Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,284,678	A→G	I261V (ATT→GTT)	unknown →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,284,678	0	A	G	100.0%	154.7 / NA	54	I261V (ATT→GTT)	unknown	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (29/25);  total (29/25)

AAAGACGTCCTGTTACCTATGACGAGGCTATAAAGCTTAATAGAAAGTTAGTAATGTTACCTAAGGCGCTTATTGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCATTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAATATATCTCTTCGCTTTAGTTTTATTTTTAATTAGCCAGAGTTAGTCAGTTTTTATTTTAAGGGAAAAGGCTGCTTAAATTAGTC  >  1/1284448‑1284914                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                             aaagaCGTCCTGTTACCTATGACGAGGCTATAAAGCTTAATAGAAAGTTAGTAATGTTACCTAAGGCGCTTATTGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGt                                                                                                                                                                                                                            <  1:638544/249‑1 (MQ=255)         ccTGTTACCTATGACGAGGCTATAAAGCTTAATAGAAAGTTAGTAATGTTACCTAAGGCGCTTATTGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGttt                                                                                                                                                                                                                                        >  1:192562/1‑229 (MQ=255)                ccTATGACGAGGCTATAAAGCTTAATAGAAAGTTAGTAATGTTACCTAAGGCGCTTATTGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGAttt                                                                                                                                                                                                            >  1:304505/1‑250 (MQ=255)                        gAGGCTATAAAGCTTAATAGAAAGTTAGTAATGTTACCTAAGGCGCTTATTGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGtt                                                                                                                                                                                                   >  1:716481/1‑251 (MQ=255)                                    cTTAATAGAAAGTTAGTAATGTTACCTAAGGCGCTTATTGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTatga                                                                                                                                                                                       <  1:500738/251‑1 (MQ=255)                                      tAATAGAAAGTTAGTAATGTTACCTAAGGCGCTTATTGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTatgatg                                                                                                                                                                                     >  1:735728/1‑251 (MQ=255)                                              aGTTAGTAATGTTACCTAAGGCGCTTATTGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCtt                                                                                                                                                                                            >  1:310008/1‑236 (MQ=255)                                               gTTAGTAATGTTACCTAAGGCGCTTATTGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAg                                                                                                                                                                            >  1:413485/1‑251 (MQ=255)                                                ttAGTAATGTTACCTAAGGCGCTTATTGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAgg                                                                                                                                                                                                                                   >  1:80170/1‑195 (MQ=255)                                                      aTGTTACCTAAGGCGCTTATTGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATaa                                                                                                                                                                     >  1:292001/1‑251 (MQ=255)                                                        gTTACCTAAGGCGCTTATTGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTatga                                                                                                                                                                                       >  1:81218/1‑231 (MQ=255)                                                         ttACCTAAGGCGCTTATTGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAg                                                                                                                                                                  <  1:769172/251‑1 (MQ=255)                                                                     cTTATTGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGa                                                                                                                                                      >  1:257317/1‑251 (MQ=255)                                                                        aTTGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAata                                                                                                                                                   >  1:377470/1‑251 (MQ=255)                                                                        aTTGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAata                                                                                                                                                   >  1:792060/1‑251 (MQ=255)                                                                         ttGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAatat                                                                                                                                                  >  1:623021/1‑251 (MQ=255)                                                                          tGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGgt                                                                                                                                                            >  1:28281/1‑240 (MQ=255)                                                                                        ataaGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCa                                                                                                                                    >  1:21869/1‑250 (MQ=255)                                                                                           aGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTatga                                                                                                                                                                                       <  1:243171/196‑1 (MQ=255)                                                                                                gAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGa                                                                                                                           >  1:436533/1‑251 (MQ=255)                                                                                                  gTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAg                                                                                                                         >  1:274492/1‑251 (MQ=255)                                                                                                  gTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAg                                                                                                                         >  1:541083/1‑251 (MQ=255)                                                                                                    tttGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAggg                                                                                                                       <  1:660457/251‑1 (MQ=255)                                                                                                    tttGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAggg                                                                                                                       <  1:500779/251‑1 (MQ=255)                                                                                                                        gatTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAgg                                                                                                                        <  1:133300/230‑1 (MQ=255)                                                                                                                                          gCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAatatat                                                                                 >  1:688253/1‑251 (MQ=255)                                                                                                                                             aCGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAATATAtctc                                                                              <  1:818625/251‑1 (MQ=255)                                                                                                                                               gttcagttcaAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAatat                                                                                                                                                  <  1:75379/181‑1 (MQ=255)                                                                                                                                               gttcagttcaAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAATATAtc                                                                                <  1:836147/247‑1 (MQ=255)                                                                                                                                               gttcagttcaAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAATATATCTCtt                                                                            >  1:135344/1‑251 (MQ=255)                                                                                                                                                    gttcaAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTatga                                                                                                                                                                                       <  1:367654/139‑1 (MQ=255)                                                                                                                                                            ccTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAATATATCTCTTCGCTTTAGTTTTa                                                               <  1:838410/251‑1 (MQ=255)                                                                                                                                                                  aCTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAATATATCTCTTCGCTTTAGTTTTATTTTTa                                                         >  1:751451/1‑251 (MQ=255)                                                                                                                                                                   cTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGttt                                                                                                                                                                                                                                        <  1:37702/75‑1 (MQ=255)                                                                                                                                                                   cTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGAc                                                                                                <  1:447837/211‑1 (MQ=255)                                                                                                                                                                             aTCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACa                                                                                               <  1:163897/202‑1 (MQ=255)                                                                                                                                                                             aTCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTaaaaaa                                                                                      >  1:375406/1‑211 (MQ=255)                                                                                                                                                                             aTCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAATATAtc                                                                                <  1:75250/217‑1 (MQ=255)                                                                                                                                                                             aTCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAATATATCTCTTCGCTTTAGTTTTATTTTTAATTAGCCagag                                              >  1:740289/1‑251 (MQ=255)                                                                                                                                                                                     aaTATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAATATATCTCTTCGCTTTAGTTTTATTTTTAATTAGCCAGAGTTAGTCAg                                      <  1:155482/251‑1 (MQ=255)                                                                                                                                                                                     aaTATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTCCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAat                                                                                     <  1:614114/204‑1 (MQ=255)                                                                                                                                                                                                  aGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTatga                                                                                                                                                                                       >  1:324019/1‑93 (MQ=255)                                                                                                                                                                                                  aGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAg                                                                                                                                                                  <  1:621350/114‑1 (MQ=255)                                                                                                                                                                                                           gggTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAatat                                                                                                                                                  <  1:151572/121‑1 (MQ=255)                                                                                                                                                                                                            ggTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAATATATCTCTTCGCTTTAGTTTTATTTTTAATTAGCCAGAGTTAGTCAGTTTTTATTTTAAGGGAAAAgg                 >  1:364487/1‑249 (MQ=255)                                                                                                                                                                                                            ggTAAAAACAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAATATATCTCTTCGCTTTAGTTTTATTTTTAATTAGCCAGAGTTAGTCAGTTTTTATTTTAAGGGAAAAgg                 >  1:622286/1‑249 (MQ=255)                                                                                                                                                                                                                aaaaCAGTGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAATATATCTCTTCGCTTTAGTTTTATTTTTAATTAGCCAGAGTTAGTCAGTttttatt                              >  1:9829/1‑232 (MQ=255)                                                                                                                                                                                                                       tGATATCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAATATATCTCTTCGCTTTAGTTTTATTTTTAATTAGCCAGAGTTAGTCAGTTTTTATTTTAAGGGAAAAGGCTGCTTAAAtt      <  1:866011/249‑1 (MQ=255)                                                                                                                                                                                                                          tatCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAATATATCTCTTCGCTTTAGTTTTATTTTTAATTAGCCAGAGTTAGTCAGTTTTTATTTTAAGGGAAAAGGCTGCTTAAAtt      <  1:839696/246‑1 (MQ=255)                                                                                                                                                                                                                           atCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGc                                                                                                                                                                           >  1:665044/1‑80 (MQ=255)                                                                                                                                                                                                                           atCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAATATATCTCTTCGCTTTAGTTTTATTTTTAATTAGCCAGAGTTAGTCAGTTTTTATTTTAAGGGAAAAGGCTGCTTAAATTAGTc  >  1:112255/1‑249 (MQ=255)                                                                                                                                                                                                                            tCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTc                                                                                                                                     <  1:777058/117‑1 (MQ=255)                                                                                                                                                                                                                            tCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAATATATCTCTTCGCTTTAGtt                                                                  <  1:364313/184‑1 (MQ=255)                                                                                                                                                                                                                            tCTTACCACTCGTTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAATATATCTCTTCGCTTTAGTTTTATTTTTAATTAGCCAGAGt                                             <  1:783550/205‑1 (MQ=255)                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                             AAAGACGTCCTGTTACCTATGACGAGGCTATAAAGCTTAATAGAAAGTTAGTAATGTTACCTAAGGCGCTTATTGATAGCTTTGATAATAAGTATGAGTTTTGGAAAGAAACTTGGGATGATTCGTCTGATGTATTGGCTACGTTCAGTTCAAATCCTACAACTTTTAAATTATCTAACGAATATCAAGAATTAGTTAAACTGGGTAAAAACAGTGATATCTTACCACTCATTGTTTTGAGGCTTCTGTTTTTTAAAAATGATTTCTTTGCGTTACAGCTTTATGATGAATTACAAGCAAATAAAAGTTTGGTTGTTGAATATGATGATAATTTTCACCTGTTAGAAGGGGAAAAAGGGCGAGCTCACTTGACAGTTAAAAAATATATCTCTTCGCTTTAGTTTTATTTTTAATTAGCCAGAGTTAGTCAGTTTTTATTTTAAGGGAAAAGGCTGCTTAAATTAGTC  >  1/1284448‑1284914

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑