Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 1,371,409 A→G V104V (GTA→GTG)  unknown → LSU rRNA pseudouridine(2605) synthase (EC 5.4.99.22)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*11,371,4090AG100.0% 160.0 / NA 59V104V (GTA→GTG) unknownLSU rRNA pseudouridine(2605) synthase (EC 5.4.99.22)
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (30/29);  total (30/29)

CGCGTCCGATCAGCAGCGCAAGCAAAACCTCCGCGGCAGAAGGCGAAAAATTACAAAAAGTGTTAGCCCGTGCAGGACAAGGTTCGCGCCGTGAAATCGAAGCTATTATTGCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTAT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCAACCGCTTAATGCACCCGAGCCGTGAAGTGGAGCGCGAATATTCCGTGCGTGTGTTCGGGCAAGTG  >  1/1371174‑1371655
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                        
cgcgTCCGATCAGCAGCGCAAGCAAAACCTCCGCGGCAGAAGGCGAAAAATTACAAAAAGTGTTAGCCCGTGCAGGACAAGGTTCGCGCCGTGAAATCGAAGCTATTATTGCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATg                                                                                                                                                                                                                                         <  1:12827/251‑1 (MQ=255)
cgcgTCCGATCAGCAGCGCAAGCAAAACCTCCGCGGCAGAAGGCGAAAAATTACAAAAAGTGTTAGCCCGTGCAGGACAAGGTTCGCGCCGTGAAATCGAAGCTATTATTGCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATg                                                                                                                                                                                                                                         <  1:624977/251‑1 (MQ=255)
                cgcAAGCAAAACCTCCGCGGCAGAAGGCGAAAAATTACAAAAAGTGTTAGCCCGTGCAGGACAAGGTTCGCGCCGTGAAATCGAAGCTATTATTGCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCgg                                                                                                                                                                                                                            <  1:897230/248‑1 (MQ=255)
                    agcaaAACCTCCGCGGCAGAAGGCGAAAAATTACAAAAAGTGTTAGCCCGTGCAGGACAAGGTTCGCGCCGTGAAATCGAAGCTATTATTGCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACaa                                                                                                                                                                                                                                 <  1:351307/239‑1 (MQ=255)
                      caaAACCTCCGCGGCAGAAGGCGAAAAATTACAAAAAGTGTTAGCCCGTGCAGGACAAGGTTCGCGCCGTGAAATCGAAGCTATTATTGCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGc                                                                                                                                                                                                                   <  1:31853/251‑1 (MQ=255)
                       aaaaCCTCCGCGGCAGAAGGCGAAAAATTACAAAAAGTGTTAGCCCGTGCAGGACAAGGTTCGCGCCGTGAAATCGAAGCTATTATTGCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCt                                                                                                                                                                                                                  <  1:398165/251‑1 (MQ=255)
                                gcgGCAGAAGGCGAAAAATTACAAAAAGTGTTAGCCCGTGCAGGACAAGGTTCGCGCCGTGAAATCGAAGCTATTATTGCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCg                                                                                                                                                                                                         >  1:535476/1‑251 (MQ=255)
                                                         aaGTGTTAGCCCGTGCAGGACAAGGTTCGCGCCGTGAAATCGAAGCTATTATTGCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCt                                                                                                                                                                                                                  <  1:41633/217‑1 (MQ=255)
                                                           gtgtTAGCCCGTGCAGGACAAGGTTCGCGCCGTGAAATCGAAGCTATTATTGCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTAc                                                                                                                                                                                                                                   <  1:857501/198‑1 (MQ=255)
                                                           gtgtTAGCCCGTGCAGGACAAGGTTCGCGCCGTGAAATCGAAGCTATTATTGCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCAc                                                                                                                                                                                                            >  1:223192/1‑221 (MQ=255)
                                                           gtgtTAGCCCGTGCAGGACAAGGTTCGCGCCGTGAAATCGAAGCTATTATTGCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCAc                                                                                                                                                                                                            >  1:534865/1‑221 (MQ=255)
                                                           gtgtTAGCCCGTGCAGGACAAGGTTCGCGCCGTGAAATCGAAGCTATTATTGCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGAt                                                                                                                                                                                                  >  1:210903/1‑231 (MQ=255)
                                                                    cGTGCAGGACAAGGTTCGCGCCGTGAAATCGAAGCTTTTATTGCGGAAACCCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTACCCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTAAAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCg                                                                                                                                                                     <  1:588805/251‑1 (MQ=255)
                                                                     gTGCAGGACAAGGTTCGCGCCGTGAAATCGAAGCTATTATTGCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGTCATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑Gc                                                                                                                                                                                                                                                     >  1:875958/1‑170 (MQ=255)
                                                                     gTGCAGGACAAGGTTCGCGCCGTGAAATCGAAGCTATTATTGCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGt                                                                                                                                                                    >  1:608494/1‑251 (MQ=255)
                                                                                ggTTCGCGCCGTGAAATCGAAGCTATTATTGCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAg                                                                                                                                                                                                                               >  1:475328/1‑181 (MQ=255)
                                                                                 gTTCGCGCCGTGAAATCGAAGCTATTATTGCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTa                                                                                                                                                        >  1:17671/1‑251 (MQ=255)
                                                                                                              gCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTa                                                                                                                                                                                                                 >  1:402725/1‑165 (MQ=255)
                                                                                                                    aaCCGGGTCAGTGTGGATGGTAAAATTCCCCTTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAAAAGGAAGTGT‑‑GCCGTGTTTTGATGTATTAAAAGGCGGAGGGTGAGCTATGCCCCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGa                                                                                                                     <  1:469223/251‑1 (MQ=255)
                                                                                                                         ggTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTa                                                                                                                >  1:10354/1‑251 (MQ=255)
                                                                                                                             aGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAggg                                                                                                                             >  1:63119/1‑234 (MQ=255)
                                                                                                                              gtgtGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCAc                                                                                                                                                                                                            <  1:515550/154‑1 (MQ=255)
                                                                                                                               tgtgGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTAGGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGGGGGTGAGCTATGCCCCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATAcc                                                                                                           <  1:181665/250‑1 (MQ=255)
                                                                                                                                   gttggaaaaaTTGCCATTTTGGGGGATCGGATTAATGTGTACGCGGGGGTGAATTTGAGTATCGCCGGACTTCTGATTAATTTACCCCAGGCGGAGAGGAAAGTGTCCGGGGTGTGTTGATGTATTCCAAGGCGGGGGTTGACCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTc                                                                                                         <  1:87016/244‑1 (MQ=255)
                                                                                                                                      ggTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACaa                                                                                                                                                                                                                                 >  1:430542/1‑125 (MQ=255)
                                                                                                                                                  ccTTTAGGCGTTCGGATTAATGTGTATGCCGGCTGGAAGGTGCGTATCGACGGACTTCTGATTAATTTACCCAAAGCGAAAAAGGAGGGGT‑‑GCCGTGTTTTGATGTATTAAAAGGCGGAGGGTGGGCAATGCCCCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTAc                                                                                       <  1:542338/250‑1 (MQ=255)
                                                                                                                                                   cTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACg                                                                                      >  1:416983/1‑251 (MQ=255)
                                                                                                                                                   cTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACg                                                                                      >  1:205229/1‑251 (MQ=255)
                                                                                                                                                     ttAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTACCCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTTTTGTTGTATTACAAAGGGGGGGGTGAGCTATGCCCCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGAc                                                                                    <  1:159090/251‑1 (MQ=255)
                                                                                                                                                           gATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAggg                                                                                                                             >  1:65761/1‑204 (MQ=255)
                                                                                                                                                                gATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGAt                                                                                                                                                                       >  1:256414/1‑157 (MQ=255)
                                                                                                                                                                gATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAAt                                                                         >  1:699428/1‑251 (MQ=255)
                                                                                                                                                                gATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAAt                                                                         >  1:733900/1‑251 (MQ=255)
                                                                                                                                                                     aTGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTACCCCAAGCGAAGAAGGAGGTGT‑‑GCCGTGTGTTGATGTATTACAAGGCGGGGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGcc                                                                    <  1:577216/251‑1 (MQ=255)
                                                                                                                                                                       gtgtATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCaa                                                                  >  1:609199/1‑251 (MQ=255)
                                                                                                                                                                         gtATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACggatttgactgaatttcggttta                                                                >  1:870576/1‑229 (MQ=255)
                                                                                                                                                                                   tgaaaaGTGCGGACCGACGGCCATCGGATAAATTAAACCCAGGCGGAAAAGGAAGTGT‑‑GCGGTTTTTTAATGTATTAAAAGGCGGGGGGAGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCAACCGCTTAATGc                                                       <  1:884737/247‑1 (MQ=255)
                                                                                                                                                                                          tGCGTATCGACGGACATCTGATTAATTTACCCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGGGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCAACCGCTTAATGCACCCGAGc                                               <  1:664044/251‑1 (MQ=255)
                                                                                                                                                                                          tGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAGGTGT‑‑GCCGTGTGTTGATGTATTACAAGGCGGGGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCAACCGCTTAATGCACCCGAGc                                               <  1:832448/251‑1 (MQ=255)
                                                                                                                                                                                           gagtgtcggcgaaCATATGATTAATTTACCCGAAGCGAAGAAGGAAGTGG‑‑GCGGGGTGTTGTTGTTTAACAAGGGGGGGGGTGAGCTAGCCCCCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCAACCGCTTAATGCACCCGAGc                                               <  1:489451/238‑1 (MQ=255)
                                                                                                                                                                                             gtagcgcaggACTTCTGATTAATTTACCCCAGGCGCAGAGGGAAGTGT‑‑GCCGTGTGTTGATGTTTTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATg                                                                               <  1:487023/208‑1 (MQ=255)
                                                                                                                                                                                                   aCGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCAACCGCTTAAt                                                         <  1:491381/232‑1 (MQ=255)
                                                                                                                                                                                                        cATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCAACCGCTTAATGCACCCGAGCCGTGAAGTGGAgcg                                 >  1:106161/1‑251 (MQ=255)
                                                                                                                                                                                                        cATCTGATTAATTTAACCCAAGCGAAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTTTTACAAGGCGGAGGGTGACCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGAc                                                                                    <  1:435060/200‑1 (MQ=255)
                                                                                                                                                                                                             gATTAATTTACCCCAAGCGCAGAAGGAGGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGAt                                                                                                                                                                       <  1:270565/112‑1 (MQ=255)
                                                                                                                                                                                                             gATTAATTTAACCCAAGCGCAGAGGGAAGTGT‑‑GCGGTGTGTTGATGTATTACAAAGCGGGGGGTGAGCTATGCCCCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGAc                                                                                    <  1:757710/195‑1 (MQ=255)
                                                                                                                                                                                                             gATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCt                                                                                                          >  1:282711/1‑173 (MQ=255)
                                                                                                                                                                                                             gATTAATTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCAACCGCTTAATGCACCCGAGCCGTGAAGTGGAGCGCGAat                            >  1:678835/1‑251 (MQ=255)
                                                                                                                                                                                                                 aaTTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCAACCGCTTAATGCACCCGAGCCGTGAAGTGGAGCGCGAATAtt                         >  1:439197/1‑250 (MQ=255)
                                                                                                                                                                                                                  aTTTAACCCAAGCGCAGAAGGAAGTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCAACCGCTTAATGCACCCGAGCCGTGAAGTGGAg                                   >  1:796366/1‑239 (MQ=255)
                                                                                                                                                                                                                   aaagagacgggcgcAGAAGGAGGGGT‑‑GCGGTGTGTTGATGTATTAAAAGGGGGGGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCAACCGCTTAATGCACCCGAGCCGTGAAGTGGAGCGCGAATATTCcg                      <  1:786199/241‑1 (MQ=255)
                                                                                                                                                                                                                                   aaggaagTGG‑‑GCCGTTTGTTGATGTATTAAAAAGGGGGGGGTGAGCTACGCCCCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCAACCGCTTAATGCACCCGAGCCGTGAAGTGGAGCGCGAATATTCCGTGCGTGTGTTCGGGCa      <  1:835885/251‑1 (MQ=255)
                                                                                                                                                                                                                                     ggaagTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCAACCGCTTAATGCACCCGAGCCGTGAAGTGGAGCGCGAATATTCCGTGCGTGTGTTCGGGCAAg    >  1:880716/1‑251 (MQ=255)
                                                                                                                                                                                                                                      gaagTGT‑‑GCGGTGTTTTGATTTATTACAAAGCGGAGGGTGAGCTATGCGCCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTAc                                                                                       <  1:799355/167‑1 (MQ=255)
                                                                                                                                                                                                                                      gaagTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCCCCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAggg                                                                                                                             <  1:565463/129‑1 (MQ=255)
                                                                                                                                                                                                                                      gaagTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCAACCGCTTAATGCACCCGAGCCGTGAAGTGGAGCGCGAATATTc                        >  1:15613/1‑230 (MQ=255)
                                                                                                                                                                                                                                      gaagTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCAACCGCTTAATGCACCCGAGCCGTGAAGTGGAGCGCGAATATTCCGTGCGTGTGTTCGGGCAAGt   >  1:788379/1‑251 (MQ=255)
                                                                                                                                                                                                                                      gaagTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCAACCGCTTAATGCACCCGAGCCGTGAAGTGGAGCGCGAATATTCCGTGCGTGTGTTCGGGCAAGt   >  1:150376/1‑251 (MQ=255)
                                                                                                                                                                                                                                       aagTGT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCAACCGCTTAATGCACCCGAGCCGTGAAGTGGAGCGCGAATATTCCGTGCGTGTGTTCGGGCAAGTg  >  1:194250/1‑251 (MQ=255)
                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                        
CGCGTCCGATCAGCAGCGCAAGCAAAACCTCCGCGGCAGAAGGCGAAAAATTACAAAAAGTGTTAGCCCGTGCAGGACAAGGTTCGCGCCGTGAAATCGAAGCTATTATTGCGGAAAACCGGGTCAGTGTGGATGGTAAAATTGCCACTTTAGGCGATCGGATTAATGTGTATGCCGGCGTGAAAGTGCGTATCGACGGACATCTGATTAATTTAACCCAAGCGCAGAAGGAAGTAT‑‑GCCGTGTGTTGATGTATTACAAAGCGGAGGGTGAGCTATGCACCCGCCACGATCCGGAAGGGCGCGCCACCGTCTTTGATCGTCTGCCGCGTTTAACCGGCGCCCGCTGGATTGCCGTAGGGCGTTTGGATATTAATACCTCAGGTTTATTGTTATTTACGACAGATGGCGAATTAGCCAACCGCTTAATGCACCCGAGCCGTGAAGTGGAGCGCGAATATTCCGTGCGTGTGTTCGGGCAAGTG  >  1/1371174‑1371655

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑