| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,620,318 | G→A | A461A (GCG→GCA) | unknown → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,620,318 | 0 | G | A | 98.8% | 228.1 / NA | 81 | A461A (GCG→GCA) | unknown | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (43/37); minor base C (0/1); total (43/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCCGTGAGCAGGAAATTGCCCGTCAAAAAGCGGTGGAAGAAGAACGCCAACGCGCTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCGCCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAAC > 1/1620077‑1620562 | cccGTGAGCAGGAAATTGCCCGTCAAAAAGCGGTGGAAGAAGAACGCCAACGCGCTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGAt < 1:174024/251‑1 (MQ=255)cccGTGAGCAGGAAATTGCCCGTCAAAAAGCAGTGGAAGAAGAACGCCAACGCGCTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGAt < 1:514678/251‑1 (MQ=255) ccGTGAGCAGGAAATTGCCCGTCAAAAAGCGGTGGAAGAAGAACGCCAACGCGCTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATc < 1:139730/251‑1 (MQ=255) ccGTGAGCAGGAAATTGCCCGTCAAAAAGCGGTGGAAGAAGAACGCCAACGCGCTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATc < 1:151720/251‑1 (MQ=255) gTGAGCAGGAAATTGCCCGTCAAAAAGCGGTGGAAGAAGAACGCCAACGCGCTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGAt < 1:352063/248‑1 (MQ=255) aaaTTGCCCGTCAAAAAGCGGTGGAAGAAGAACGCCAACGCGCTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGAt < 1:304213/239‑1 (MQ=255) aaaTTGCCCGTCAAAAAGCGGTGGAAGAAGAACGCCAACGCGCTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAgg < 1:12215/246‑1 (MQ=255) cccGTCAAAAAGCGGTGGAAGAAGAACGCCAACGCGCTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAgg < 1:114041/250‑1 (MQ=255) ccGTCAAAAAGCGGTGGAAGAAGAACGCCAACGCGCTATTGAAGCGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGgag < 1:848430/251‑1 (MQ=255) gTCAAAAAGCGGTGGAAGAAGAACGCCAACGCGCTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGaa > 1:463472/1‑251 (MQ=255) aaaGCGGTGGAAGAAGAACGCCAACGCGCTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAg < 1:381218/251‑1 (MQ=255) gTGGAAGAAGAACGCCAACGCGCTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGAt > 1:786950/1‑219 (MQ=255) gTGGAAGAAGAACGCCAACGCGCTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAgg > 1:34238/1‑226 (MQ=255) gaagaagaaCGCCAACGCGCTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAgg < 1:617723/223‑1 (MQ=255) aagaaCGCCAACGCGCTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGaaaaa < 1:666987/251‑1 (MQ=255) aagaaCGCCAACGCGCTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGaaaaa < 1:241884/251‑1 (MQ=255) cAACGCGCTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACTGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTAc < 1:442995/251‑1 (MQ=255) cgcTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAg < 1:183387/251‑1 (MQ=255) cTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTg < 1:829749/201‑1 (MQ=255) cTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAAc < 1:159027/221‑1 (MQ=255) cTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAgcg > 1:93601/1‑251 (MQ=255) aTTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGAc > 1:508849/1‑204 (MQ=255) aTTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAgcgc > 1:187124/1‑250 (MQ=255) aTTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAgcgc > 1:404873/1‑250 (MQ=255) aTTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAg > 1:725965/1‑247 (MQ=255) tCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAg > 1:173505/1‑207 (MQ=255) tCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTg < 1:506691/251‑1 (MQ=255) gaagaaAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAgat < 1:584351/248‑1 (MQ=255) gaagaaAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAgat < 1:642150/248‑1 (MQ=255) aagaaAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGAtt < 1:325219/251‑1 (MQ=255) gCCCGTATTGAACGCGAACGTGCCGCACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGCAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCAtgatga > 1:551048/1‑251 (MQ=255) gCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAg < 1:423313/217‑1 (MQ=255) cccGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCa > 1:4710/1‑244 (MQ=255) cccGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGaa > 1:172831/1‑251 (MQ=255) tATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGaaacaa > 1:530641/1‑251 (MQ=255) gAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCGAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACt > 1:436582/1‑250 (MQ=255) gAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACAtt > 1:153433/1‑225 (MQ=255) tGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTaaaa > 1:874578/1‑251 (MQ=255) gTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGa > 1:162361/1‑199 (MQ=255) gCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTgcg > 1:462824/1‑249 (MQ=255) cGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGt > 1:674169/1‑251 (MQ=255) cGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGt > 1:856275/1‑251 (MQ=255) cGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGt > 1:315310/1‑251 (MQ=255) gTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTa > 1:772147/1‑251 (MQ=255) gTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTa > 1:183785/1‑251 (MQ=255) tAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGAt < 1:9266/251‑1 (MQ=255) aGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACt < 1:770413/250‑1 (MQ=255) aaaTTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGaaacaa < 1:254435/195‑1 (MQ=255) aaaTTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAAt < 1:159030/249‑1 (MQ=255) aaaTTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAAt < 1:429816/249‑1 (MQ=255) caacaaGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAg > 1:602669/1‑251 (MQ=255) caaGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTaa < 1:794333/251‑1 (MQ=255) ttGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAg < 1:367948/250‑1 (MQ=255) ttGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAg < 1:836682/250‑1 (MQ=255) ccGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGt < 1:866029/251‑1 (MQ=255) ccGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGt < 1:316864/251‑1 (MQ=255) agaaAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAg > 1:369205/1‑248 (MQ=255) cTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAac > 1:659838/1‑126 (MQ=255) cTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAgat > 1:387968/1‑136 (MQ=255) cTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGc > 1:65629/1‑218 (MQ=255) cTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAg > 1:878428/1‑249 (MQ=255) gTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCtt > 1:81774/1‑250 (MQ=255) ttgctcttatggcccTACCGATTTTACTAGTGATATTGCCCCATTAGATCCTGAAGACAATCCAGGAGAAAACAGTGGTTTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAg < 1:888113/239‑1 (MQ=255) tCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAg > 1:878660/1‑224 (MQ=255) ctctACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGAc < 1:832989/160‑1 (MQ=255) ctACTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGt > 1:44295/1‑250 (MQ=255) aCTGCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGc < 1:156938/251‑1 (MQ=255) gCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCtt > 1:141022/1‑250 (MQ=255) gCCCCTACGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCtt > 1:584514/1‑250 (MQ=255) aCGGATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACga > 1:53874/1‑251 (MQ=255) gATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAgat > 1:871659/1‑104 (MQ=255) gATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAAt < 1:267882/175‑1 (MQ=255) gATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTc > 1:171850/1‑196 (MQ=255) gATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGt > 1:177023/1‑206 (MQ=255) gATTTACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACgaaga > 1:529858/1‑251 (MQ=255) tACCTAGTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACa > 1:388072/1‑251 (MQ=255) gTGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACt < 1:175766/128‑1 (MQ=255) tGATATGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCAt > 1:16399/1‑250 (MQ=255) atatGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCatgat > 1:770816/1‑101 (MQ=255) atatGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCaa > 1:251289/1‑251 (MQ=255) tatGGCACCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACATATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAAc < 1:434046/251‑1 (MQ=255) | CCCGTGAGCAGGAAATTGCCCGTCAAAAAGCGGTGGAAGAAGAACGCCAACGCGCTATTGAAACGCAACGTCAGCAGGAAGAAAATGCCCGTATTGAACGCGAACGTGCCGAACGTGAAGAAGCCGACCGTCTAGCCCGTGAGCAAGAAATTGCAGCTCAACAAGTTGAAGAAAAACCGGAAGAAAGCCCTGTTATTCTTGTTCGCTCTACTGCCCCTACGGATTTACCTAGTGATATGGCGCCATTAGATCTTGAGGACATTCAAGGAGAAAACAGTGGTGTCGAAAAAACCGTTACTGTAGCGCCTAAAGAACACATTGAGATGATTCATGATGAAACAAACTCGGAAACTAAAACTGAAGACGTTGCGCTAAAAGTAGATAGCACACTAGAATCGCAGGAGAGCAGTAACAGTCAGCCTGAAGTAGCTGAACAAGCTTCGGTAGAACAAGTTGTCGCTTCTCACGAAGAAACAGCCCATCAAC > 1/1620077‑1620562 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |