| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,312,858 | T→C | N372N (AAT→AAC) | unknown → | Type III restriction‑modification system methylation subunit (EC 2.1.1.72) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,312,858 | 0 | T | C | 100.0% | 77.3 / NA | 27 | N372N (AAT→AAC) | unknown | Type III restriction‑modification system methylation subunit (EC 2.1.1.72) |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (16/11); total (16/11) | |||||||||||
ATTTTGAATAAAGATGCAATTTTTTTATCAAGTATTGATGATAATGAGATTATCAATCTGAAAAATATTTTAGATTATACTCTAGGTAAAGATAACTTTATTGATATTTTTTCTTGGCAAAAGATAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAATAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAGGGGTTCTTAAATTTCCTTCAGATATTATTACTACAAAATTACCAGATGGGATTTATAAGGCTGGTATGTACGGCACATCAAGTTATAAAATTGAATTATTAGAAGATACCGAAGTTAAAAATAATAAGTTTATTAAACCTATTGTGTTAAAAGGAAAATTTAAATGGAGCCAAAAATATTTGGATGATTCAATCA > 1/1312631‑1313096 | aTTTTGAATAAAGATGCAATTTTTTTATCAAGTATTGATGATAATGAGATTATCAATCTGAAAAATATTTTAGATTATACTCTAGGTAAAGATAACTTTATTGATATTTTTTCTTGGCAAAAGACAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAAt > 1:482695/1‑251 (MQ=255) aaGATGCAATTTTTTTATCAAGTATTGATGATAATGAGATTATCAATCTGAAAAATATTTTAGATTATACTCTAGGTAAAGATAACTTTATTGATATTTTTTCTTGGCAAAAGACAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGaca < 1:219921/251‑1 (MQ=255) tttttATCAAGTATTGATGATAATGAGATTATCAATCTGAAAAATATTTTAGATTATACTCTAGGTAAAGATAACTTTATTGATATTTTTTCTTGGCAAAAGACAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAgg < 1:6596/251‑1 (MQ=255) tttATCAAGTATTGATGATAATGAGATTATCAATCTGAAAAATATTTTAGATTATACTCTAGGTAAAGATAACTTTATTGATATTTTTTCTTGGCAAAAGACAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAgggg < 1:21840/251‑1 (MQ=255) tttATCAAGTATTGATGATAATGAGATTATCAATCTGAAAAATATTTTAGATTATACTCTAGGTAAAGATAACTTTATTGATATTTTTTCTTGGCAAAAGACAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAgggg < 1:339957/251‑1 (MQ=255) tATTGATGATAATGAGATTATCAATCTGAAAAATATTTTAGATTATACTCTAGGTAAAGATAACTTTATTGATATTTTTTCTTGGCAAAAGACAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAGGGGTTCTTac < 1:733692/249‑2 (MQ=255) gaTTATCAATCTGAAAAATATTTTAGATTATACTCTAGGTAAAGATAACTTTATTGATATTTTTTCTTGGCAAAAGACAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAGGGGTTCTTACATTTCCTTCAGAtatta > 1:70349/1‑251 (MQ=255) cAATCTGAAAAATATTTTAGATTATACTCTAGGTAAAGATAACTTTATTGATATTTTTTCTTGGCAAAAGACAGCCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAGGGGTTCTTACATTTCCTTCAGATATTATtacta < 1:648855/251‑1 (MQ=255) cagatatTTTAGATTATACTCTAGGTAAAGATAACTTTATTGATATTTTTTCTTGGCAAAAGACAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAGGGGTTCTTACATTTCCTTCAGATATTATtactac > 1:127101/4‑244 (MQ=255) atTTTAGATTATACTCTAGGTAAAGATAACTTTATTGATATTTTTTCTTGGCAAAAGACAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAgg > 1:666779/1‑206 (MQ=255) aTTATACTCTAGGTAAAGATAACTTTATTGATATTTTTTCTTGGCAAAAGACAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAgggg > 1:141773/1‑201 (MQ=255) ataCTCTAGGTAAAGATAACTTTATTGATATTTTTTCTTGGCAAAAGACAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGac > 1:890310/1‑184 (MQ=255) aGGTAAAGATAACTTTATTGATATTTTTTCTTGGCAAAAGACAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAgggg > 1:489885/1‑191 (MQ=255) aGGTAAAGATAACTTTATTGATATTTTTTCTTGGCAAAAGACAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAgg > 1:379289/1‑189 (MQ=255) ggTAAAGATAACTTTATTGATATTTTTTCTTGGCAAAAGACAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAGGGGTTCTTACATTTCCTTCAGATATTATTACTACAAAATTACCAGATGGGATTTATAAGGCTgg > 1:805012/1‑251 (MQ=255) aTAACTTTATTGATATTTTTTCTTGGCAAAAGACAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAGGGGTTCTTACATTTCCTTCAGATATTATTACTACAAAATTACCAGATGGGATTTATAAGGCTGGTATGTAc < 1:398852/251‑1 (MQ=255) aTAACTTTATTGATATTTTTTCTTGGCAAAAGACAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAGGGGTTCTTACATTTCCTTCAGATATTATTACTACAAAATTACCAGATGGGATTTATAAGGCTGGTATGTAc < 1:691671/251‑1 (MQ=255) aCTTTATTGATATTTTTTCTTGGCAAAAGACAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAGGGGTTCTTACATTTCCTTCAGATATTATTACTACAAAATTACCAGATGGGATTTATAAGGCTGGTATGTACgg > 1:213946/1‑250 (MQ=255) tAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAGGGGTTCTTACATTTCCTTCAGATATTATTACTACAAAATTACCAGATGGGATTTATAAGGCTGGTATGTACGGCACATCAAGTTATAAAATTGAATTATTAGAAGATACCGAAGTTa > 1:33059/1‑251 (MQ=255) tATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAGGGGTTCTTACATTTCCTTCAGATATTATTACTACAAAATTACCAGATGGGATTTATAAGGCTGGTATGTACGGc > 1:83758/1‑203 (MQ=255) caaacaaaACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAGGGGTTCTTACATTTCCTTCAGATATTATTACTACAAAATTACCAGATGGGATTTATAAGGCTGGTATGTACGGcac < 1:245928/197‑1 (MQ=255) caaTCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAGGGGTTCTTACATTTCCTTCAGATATTATTACTACAAAATTACCAGATGGGATTTATAAGGCTGGTATGTACGGCACATCAAGTTATAAAATTGAATTATTAGAAGATACCGAAGTTAAAAATAATAAGTTTATTAAAcc < 1:491940/251‑1 (MQ=255) cATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAgggg > 1:184402/1‑101 (MQ=255) aGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAGGGGTTCTTACATTTCCTTCAGATATTATTACTACAAAATTACCAGATGGGATTTATAAGGCTGGTATGTACGGCACATCAAGTTATAAAATTGAATTATTAGAAGATACCGAAGTTAAAAATAATAAGTTTATTAAACCTATTGTGTTAAAAGGAAAATTTAAATGGAg > 1:742613/1‑251 (MQ=255) gaataTCTCTTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAGGGGTTCTTACATTTCCTTCAGATATTATTACTACAAAATTACCAGATGGGATTTATAAGGCTGGTATGTACgg > 1:625393/1‑145 (MQ=255) ctctTACTGGTATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAGGGGTTCTTACATTTCCTTCAGATATTATTACTACAAAATTACCAGATGGGATTTATAAGGCTGGTATGTACGGCACATCAAGTTATAAAATTGAATTATTagaaga > 1:859345/1‑172 (MQ=255) tATTAGAAAAAACAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAGGGGTTCTTACATTTCCTTCAGATATGATTACTACAAAATTACCAGATGGGATTTATAAGGCTGGTATGTACGGCACATCAAGTTATAAAATTGAATTATTAGAAGATACCGAAGTTAAAAATAATAAGTTTATTAAACCTATTGTGTTAAAAGGAAAATTTAAATGGAGCCAAAAATATTTGGATGATtcaatca < 1:442962/251‑1 (MQ=255) | ATTTTGAATAAAGATGCAATTTTTTTATCAAGTATTGATGATAATGAGATTATCAATCTGAAAAATATTTTAGATTATACTCTAGGTAAAGATAACTTTATTGATATTTTTTCTTGGCAAAAGATAACCACACCACCTAATTTATCTAAACAAACAAAACAATCTTGCGAATACATTTTAGCTTATCAAAGTGAGAATAGAATATCTCTTACTGGTATTAGAAAAAATAGTAAGAGTTCAAATGGTTTAATGAATCAGACAAACAATATAGGGGTTCTTAAATTTCCTTCAGATATTATTACTACAAAATTACCAGATGGGATTTATAAGGCTGGTATGTACGGCACATCAAGTTATAAAATTGAATTATTAGAAGATACCGAAGTTAAAAATAATAAGTTTATTAAACCTATTGTGTTAAAAGGAAAATTTAAATGGAGCCAAAAATATTTGGATGATTCAATCA > 1/1312631‑1313096 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |