Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 49,004 A→G K11E (AAA→GAA)  unknown → hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*149,0040AG100.0% 173.6 / NA 58K11E (AAA→GAA) unknownhypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (24/34);  total (24/34)

CCAGCCACGTCAGTAGTTCACCGTCAAAATAAATCGCATCTTGCGGCGACACTTTGGTCGCCCCGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGAAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGGTGTTTTTTCACCCTATTATTCAAAAAAGAGGATTTATTTTATGGATGAACAACTTAAAAAAGCCGCACTCGATTTTCATGAATTTCCGATTCCGGGGAAAATTGAAGTTACTCCGACAAAATCTCTTGCAACCCAACGC  >  1/48761‑49247
                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                   
ccAGCCACGTCAGTAGTTCACCGTCAAAATAAATCGCATCTTGCGGCGACACTTTGGTCGCCCCGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAacc                                                                                                                                                                                                                                              <  1:806217/251‑1 (MQ=255)
     cACGTCAGTAGTTCACCGTCAAAATAAATCGCATCTTGCGGCGACACTTTGGTCGCCCCGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCg                                                                                                                                                                                                                                          >  1:882689/1‑250 (MQ=255)
       cGTCAGTAGTTCACCGTCAAAATAAATCGCATCTTGCGGCGACACTTTGGTCGCCCCGCTCTTCTCAATTTTACCGTTAATTGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCAc                                                                                                                                                                                                                                       <  1:453065/251‑1 (MQ=255)
       cGTCAGTAGTTCACCGTCAAAATAAATCGCATCTTGCGGCGACACTTTGGTCGCCCCGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCa                                                                                                                                                                                                                                        >  1:805886/1‑250 (MQ=255)
       cGTCAGTAGTTCACCGTCAAAATAAATCGCATCTTGCGGCGACACTTTGGTCGCCCCGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCAc                                                                                                                                                                                                                                       <  1:881598/251‑1 (MQ=255)
             tagtTCACCGTCAAAATAAATCGCATCTTGCGGCGACACTTTGGTCGCCCCGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACttt                                                                                                                                                                                                                                    <  1:159632/248‑1 (MQ=255)
                       tCAAAATAAATCGCATCTTGCGGCGACACTTTGGTCGCCCCGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACaa                                                                                                                                                                                                                       <  1:180878/251‑1 (MQ=255)
                        cAAAATAAATCGCATCTTGCGGCGACACTTTGGTCGCCCCGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAAc                                                                                                                                                                                                                      <  1:132275/251‑1 (MQ=255)
                        cAAAATAAATCGCATCTTGCGGCGACACTTTGGTCGCCCCGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAAc                                                                                                                                                                                                                      <  1:287840/251‑1 (MQ=255)
                          aaataaatCGCATCTTGCGGCGACACTTTGGTCGCCCCGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCa                                                                                                                                                                                                                    >  1:195045/1‑251 (MQ=255)
                              aaatCGCATCTTGCGGCGACACTTTGGTCGCCCCGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATcca                                                                                                                                                                                                                >  1:810795/1‑251 (MQ=255)
                                       cTTGCGGCGACACTTTGGTCGCCCCGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGaaaa                                                                                                                                                                                                       <  1:894222/251‑1 (MQ=255)
                                                acacTTTGGTCGCCCCGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAgg                                                                                                                                                                                               <  1:767892/250‑1 (MQ=255)
                                                 cacTTTGGTCGCCCCGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGaa                                                                                                                                                                                             <  1:827594/251‑1 (MQ=255)
                                                      tGGTCGCCCCGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAAtgtgt                                                                                                                                                                                        <  1:591902/251‑1 (MQ=255)
                                                      tGGTCGCCCCGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAAtgtgt                                                                                                                                                                                        <  1:392801/251‑1 (MQ=255)
                                                            ccccGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAat                                                                                                                                                                                   <  1:110238/250‑1 (MQ=255)
                                                            ccccGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTGTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAat                                                                                                                                                                                   <  1:787874/250‑1 (MQ=255)
                                                                 ctctTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGTTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATcac                                                                                                                                                                              <  1:436425/250‑1 (MQ=255)
                                                                 ctctTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATcac                                                                                                                                                                              <  1:815586/250‑1 (MQ=255)
                                                                  tcttctCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAg                                                                                                                                                                            <  1:45673/251‑1 (MQ=255)
                                                                   cttctCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATccac                                                                                                                                                                                                               <  1:638434/215‑1 (MQ=255)
                                                                          aTTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTc                                                                                                                                                                                                                           >  1:892052/1‑196 (MQ=255)
                                                                                     aaTCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAg                                                                                                                                                                            >  1:380569/1‑232 (MQ=255)
                                                                                     aaTCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTaa                                                                                                                                                          <  1:397429/250‑1 (MQ=255)
                                                                                     aaTCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAAt                                                                                                                                                         >  1:325326/1‑251 (MQ=255)
                                                                                             ccGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAatat                                                                                                                                                 <  1:557830/251‑1 (MQ=255)
                                                                                                cACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAgg                                                                                                                                                                                               <  1:81347/202‑1 (MQ=255)
                                                                                                  ccTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGgt                                                                                                                                            >  1:362161/1‑251 (MQ=255)
                                                                                                             cGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATGACAGAATTCTTTTGGAATTTAATTATAATATTTGGTGTTTTTTCAcc                                                                                                                                 <  1:386020/251‑1 (MQ=255)
                                                                                                              gCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGGTGTTTTTTCAcc                                                                                                                                 >  1:225809/1‑250 (MQ=255)
                                                                                                                                cGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAat                                                                                                                                                                                   >  1:374491/1‑182 (MQ=255)
                                                                                                                                  ggTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTccc                                                                                                                                                                                                                                 >  1:873318/1‑134 (MQ=255)
                                                                                                                                  ggTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAGTGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGGTGTTTTTTCACCCTATTATTc                                                                                                                        >  1:423123/1‑239 (MQ=255)
                                                                                                                                  ggTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTgg                                                                                                                                                                 >  1:299451/1‑198 (MQ=255)
                                                                                                                                  ggTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAatat                                                                                                                                                 <  1:634458/214‑1 (MQ=255)
                                                                                                                                  ggTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGGTGTTTTTTCACCCTATTATTCAAAAAAGAGGat                                                                                                            >  1:575070/1‑251 (MQ=255)
                                                                                                                                         cccGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAAc                                                                                                                                                                                                                      <  1:583669/138‑1 (MQ=255)
                                                                                                                                         cccGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAAc                                                                                                                                                                                                                      <  1:818010/138‑1 (MQ=255)
                                                                                                                                         cccGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAAc                                                                                                                                                                                                                      <  1:12730/138‑1 (MQ=255)
                                                                                                                                                                      tCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTataa                                                                                                                                                    >  1:275751/1‑175 (MQ=255)
                                                                                                                                                                      tCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGgtg                                                                                                                                           >  1:453477/1‑184 (MQ=255)
                                                                                                                                                                               gATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGGTGTTTTTTCACCCTATTATTCAAAAAAGAGGATTTATTTTATGGATGAACAACTTAAAAAAGCCGCACTCGAttt                                                                  >  1:319974/1‑248 (MQ=255)
                                                                                                                                                                                 tCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGGTGTTTTTTCACCCTATTATTCAAAAAAGAGGATTTATTTTATGGATGAACAACTTaaaaa                                                                                 >  1:680276/1‑231 (MQ=255)
                                                                                                                                                                                           ttcCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGGTGTTTTTTCACCCTATTATTCAAAAAAGAGGATTTATTTTATGGATGAACAACTTAAAAAAGCCGCACTCGATTTTCATGAATTTCCGAt                                                   >  1:185920/1‑251 (MQ=255)
                                                                                                                                                                                            tcCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGGTGTTTTTTCACCCTATTATTCAAAAAAGAGGATTTATTTTATGGATGAACAACTTAAAAAAGc                                                                              <  1:874382/223‑1 (MQ=255)
                                                                                                                                                                                                tACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAat                                                                                                                                                                                   >  1:651696/1‑118 (MQ=255)
                                                                                                                                                                                                      cATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAatcatc                                                                                                                                                                                                  >  1:72486/1‑97 (MQ=255)
                                                                                                                                                                                                        ttATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGgtg                                                                                                                                           <  1:540308/150‑1 (MQ=255)
                                                                                                                                                                                                        ttATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGGTGTTTTTTCACCCTATTATTCAAAAAAGAGGATTTATTTTATGGATGAACAACTTAAAAAAGCCGCACTCGATTTTCATGAATTTCCGATTCCGGGGAAAAtt                                      >  1:547276/1‑251 (MQ=255)
                                                                                                                                                                                                            aaaCCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGGTGTTTTTTCACCCTATTATTCAAAAAAGAGGATTTATTTTATGGATGAACAACTTAAAAAAGCCGCACTCGATTTTCATGAATTTCCGATTCCGGGGAAAATTGAAg                                  <  1:244694/251‑1 (MQ=255)
                                                                                                                                                                                                              aCCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGGTGTTTTTTCACCCTATTATTCAAAAAAGAGGATTTATTTTATGGATGAACAACTTAAAAAAGCCGCACTCGATTTTCATGAATTTCCGATTCCGGGGAAAATTGAAGtt                                <  1:654363/251‑1 (MQ=255)
                                                                                                                                                                                                                  aaaTTGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATTATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGGTGTTTTTTCACCCTATTATTCAAAAAAGAGGATTTATTTTATGGATGAACAACTTAAAAAAGCCGCACTCGATTTTCATGAATTTCCGATTCCGGGGAAAATTGAAGTTACTc                            <  1:446725/251‑1 (MQ=255)
                                                                                                                                                                                                                      tGACTTTCCTGCCTGATGAAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGGTGTTTTTTCACCCTATTATTCAAAAAAGAGGATTTATTTTATGGATGaacaa                                                                                         <  1:251474/186‑1 (MQ=255)
                                                                                                                                                                                                                                    gatgaAAAACATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTataa                                                                                                                                                    >  1:750256/1‑113 (MQ=255)
                                                                                                                                                                                                                                        aaaaaCATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGGTGTTTTTTCACCCTATTATTCAAAAAAGAGGATTTATTTTATGGATGAACAACTTAAAAAAGCCGCACTCGATTTTCATGAATTTCCGATTCCGGGGAAAATTGAAGTTACTCCGACAAAATCTCTTGCAAccc       <  1:416277/250‑1 (MQ=255)
                                                                                                                                                                                                                                            aCATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAAtgtgt                                                                                                                                                                                        >  1:104781/1‑69 (MQ=255)
                                                                                                                                                                                                                                            aCATTTGGAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGGTGTTTTTTCACCCTATTATTCAAAAAAGAGGATTTATTTTATGGATGAACAACTTAAAAAAGCCGCACTCGATTTTCATGAATTTCCGATTCCGGGGAAAATTGAAGTTACTCCGACAAAATCTCTTGCAACCCAAcgc  <  1:23318/251‑1 (MQ=255)
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CCAGCCACGTCAGTAGTTCACCGTCAAAATAAATCGCATCTTGCGGCGACACTTTGGTCGCCCCGCTCTTCTCAATTTTACCGTTAATCGTAACCGCACCTTGACGCAACGCCTTAGTCGCCTGCGAACGGGTCAGCCCCGTATGCTCTGCTAAAAATTTATCTAATCGCATAATGATCCTTTTCTTTTCCTTACCCGCATTATAAACCCAAATTGACTTTCCTGCCTGATGAAAAACATTTGAAAAAACCACCGCACTTTCCCTCATTCACAACCATCCACCAAGAAAATCATCAGGAATGTGTGAAATATCACAGAATTCTTTTGGAATTTAATTATAATATTTGGTGTTTTTTCACCCTATTATTCAAAAAAGAGGATTTATTTTATGGATGAACAACTTAAAAAAGCCGCACTCGATTTTCATGAATTTCCGATTCCGGGGAAAATTGAAGTTACTCCGACAAAATCTCTTGCAACCCAACGC  >  1/48761‑49247

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑