Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,393,164 (A)8→9 intergenic (+1176/+208) unknown → / ← unknown LSU ribosomal protein L20p/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,393,1561.A100.0% 56.9 / NA 21intergenic (+1168/+216)unknown/unknownLSU ribosomal protein L20p/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base A (8/13);  total (8/13)

ATTGAATACTATAAGGGGGTGGGAGCTAGGTCCTGTTAGGGTTTTACAGGAAAATTGAAAAGCGTTTTGGTACGAAATCTACTTTCTAAAATAGACTACATTTTTCTCTGTTCTCGAAAAAGAAAAAACCGCTACCCAATTCTGGATAGCGGGGAGGTCTTAAATATAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATG‑AAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAACTCATTAATAAATAGTAAGAAAACTTTTTAAATAAGATTAAATAACTTGTTTTGTAAATTCTTGTATGAGGTTTTTTTGTTCTTAACCATCTCTTTTCAGCTATTGTCGGTTGTAACCGACAGATTTCTATGGTGCCTGTCCTAGCCTACCACTTCTAC  >  1/1392908‑1393370
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                      
aTTGAATACTATAAGGGGGTGGGAGCTAGGTCCTGTTAGGGTTTTACAGGAAAATTGAAAAGCGTTTTGGTACGAAATCTACTTTCTAAAATAGACTACATTTTTCTCTGTTCTCGAAAAAGAAAAAACCGCTACCCAATTCTGGATAGCGGGGAGGTCTTAAATATAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATG‑aa                                                                                                                                                                                                                      >  1:401826/1‑251 (MQ=255)
        cTATAAGGGGGTGGGAGCTAGGTCCTGTTAGGGTTTTACAGGAAAATTGAAAAGCGTTTTGGTACGAAATCTACTTTCTAAAATAGACTACATTTTTCTCTGTTCTCGAAAAAGAAAAAACCGCTACCCAATTCTGGATAGCGGGGAGGTCTTAAATATAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATG‑aaaaaaaaa                                                                                                                                                                                                               >  1:791851/1‑249 (MQ=255)
        cTATAAGGGGGTGGGAGCTAGGTCCTGTTAGGGTTTTACAGGAAAATTGAAAAGCGTTTTGGTACGAAATCTACTTTCTAAAATAGACTACATTTTTCTCTGTTCTCGAAAAAGAAAAAACCGCTACCCAATTCTGGATAGCGGGGAGGTCTTAAATATAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATG‑aaaaaaaaa                                                                                                                                                                                                               >  1:790409/1‑249 (MQ=255)
        cTATAAGGGGGTGGGAGCTAGGTCCTGTTAGGGTTTTACAGGAAAATTGAAAAGCGTTTTGGTACGAAATCTACTTTCTAAAATAGACTACATTTTTCTCTGTTCTCGAAAAAGAAAAAACCGCTACCCAATTCTGGATAGCGGGGAGGTCTTAAATATAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATG‑aaaaaaaaa                                                                                                                                                                                                               >  1:761163/1‑249 (MQ=255)
          ataAGGGGGTGGGAGCTAGGTCCTGTTAGGGTTTTACAGGAAAATTGAAAAGCGTTTTGGTACGAAATCTACTTTCTAAAATAGACTACATTTTTCTCTGTTCTCGAAAAAGAAAAAACCGCTACCCAATTCTGGATAGCGGGGAGGTCTTAAATATAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATG‑aaaaaaaaactt                                                                                                                                                                                                            >  1:735456/1‑247 (MQ=255)
                               ccTGTTAGGGTTTTACAGGAAAATTGAAAAGCGTTTTGGTACGAAATCTACTTTCTAAAATAGACTACATTTTTCTCTGTTCTCGAAAAAGAAAAAACCGCTACCCAATTCTGGATAGCGGGGAGGTCTTAAATATAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACAt                                                                                                                                                                                        <  1:100681/251‑1 (MQ=255)
                                                       tGAAAAGCGTTTTGGTACGAAATCTACTTTCTAAAATAGACTACATTTTTCTCTGTTCTCGAAAAAGAAAAAACCGCTACCCAATTCTGGATAGCGGGGAGGTCTTAAATATAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAAc                                                                                                                                                                <  1:90868/251‑1 (MQ=255)
                                                         aaaaGCGTTTTGGTACGAAATCTACTTTCTAAAATAGACTACATTTTTCTCTGTTCTCGAAAAAGAAAAAACCGCTACCCAATTCTGGATAGCGGGGAGGTCTTAAATATAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAACt                                                                                                                                                               <  1:284046/250‑1 (MQ=255)
                                                                 tttGGTACGAAATCTACTTTCTAAAATAGACTACATTTTTCTCTGTTCTCGAAAAAGAAAAAACCGCTACCCAATTCTGGATAGCGGGGAGGTCTTAAATATAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAACTCATtaataa                                                                                                                                                      <  1:412497/251‑1 (MQ=255)
                                                                        cGAAATCTACTTTCTAAAATAGACTACATTTTTCTCTGTTCTCGAAAAAGAAAAAACCGCTACCCAATTCTGGATAGCGGGGAGGTCTTAAATATAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAACTCATTaataaat                                                                                                                                                    <  1:61333/246‑1 (MQ=255)
                                                                                                                           aaaaaCCGCTACCCAATTCTGGATAGCGGGGAGGTCTTAAATATAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAACTCATTAATAAATAGTAAGAAAACTTTTTAAATAAGATTAAATAACTTGTTTTGTAAATTTTTGTATGa                                                                                            >  1:464355/1‑251 (MQ=255)
                                                                                                                                          aTTCTGGATAGCGGGGAGGTCTTAAATATAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAACTCATtaataa                                                                                                                                                      >  1:880199/1‑178 (MQ=255)
                                                                                                                                                            gTCTTAAATATAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTc                                                                                                                                                                                      <  1:202517/128‑1 (MQ=255)
                                                                                                                                                            gTCTTAAATATAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACTTGAAATTAATTATTAAATAGTAGGAAAACTTTTTAAATAAGTTTAATTACTTTGTTTTGAAAATTTTTGAATGAGGTTTTTTTGTTCTTAACAAT‑TCtttttcagtt                                                          >  1:365986/1‑245 (MQ=255)
                                                                                                                                                            gTCTTAAATATAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAACt                                                                                                                                                               <  1:493800/151‑1 (MQ=255)
                                                                                                                                                            gTCTTAAATATAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAACTCATtaat                                                                                                                                                        >  1:114996/1‑158 (MQ=255)
                                                                                                                                                                   atatAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACAt                                                                                                                                                                                        >  1:543295/1‑119 (MQ=255)
                                                                                                                                                                      taAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAACTCATTAATAAATAGTAAGAAAACTTTTTAAATAAGATTAAATAACTTGTTTTGTAAATTTTTGTATGAGGTTTTTTTGTTCTTAACCATCTCTTTTCAGCTATTGTCGGtt                                                 >  1:817164/1‑251 (MQ=255)
                                                                                                                                                                             aCTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAACTCATTAATAAATAGTAAGAAAACTTTTTAAATAAGATTAAATAACTTGTTTTGTAAATTTTTGTATGAGGTTTTTTTGTTCTTAACCATCTCTTTTCAGCTATTGTCGGTTGTAACCg                                          >  1:792864/1‑251 (MQ=255)
                                                                                                                                                                                         aCTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAACTCATTAATAAATAGTAAGAAAACTTTTTAAATAAGATTAAATAACTTGTTTTGTAAATTTTTGTATGAGGTTTTTTTGTTCTTAACCATCTCTTTTCAGCTATTGTCGGTTGTAACCGAc                                        >  1:283983/1‑241 (MQ=255)
                                                                                                                                                                                           tGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAACTCATTAATAAATAGTAAGAAAACTTTTTAAATAAGATTAAATAACTTGTTTTGTAAATTTTTGTATGAGGTTTTTTTGTTCTTAACCATCTCTTTTCAGCTATTGTCGGTTGTAACCGACAGATTTCTATgg                            <  1:167149/251‑1 (MQ=255)
                                                                                                                                                                                             cATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAACTCATTAATAAATAGTAAGAAAACTTTTTAAATAAGATTAAATAACTTGTTTTGTAAATTTTTGTATGAGGTTTTTTTGTTCTTAACCATCTCTTTTCAGCTATTGTCGGTTGTAACCGACAGATTTCTATGGTg                          <  1:578397/251‑1 (MQ=255)
                                                                                                                                                                                                         aCTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAACTCATTAATAAATAGTAAGAAAACTTTTTAAATAAGATTAAATAACTTGTTTTGTAAATTTTTGTATGAGGTTTTTTTGTTCTTAACCATCTCTTTTCAGCTATTGTCGGTTGTAACCGACAGATTTCTATGGTGCCTGTCCTAGcc              <  1:641317/251‑1 (MQ=255)
                                                                                                                                                                                                         aCTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAACTCATTAATAAATAGTAAGAAAACTTTTTAAATAAGATTAAATAACTTGTTTTGTAAATTTTTGTATGAGGTTTTTTTGTTCTTAACCATCTCTTTTCAGCTATTGTCGGTTGTAACCGACAGATTTCTATGGTGCCTGTCCTAGcc              <  1:682059/251‑1 (MQ=255)
                                                                                                                                                                                                                attattAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAACTCATTAATAAATAGTAAGAAAACTTTTTAAATAAGATTAAATAACTTGTTTTGTAAATTTTTGTATGAGGTTTTTTTGTTCTTAACCATCTCTTTTCAGCTATTGTCGGTTGTAACCGACAGATTTCTATgg                            <  1:80542/230‑1 (MQ=255)
                                                                                                                                                                                                                        gACTAGAAACAGAAAAAATAGTTCGTAAAAATGAAAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAACTCATTAATAAATAGTAAGAAAACTTTTTAAATAAGATTAAATAACTTGTTTTGTAAATTTTTGTATGAGGTTTTTTTGTTCTTAACCATCTCTTTTCAGCTATTGTCGGTTGTAACCGACAGATTTCTATGGTGCCTGTCCTAGCCTACCACTTCTAc  <  1:88410/248‑1 (MQ=255)
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                      
ATTGAATACTATAAGGGGGTGGGAGCTAGGTCCTGTTAGGGTTTTACAGGAAAATTGAAAAGCGTTTTGGTACGAAATCTACTTTCTAAAATAGACTACATTTTTCTCTGTTCTCGAAAAAGAAAAAACCGCTACCCAATTCTGGATAGCGGGGAGGTCTTAAATATAAGAAAACTTTAAAGACAACTGCATTTGCAGTGCACTAGCAATTATTAAGACTAGAAACAGAAAAAATAGTTCGTAAAAATG‑AAAAAAAACTTGTAATTTACAAAAGCTTACATTCTATTTTTTCGAAGACCTGTAACTCATTAATAAATAGTAAGAAAACTTTTTAAATAAGATTAAATAACTTGTTTTGTAAATTCTTGTATGAGGTTTTTTTGTTCTTAACCATCTCTTTTCAGCTATTGTCGGTTGTAACCGACAGATTTCTATGGTGCCTGTCCTAGCCTACCACTTCTAC  >  1/1392908‑1393370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑