Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	1	1,301,279	A→C	intergenic (‑86/‑15)	unknown ← / → unknown	putative prophage repressor CI/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	1	1,301,279	0	A	C	100.0%	118.7 / NA	40	intergenic (‑86/‑15)	unknown/unknown	putative prophage repressor CI/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (21/19);  total (21/19)

CATTAAACCATTTACTGACCGCTTTGGGTGTTATCTTCAATATGTCGGCAATGATCTTACCTCTGCCTTTTTCCGGCAAATTCTTTCTTTTGCAAGCTATATCAAGTCGCTCGGCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATATAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAATATACAGGCGAGACAAAATATTCAGAAATTCTATCTCAAGCCTTAGAAAACACTGTTTCACCAGAAGAGATTAGAAACTTTAGCAACCCCATTAAGTCATGTT  >  1/1301046‑1301516                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                              cATTAAACCATTTACTGACCGCTTTGGGTGTTATCTTCAATATGTCGGCAATGATCTTACCTCTGCCTTTTTCCGGCAAATTCTTTCTTTTGCAAGCTATATCAAGTCGCTCGGCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTatat                                                                                                                                                                                                                               <  1:663447/250‑1 (MQ=255) cATTAAACCATTTACTGACCGCTTTGGGTGTTATCTTCAATATGTCGGCAATGATCTTACCTCTGCCTTTTTCCGGCAAATTCTTTCTTTTGCAAGCTATATCAAGTCGCTCGGCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATg                                                                                                                                                                                                                              >  1:305525/1‑251 (MQ=255)     aaaCCATTTACTGACCGCTTTGGGTGTTATCTTCAATATGTCGGCAATGATCTTACCTCTGCCTTTTTCCGGCAAATTCTTTCTTTTGCAAGCTATATCAAGTCGCTCGGCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGaaa                                                                                                                                                                                                                          >  1:900461/1‑251 (MQ=255)                      cTTTGGGTGTTATCTTCAATATGTCGGCAATGATCTTACCTCTGCCTTTTTCCGGCAAATTCTTTCTTTTGCAAGCTATATCAAGTCGCTCGGCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACattatt                                                                                                                                                                                                         >  1:783883/1‑251 (MQ=255)                      cTTTGGGTGTTATCTTCAATATGTCGGCAATGATCTTACCTCTGCCTTTTTCCGGCAAATTCTTTCTTTTGCAAGCTATATCAAGTCGCTCGGCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACattatt                                                                                                                                                                                                         >  1:548399/1‑251 (MQ=255)                      cTTTGGGTGTTATCTTCAATATGTCGGCAATGATCTTACCTCTGCCTTTTTCCGGCAAATTCTTTCTTTTGCAAGCTATATCAAGTCGCTCGGCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACattatt                                                                                                                                                                                                         >  1:51222/1‑251 (MQ=255)                                 aTCTTCAATATGTCGGCAATGATCTTACCTCTGCCTTTTTCCGGCAAATTCTTTCTTTTGCAAGCTATATCAAGTCGCTCGGCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAag                                                                                                                                                                                                                                          >  1:135646/1‑207 (MQ=255)                                 aTCTTCAATATGTCGGCAATGATCTTACCTCTGCCTTTTTCCGGCAAATTCTTTCTTTTGCAAGCTATATCAAGTCGCTCGGCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTggg                                                                                                                                                                                              <  1:386631/251‑1 (MQ=255)                                 aTCTTCAATATGTCGGCAATGATCTTACCTCTGCCTTTTTCCGGCAAATTCTTTCTTTTGCAAGCTATATCAAGTCGCTCGGCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTggg                                                                                                                                                                                              <  1:415340/251‑1 (MQ=255)                                   cTTCAATATGTCGGCAATGATCTTACCTCTGCCTTTTTCCGGCAAATTCTTTCTTTTGCAAGCTATATCAAGTCGCTCGGCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAg                                                                                                                                                                                            >  1:807486/1‑251 (MQ=255)                                             tCGGCAATGATCTTACCTCTGCCTTTTTCCGGCAAATTCTTTCTTTTGCAAGCTATATCAAGTCGCTCGGCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAg                                                                                                                                                                                   <  1:225701/250‑1 (MQ=255)                                             tCGGCAATGATCTTACCTCTGCCTTTTTCCGGCAAATTCTTTCTTTTGCAAGCTATATCAAGTCGCTCGGCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGt                                                                                                                                                                                  <  1:820557/251‑1 (MQ=255)                                               ggCAATGATCTTACCTCTGCCTTTTTCCGGCAAATTCTTTCTTTTGCAAGCTATATCAAGTCGCTCGGCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGt                                                                                                                                                                                  >  1:33063/1‑249 (MQ=255)                                                     gATCTTACCTCTGCCTTTTTCCGGCAAATTCTTTCTTTTGCAAGCTATATCAAGTCGCTCGGCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAAtt                                                                                                                                                                          >  1:141647/1‑251 (MQ=255)                                                                                     ttctttTGCAAGCTATATCAAGTCGCTCGGCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATaaa                                                                                                                                          <  1:135952/251‑1 (MQ=255)                                                                                                gCTATATCAAGTCGCTCGGCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATaaa                                                                                                                                          <  1:637072/240‑1 (MQ=255)                                                                                                                  gCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGaa                                                                                                              >  1:465913/1‑250 (MQ=255)                                                                                                                        tCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAat                                                                                                        <  1:765436/250‑1 (MQ=255)                                                                                                                        tCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAat                                                                                                        <  1:525192/250‑1 (MQ=255)                                                                                                                        tCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAat                                                                                                        <  1:362189/250‑1 (MQ=255)                                                                                                                                          tcGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAATATAc                                                                                                    <  1:98180/236‑1 (MQ=255)                                                                                                                                                           tACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAATATACAGGCGAGACAAAATATTCAGAAATTCTAtctc                                                                    <  1:512120/251‑1 (MQ=255)                                                                                                                                                             ccTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTc                                                                                                                         <  1:27523/196‑1 (MQ=255)                                                                                                                                                             ccTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTc                                                                                                                         <  1:243101/196‑1 (MQ=255)                                                                                                                                                             ccTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCAGCTAAAGAGGTTTTATATGGAAAGTGTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAAt                                                                                                                                         <  1:825088/180‑1 (MQ=255)                                                                                                                                                                           gTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAATATACAGGCGAGACAAAATATTCAGAAATTCTATCTCAAGCCTTAGaaa                                                        >  1:625725/1‑247 (MQ=255)                                                                                                                                                                                aTTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAATATACAGGCGAGACAAAATATTCAGAAATTCTATCTCAAGCCTTAGAAAACACTGttt                                               >  1:26251/1‑251 (MQ=255)                                                                                                                                                                                            aCTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAATATACAGGCGAGACAAAATATTCAGAAATTCTATCTCAAGCCTTAGAAAACACTGTTTCACCAGAAgaga                                   >  1:72504/1‑251 (MQ=255)                                                                                                                                                                                                        ttCAGTTCCTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAATATACa                                                                                                   <  1:147636/175‑1 (MQ=255)                                                                                                                                                                                                               ccTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAATATACAGGCGAGACAAAATATTCAGAAATTCTATCTCAAGCCTTAGAAAacac                                                    >  1:222424/1‑215 (MQ=255)                                                                                                                                                                                                               ccTCTTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAATATACAGGCGAGACAAAATATTCAGAAATTCTATCTCAAGCCTTAGAAAACACTGTTTCACCAGAAGAGATTAGAAACTTTAGCAAcc                 >  1:607612/1‑250 (MQ=255)                                                                                                                                                                                                                 tctTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAATATAc                                                                                                    <  1:723984/165‑1 (MQ=255)                                                                                                                                                                                                                  ctTTATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGCATATAc                                                                                                    >  1:685122/1‑164 (MQ=255)                                                                                                                                                                                                                    ttATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTaaaaa                                                                                                                                                                                                                 >  1:472595/1‑53 (MQ=255)                                                                                                                                                                                                                    ttATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAATATACAGGCGAGACAAAATATTCAGAAATTCTATCTCAAGCCTTAGAAAACACTg                                                  >  1:838507/1‑212 (MQ=255)                                                                                                                                                                                                                    ttATAATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAATATACAGGCGAGACAAAATATTCAGAAATTCTATCTCAAGCCTTAGAAAACACTGTTTCACCAGAAGAGATTAGAAAc                           <  1:42666/235‑1 (MQ=255)                                                                                                                                                                                                                       taATGTACTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAATATACAGGCGAGACAAAATATTCAGAAATTCTATCTCAAGCCTTAGAAAACACTGTTTCACCAGAAGAGATTAGAAACTTTAGCAACCCCATTAAGt        <  1:739243/251‑1 (MQ=255)                                                                                                                                                                                                                             aCTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATaaa                                                                                                                                          >  1:94300/1‑115 (MQ=255)                                                                                                                                                                                                                             aCTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAATATACAGGCGAGACAAAATATTCAGAAATTCTATCTCAAGCCTTAGAAAACACTGTTTCACCAGAAGAGATTAGAAACTTTAGCAACCCCATTAAGTCATGtt  >  1:176762/1‑251 (MQ=255)                                                                                                                                                                                                                             aCTTAAAGTTCATCTAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAATATACAGGCGAGACAAAATATTCAGAAATTCTATCTCAAGCCTTAGAAAACACTGTTTCACCAGAAGAGATTAGAAACTTTAGCAACCCCATTAAGTCATGtt  >  1:482437/1‑251 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                              CATTAAACCATTTACTGACCGCTTTGGGTGTTATCTTCAATATGTCGGCAATGATCTTACCTCTGCCTTTTTCCGGCAAATTCTTTCTTTTGCAAGCTATATCAAGTCGCTCGGCAAAGTCTTGTTTAATTTTTTCTTCGCTGATCATTTTTCTTACCTTTGAACTAATGGTTCAATTATAAATAAAACTTGAAGTACTTTCAGTTCCTCTTTATAATGTACTTAAAGTTCATATAAAGAGGTTTTATATGGAAAGTTTAAAAAACATTATTGACTCTTTGGGAGCGGCTAAAGTGGCGAATTTGTGCGGTATTTCCGTTCGTGCTGTTTATAAATGGCGCACATCAAATTCCTTGCCAAGAACTGAATATACAGGCGAGACAAAATATTCAGAAATTCTATCTCAAGCCTTAGAAAACACTGTTTCACCAGAAGAGATTAGAAACTTTAGCAACCCCATTAAGTCATGTT  >  1/1301046‑1301516

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑