| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,536,556 | A→C | D142E (GAT→GAG) | unknown ← | Stringent starvation protein B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,536,556 | 0 | A | C | 98.8% | 228.8 / NA | 81 | D142E (GAT→GAG) | unknown | Stringent starvation protein B |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base C (39/41); minor base T (1/0); total (40/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.94e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGTGATCCCGTTCCCACGTGCTCCGCGTAACGCAAATTTCTAATTCATCATAAACGTAAAAATCGCCTTGTTTATATAGCAAGGCGATTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTATCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATCCTGAGACACACCACGAAAACGCGCGTTAAATTGAATAAAAT > 1/1536314‑1536782 | atgtgatCCCGTTCCCACGTGCTCCGCGTAACGCAAATTTCTAATTCATCATAAACGTAAAAATCGCCTTGTTTATATAGCAAGGCGATTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGa > 1:816689/1‑251 (MQ=255) tCTAATTCATCATAAACGTAAAAATCGCCTTGTTTATATAGCAAGGCGATTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATc < 1:464204/251‑1 (MQ=255) aaaaTCGCCTTGTTTATATAGCAAGGCGATTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGtt > 1:884762/1‑200 (MQ=255) cGCCTTGTTTATATAGCAAGGCGATTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCttt < 1:435428/212‑1 (MQ=255) gCCTTGTTTATATAGCAAGGCGATTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGgtt > 1:621244/1‑251 (MQ=255) tGTTTATATAGCAAGGCGATTTTTTTATCCTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGAATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTTTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGCCATTTTCAAACCCTGTCGgtttttt > 1:551127/1‑247 (MQ=255) tGTTTATATAGCAAGGCGATTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAATAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGgttgtt > 1:499164/1‑250 (MQ=255) gTTTATATAGCAAGGCGATTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAGCTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGgttgtt > 1:398783/1‑249 (MQ=255) gTTTATATAGCAAGGCGATTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATcc > 1:595042/1‑203 (MQ=255) gTTTATATAGCAAGGCGATTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACgg > 1:292531/1‑225 (MQ=255) ttATATAGCAAGGCGATTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATcc > 1:785699/1‑201 (MQ=255) ttATATAGCAAGGCGATTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCt > 1:134690/1‑219 (MQ=255) ataGCAAGGCGATTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTctgcc < 1:581144/251‑1 (MQ=255) ataGCAAGGCGATTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTctgcc < 1:541982/251‑1 (MQ=255) taGCAAGGCGATTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTctgc > 1:574828/1‑249 (MQ=255) ggCGATTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAg > 1:674022/1‑251 (MQ=255) ggCGATTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAg > 1:139243/1‑251 (MQ=255) aTTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGgt < 1:881278/250‑1 (MQ=255) ttttttATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGtt > 1:33053/1‑251 (MQ=255) tttttATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGc < 1:628331/206‑1 (MQ=255) tttttATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGgt < 1:688178/225‑1 (MQ=255) tttttATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTG‑TTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCa > 1:124719/1‑251 (MQ=255) ataCTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAg < 1:703000/251‑1 (MQ=255) cTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAAcc > 1:38433/1‑210 (MQ=255) cAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTc < 1:341066/251‑1 (MQ=255) gCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCa > 1:587094/1‑251 (MQ=255) gAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAAc < 1:363438/250‑1 (MQ=255) aaaCGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATcac < 1:207965/251‑1 (MQ=255) aCGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCacac < 1:379702/251‑1 (MQ=255) cacTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATc > 1:620585/1‑164 (MQ=255) cacTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATa < 1:827526/218‑1 (MQ=255) cTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATa < 1:612392/216‑1 (MQ=255) cTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCAt < 1:21028/251‑1 (MQ=255) tttGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCAttt < 1:627188/251‑1 (MQ=255) tAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAAc < 1:625857/220‑1 (MQ=255) aCAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAggg > 1:25206/1‑191 (MQ=255) aCAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAAt > 1:899235/1‑250 (MQ=255) tACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAg < 1:565753/251‑1 (MQ=255) cAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAgcgc < 1:264878/251‑1 (MQ=255) gCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATc > 1:545003/1‑126 (MQ=255) cGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCgg < 1:105613/251‑1 (MQ=255) aTCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCAt < 1:719733/174‑1 (MQ=255) aTCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATcac < 1:250650/199‑1 (MQ=255) tttttCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATaaa < 1:808871/251‑1 (MQ=255) tttttCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATaaa < 1:484004/251‑1 (MQ=255) tttttCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATaaa < 1:623598/251‑1 (MQ=255) tttCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAata < 1:394143/251‑1 (MQ=255) ttCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAatat < 1:722484/251‑1 (MQ=255) gtgtTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATc > 1:128857/1‑248 (MQ=255) tgtTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGTATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATcc < 1:726678/248‑1 (MQ=255) gtTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAAcc < 1:141968/126‑1 (MQ=255) gtTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAg < 1:661516/164‑1 (MQ=255) gtTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATCCTgag > 1:181053/1‑251 (MQ=255) ttttttATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATCCTgaga < 1:797780/251‑1 (MQ=255) tttATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATCCTGAGacac < 1:401223/251‑1 (MQ=255) tgatCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCGCCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCgg < 1:617888/221‑1 (MQ=255) atCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATCCTGAGACACACCACGaaaa < 1:841628/250‑1 (MQ=255) tCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAg < 1:275959/148‑1 (MQ=255) aacaacTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATCCTGAGac > 1:509470/1‑234 (MQ=255) aacTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATCCTGAGACACACCACGAAAACGCGCGtt > 1:456101/1‑251 (MQ=255) cTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACCTCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATCCTGAGACACACCACGAAAACGCGCGTTaa > 1:415458/1‑251 (MQ=255) cTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCAttt < 1:888603/175‑1 (MQ=255) cTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCAtt < 1:330616/174‑1 (MQ=255) cTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATCCTgag > 1:568665/1‑227 (MQ=255) cTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATCCTGAGacacac > 1:250840/1‑233 (MQ=255) cTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATCCTGAGacacac > 1:609082/1‑233 (MQ=255) cTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATCCTGAGac < 1:595872/229‑1 (MQ=255) aTTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCt > 1:341524/1‑83 (MQ=255) aTTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACAt > 1:573302/1‑157 (MQ=255) aTTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCa > 1:646322/1‑170 (MQ=255) aTTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGc > 1:404634/1‑196 (MQ=255) aTTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAg > 1:770709/1‑198 (MQ=255) aTTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATaaa < 1:264999/216‑1 (MQ=255) aTTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATCCTGAGac > 1:719538/1‑227 (MQ=255) aTTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATCCTGAGACACACCACGaaaa > 1:149451/1‑239 (MQ=255) aTTTTACAATGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATCCTGAGACACACCACGaaaa < 1:611997/239‑1 (MQ=255) aTGCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGc < 1:775290/188‑1 (MQ=255) gCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTctgcc > 1:682255/1‑109 (MQ=255) gCGTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATCCTGAGACACACCACGAAAACGCGCGTTAAATTGAATAAAAt > 1:515927/1‑251 (MQ=255) gTAAATGGGAGGTGGATTTTTTCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAAt > 1:188166/1‑175 (MQ=255) ttttCTCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATaaa > 1:179777/1‑186 (MQ=255) | ATGTGATCCCGTTCCCACGTGCTCCGCGTAACGCAAATTTCTAATTCATCATAAACGTAAAAATCGCCTTGTTTATATAGCAAGGCGATTTTTTTATACTTTCAAAACTGCCGGAAAAAACGACCACACTTTTGTTTCCCCGATAACAAAAAAGATACCAAAGTGCGGTATCTTTTTTCAGTGTTTTTTATTTGATGATCGAACAACTATTTTACAATGCGTAAATGGGAGGTGGATTTTTTATCGCCTGATTTTGGTTTATCCGATTTATCCTTTTGATCCGCTTTATCTACGGCATTTTCAAAACCTGTCGGTTGTTCTTCTGCCTGCTCAGGGTGTTCATAAGCGGCTTCAGGTTCAAACATCACACCGTCACCATTTTCACGGGCATAAATCGCTAATGCAGCGCCAAGCGGAATATAAATATCCTGAGACACACCACGAAAACGCGCGTTAAATTGAATAAAAT > 1/1536314‑1536782 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |