1‑251 (MQ=255) gCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTaaa > 1:180320/1‑251 (MQ=255) aCAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGTAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGt < 1:228433/240‑1 (MQ=255) ggcaggcaATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGAtt > 1:441370/1‑133 (MQ=255) ggcaggcaATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTgcg > 1:656943/1‑251 (MQ=255) gcaATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGcgcc < 1:140893/248‑1 (MQ=255) aTGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAg < 1:487642/212‑1 (MQ=255) ttattTAACTACGGCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACt > 1:869577/1‑250 (MQ=255) attTAACTACGGCGAAAAACCCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGc < 1:346329/251‑1 (MQ=255) aCTACGGCGAAAAACCCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCtatat < 1:204445/251‑1 (MQ=255) gCGAAAAAACCTTAGACACCGTCCTCCCCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCTATataaaat < 1:739937/250‑1 (MQ=255) gCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATTCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACt < 1:439289/237‑1 (MQ=255) gCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCTATataaaata > 1:777817/1‑251 (MQ=255) gCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCTATataaaat < 1:90742/250‑1 (MQ=255) gCGAAAAAACCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCTATataaaat < 1:118123/250‑1 (MQ=255) aaaaaCCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCTATATAAAATAAAGc < 1:836654/251‑1 (MQ=255) aCCTTAGACAACGTCCTCCCCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCTATataaaat < 1:395589/242‑1 (MQ=255) aCCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGGGTTTTGTAAAAGTGCggtgg > 1:76098/1‑188 (MQ=255) aCCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTc > 1:161251/1‑230 (MQ=255) aCCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCTATataaaat > 1:526630/1‑242 (MQ=255) aCCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCTATATAAAATAAAGCATaa > 1:392973/1‑251 (MQ=255) aCCTTAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCTATATAAAATAAAGCATaa > 1:127730/1‑251 (MQ=255) ttAGACAACGTCCTCCCCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCTATATAAAATAAAGCATAAAGa < 1:856978/251‑1 (MQ=255) ttAGACAACGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCTATATAAAATAAAGCATAAAGa < 1:597468/251‑1 (MQ=255) ttAGACAACGCCCTCCCCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCTATATAAAATAAAGCATAAAGa < 1:236935/251‑1 (MQ=255) aaCGTCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCTATATAAAATAAAGc > 1:662023/1‑238 (MQ=255) cccTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCTATATAAAATAAAGCATAAAGATGTGTATAAt < 1:456424/251‑1 (MQ=255) cccTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCTATATAAAATAAAGCATAAAGATGTGTATAAt < 1:47253/251‑1 (MQ=255) cccTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCTATATAAAATAAAGCATAAAGATGTGTATAAt < 1:122422/251‑1 (MQ=255) | GACGCATTCAAGCCAACATTGACGCCGCCGACGCCCGCCTGAAAGCTGCCTTACTTCAATACGACAAAGGCTTGCTGCAAGCCCTTGCCGATGTAGATAACAGCTATCAGGCACAAGCCGCATTAAATCGCCAAACCCAATTGCTACAAACCGCCTGCCAACAGGCGCAAAAGCAGGCAGGCAATGCGGAGAAATTATTTAACTACGGCGAAAAAACCTTAGACAACGCCCTCACCGCCCGCCTCACCGCACTGGATTACCAAAACCAACTCATCCAAAGCCGTTTAGCGGGGGCGAAGAATTTGATTAGTTTGTATAAAGCACTAGGTGGCGGTTGGTCCGAGCGATGAAAAAAACGTTTGCGAAATCGACCGC‑ACTTTTGCGTTTTGTAAAAGTGCGGTGGTTTTCCCGATGTTTTTCACTGCGCCCGCCTTACCCCAAACTCGCTATATAAAATAAAGCATAAAGATGTGTATAAT > 1/1472155‑1472633 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |