BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	93,600	2 bp→CC	coding (271‑272/1239 nt)	unknown ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	93,600	0	T	C	100.0%	223.7 / NA	75	N91G (AAC→GGC)	unknown	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (40/35); total (40/35)
*	1	93,601	0	T	C	100.0%	222.5 / NA	75	N91G (AAC→GGC)	unknown	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (40/35); total (40/35)

CGCGAGCCTATAATGCGCAGGGTAACTGCACTTTTACCCAAAAAATTAAAGGTAACCACACAATCAATGGTGGGCGCGCCTTGCATGCCGACGTTAACCGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CC‑ACAACAGACACCGATAAAAGTTTGACCGCGCTGCGGTTGGCGTTCCAAATTTGCACGTTAAAGGTCTGGTCGGTAGAGATTGCACCCAGATTTACCGTGTGCGGGATAACCACAATGCGGCGATATAAATCAAGGTAAAAATTGGGCGTGATATAACCGCCCGATTGGTGCGTAACATCCGCTTCTTGATTGCCGATAAAATGCGCGTTATAGACTTTAAACGGGGCTTTAATCCGCCATTTATCACTGCGGTAGGTGACCAGTCCGGTTTTAAATAATGCCGTACCGGCGTTAAGC  >  1/93372‑93839

||

cgcgAGCCTATAATGCGCAGGGTAACCGCACTTTTACCCAAAAAATTAAAGGTAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGAt                                                                                                                                                                                                                           <  1:653706/251‑1 (MQ=255)

cgcgAGCCTATAATGCGCAGGGTAACCGCACTTTTACCCAAAAAATTAAAGGTAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGAt                                                                                                                                                                                                                           <  1:188214/251‑1 (MQ=255)

    aGCCTATAATGCGCAGGGTAACCGCACTTTTACCCAAAAAATTAAAGGTAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACCACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCa                                                                                                                                                                                                                       >  1:446346/1‑251 (MQ=255)

    aGCCTATAATGCGCAGGGTAACCGCACTTTTACCCAAAAAATTAAAGGTAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCa                                                                                                                                                                                                                       >  1:532341/1‑251 (MQ=255)

    aGCCTATAATGCGCAGGGTAACCGCACTTTTACCCAAAAAATTAAAGGTAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTC‑GTTGAGATTGCa                                                                                                                                                                                                                       >  1:366129/1‑250 (MQ=255)

         ataATGCGCAGGGTAACCGCACTTTTACCCAAAAAATTAAAGGTAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAg                                                                                                                                                                                                                  >  1:854739/1‑251 (MQ=255)

         ataATGCGCAGGGTAACCGCACTTTTACCCAAAAAATTAAAGGTAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAg                                                                                                                                                                                                                  >  1:405469/1‑251 (MQ=255)

         ataATGCGCAGGGTAACCGCACTTTTACCCAAAAAATTAAAGGTAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAg                                                                                                                                                                                                                  >  1:224009/1‑251 (MQ=255)

               cgcAGGGTAACCGCACTTTTACCCAAAAAATTAAAGGTAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTAc                                                                                                                                                                                                            <  1:515260/251‑1 (MQ=255)

               cgcAGGGTAACCGCACTTTTACCCAAAAAATTAAAGGTAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTAc                                                                                                                                                                                                            <  1:454248/251‑1 (MQ=255)

                   gggTAACCGCACTTTTACCCAAAAAATTAAAGGTAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGAt                                                                                                                                                                                                                >  1:458893/1‑243 (MQ=255)

                   gggTAACCGCACTTTTACCCAAAAAATTAAAGGTAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTAc                                                                                                                                                                                                            <  1:480284/247‑1 (MQ=255)

                   gggTAACCGCACTTTTACCCAAAAAATTAAAGGTAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCgta                                                                                                                                                                                                        >  1:178906/1‑250 (MQ=255)

                    ggTAACCGCACTTTTACCCAAAAAATTAAAGGTAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCg                                                                                                                                                                                                          <  1:785963/248‑1 (MQ=255)

                    ggTAACCGCACTTTTACCCAAAAAATTAAAGGTAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCg                                                                                                                                                                                                          <  1:252178/248‑1 (MQ=255)

                                               aaaGGTAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACcaggat                                                                                                                                                                                       >  1:124466/1‑236 (MQ=255)

                                                  ggTAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAAt                                                                                                                                                                         >  1:741012/1‑251 (MQ=255)

                                                    tAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATcc                                                                                                                                                                       <  1:810941/251‑2 (MQ=255)

                                                    tAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATcc                                                                                                                                                                       <  1:347242/251‑2 (MQ=255)

                                                    tAACAACACAATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATc                                                                                                                                                                        <  1:740739/250‑1 (MQ=255)

                                                       caacacaATCAATGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAgg                                                                                                                                                                    >  1:218601/3‑251 (MQ=255)

                                                            caatcaatGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAAcc                                                                                                                                                                                            >  1:85004/1‑222 (MQ=255)

                                                            caatcaatGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTaaaa                                                                                                                                                               >  1:35172/1‑251 (MQ=255)

                                                            caatcaatGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTaaaa                                                                                                                                                               >  1:246385/1‑251 (MQ=255)

                                                             aatcaatGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCTTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACcagg                                                                                                                                                                                         >  1:328955/1‑222 (MQ=255)

                                                             aatcaatGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCGAAGCTCTGCTCGGTTGAGAtt                                                                                                                                                                                                                          >  1:447033/1‑191 (MQ=255)

                                                             aatcaatGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGGGATTGCACCCAGa                                                                                                                                                                                                                 >  1:770884/1‑200 (MQ=255)

                                                                  atGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAAttcgg                                                                                                                                                         >  1:151433/1‑248 (MQ=255)

                                                                  atGGTGGGCGAGCCCTGCATGCCGACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAAttcgg                                                                                                                                                         >  1:493737/1‑248 (MQ=255)

                                                                                         gACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCACCACCGACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGAtt                                                                                                                                     >  1:445356/1‑251 (MQ=255)

                                                                                         gACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAAcc                                                                                                                                                                                            >  1:380494/1‑193 (MQ=255)

                                                                                         gACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCg                                                                                                                                                       >  1:578037/1‑230 (MQ=255)

                                                                                         gACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTgg                                                                                                                                   >  1:297105/1‑250 (MQ=255)

                                                                                         gACGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTgg                                                                                                                                   >  1:638576/1‑250 (MQ=255)

                                                                                           cGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCg                                                                                                                                            >  1:744435/1‑239 (MQ=255)

                                                                                           cGTTAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTggcgg                                                                                                                                >  1:559087/1‑248 (MQ=255)

                                                                                             ttAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTggcggg                                                                                                                               <  1:389224/250‑5 (MQ=255)

                                                                                              tAACTGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCg                                                                                                                                            >  1:726682/1‑236 (MQ=255)

                                                                                                    tCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATcc                                                                                                                       <  1:116600/251‑1 (MQ=255)

                                                                                                    tCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATc                                                                                                                        <  1:458040/250‑1 (MQ=255)

                                                                                                          ttttAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCgtatggg                                                                                                                                                                                                    >  1:745548/1‑163 (MQ=255)

                                                                                                                   ccAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCg                                                                                                        <  1:273973/251‑1 (MQ=255)

                                                                                                                        gggTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATc                                                                                                                                                                        <  1:756891/182‑1 (MQ=255)

                                                                                                                        gggTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAAt                                                                                                                                                             >  1:116033/1‑193 (MQ=255)

                                                                                                                         ggTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGcc                                                                                                         <  1:382625/244‑1 (MQ=255)

                                                                                                                         ggTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATaaaa                                                                                                  >  1:603219/1‑251 (MQ=255)

                                                                                                                         ggTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGGAACATCCGCTTCGAGATTGCCGATaaa                                                                                                   >  1:710627/1‑250 (MQ=255)

                                                                                                                          gTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATaaac                                                                                                  <  1:725378/250‑2 (MQ=255)

                                                                                                                          gTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATaaac                                                                                                  <  1:417005/250‑2 (MQ=255)

                                                                                                                          gTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATaaac                                                                                                  <  1:754495/250‑2 (MQ=255)

                                                                                                                          gTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATaaac                                                                                                  <  1:878792/250‑2 (MQ=255)

                                                                                                                             aaaTATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATc                                                                                                                                                                        >  1:679834/1‑177 (MQ=255)

                                                                                                                             aaaTATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGGAACATCCGCTTCGAGAATGCCGATaaaa                                                                                                  >  1:270999/1‑247 (MQ=255)

                                                                                                                                  tGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCGGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATaaac                                                                                                  <  1:12970/242‑2 (MQ=255)

                                                                                                                                        aTGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATAAACTGCGCGTTATAGa                                                                                     >  1:553595/1‑249 (MQ=255)

                                                                                                                                        aTGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATAAACTGCGCGTTATAGAc                                                                                    <  1:224147/250‑1 (MQ=255)

                                                                                                                                        aTGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATAAACTGCGCGTTATAGACt                                                                                   <  1:627341/251‑1 (MQ=255)

                                                                                                                                                  ctctAACTTAATCCCCTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGGAACATCCGCTTCGAGATTGCCGATAAAATGCGCGTTATAGACTTTAAACggag                                                                         >  1:622400/1‑249 (MQ=255)

                                                                                                                                                                ccTCACCAC‑‑CG‑ACAACAGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTTCCGATAAACTGCGCGTTATAGACTTTAAACGGAGTTTTTATGCGCCAt                                                           >  1:371222/1‑251 (MQ=255)

                                                                                                                                                                          cccgacaacaGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATGACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATAAACTGCGCGTTATAGACTTTAAACGGAGTTTTAATGCGCCATTTATCAc                                                    <  1:376054/247‑1 (MQ=255)

                                                                                                                                                                          cccgacaacaGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATAAACTGCGCGTTATAGACTTTAAACGGAGTTTTAATGCGCCATTTATCAc                                                    <  1:892695/247‑1 (MQ=255)

                                                                                                                                                                          accgacaacaGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATAAACTGCGCGTTATAGACTTTAAACGGAGTTTTAATGCGCCATTTATCAc                                                    <  1:740705/247‑1 (MQ=255)

                                                                                                                                                                          accgacaacaGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATAAACTGCGCGTTATAGACTTTAAACGGAGTTTTAATGCGCCATTTATCAc                                                    <  1:49904/247‑1 (MQ=255)

                                                                                                                                                                               caacaGACACCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGGAACATCCGCTTCGAGATTGCCGATAAACTGCGCGTTATAGACTTTAAAAGGAGGTTTAATGCGCCATTTATCACTGCgg                                               >  1:196776/1‑251 (MQ=255)

                                                                                                                                                                                     acacCGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATAAACTGCGCGTTATAGACTTTAAACGGAGTTTTAATGCGCCATTTATCACTGCGGTAg                                            <  1:742056/248‑1 (MQ=255)

                                                                                                                                                                                        ccGATAAAAGCTTGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATAAACTGCGCGTTATAGACTTTAAACGGAGTTTTAATGCGCCATTTATCACTGCGGTAGGTGAcc                                      <  1:468044/251‑1 (MQ=255)

                                                                                                                                                                                               aagcttGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATAAACTGCGCGTTATAGACTTTAAACGGAGTTTTAATGCGCCATTTATCACTGCGGTAGGTGACCAGTCCgg                               <  1:171243/247‑1 (MQ=255)

                                                                                                                                                                                               aagcttGACCGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATAAACTGCGCGTTATAGACTTTAAACGGAGTTTTAATGCGCCATTTATCACTGCGGTAGGTGACCAGGCCgg                               >  1:506117/5‑251 (MQ=255)

                                                                                                                                                                                                       ccGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATAAACTGCGCGTTATAGACTTTAAACGGAGTTTTAATGCGCCATTTATCACTGCGGTAGGTGACCAGTCCGGTTTTAaat                       <  1:591431/251‑1 (MQ=255)

                                                                                                                                                                                                       ccGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATAAACTGCGCGTTATAGACTTTAAACGGAGTTTTAATGCGCCATTTATCACTGCGGTAGGTGACCAGTCCGGTTTTAaat                       <  1:345803/251‑1 (MQ=255)

                                                                                                                                                                                                       ccGCGCTGCGGTTGGCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACAGCCGCTTCGAGATTGCCGATAAACTGCGCGTTATAGACTTTAAACGGAGTTTTAATGCGCCATTTATCACTGCGGTAGGTGACCAGTCCGGTTTTAaat                       <  1:656635/251‑1 (MQ=255)

                                                                                                                                                                                                                     gCGTTCCACACTTGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATAAACTGCGCGTTATAGACTTTAAACGGAGTTTTAATGCGCCATTTATCACTGCGGTAGGTGACCAGTCCGGGTTTAAATAATGCCGTACCgg          >  1:474888/1‑250 (MQ=255)

                                                                                                                                                                                                                            acacttGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATAAACTGCGCGTTATAGACTTTAAACGGAGTTTTAATGCGCCATTTATCACTGCGGTAGGTGACCAGTCCGGTTTTAAATAATGCCGTACCGGCGTTAAGc  <  1:542499/247‑1 (MQ=255)

                                                                                                                                                                                                                            acacttGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGTAACATCCGCTTCGAGATTGCCGATAAACTGCGCGTTATAGACTTTAAACGGAGTTTTAATGCGCCATTTATCACTGCGGTAGGTGACCAGTCCGGTTTTAAATAATGCCGTACCGGCGTAAAGc  <  1:783838/247‑1 (MQ=255)

                                                                                                                                                                                                                               cttGCACGCCAAAGCTCTGCTCGGTTGAGATTGCACCCAGATTTACCGTATGGGGAATAACCAGGATGCGCCGATATAAATCCAGGTAAAAATTCGGCGTGATATAACCGCCCGATTGGCGGGGAACATCCCCTTCGAGATTTCCGATAAACTGCGCGTTATAGACTTTAAACGGAGTTTTAATGCGCCATTTATCACTGCGGTAGGGGACCAGTCCGGTTTTAAATAATGCCGTACCGGCGTTAAGc  >  1:46060/2‑248 (MQ=255)

||

CGCGAGCCTATAATGCGCAGGGTAACTGCACTTTTACCCAAAAAATTAAAGGTAACCACACAATCAATGGTGGGCGCGCCTTGCATGCCGACGTTAACCGTCCATTTTTTAAGCGCCAGCGGGTTAAATATGCCTGATGTCGGCCCCTCTAACTTAATCCCCTCACCAC‑‑CC‑ACAACAGACACCGATAAAAGTTTGACCGCGCTGCGGTTGGCGTTCCAAATTTGCACGTTAAAGGTCTGGTCGGTAGAGATTGCACCCAGATTTACCGTGTGCGGGATAACCACAATGCGGCGATATAAATCAAGGTAAAAATTGGGCGTGATATAACCGCCCGATTGGTGCGTAACATCCGCTTCTTGATTGCCGATAAAATGCGCGTTATAGACTTTAAACGGGGCTTTAATCCGCCATTTATCACTGCGGTAGGTGACCAGTCCGGTTTTAAATAATGCCGTACCGGCGTTAAGC  >  1/93372‑93839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`