New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	1	= 1296454	0 (0.000)	57 (0.660)	43/424	0.7	100%	intergenic (‑1/‑5)	unknown/unknown	hypothetical protein/Putative antirepressor Rha protein (ACLAME 301)
	?	1	= 1297382	0 (0.000)					coding (381/543 nt)	unknown	Phage Rha protein

TGTTTCCGCCTTCGAGCACAAAAGCTTCGCCTCCCAGCGCCCGATCTAAATCAAACGGTTCGGGCTTGTCTTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  1/1296237‑1296454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataCCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATCTTATTGTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATAAGATACATCGGCGGGAGTAGCAGGTAGTCCCGCTTTACGGGGCGGCAAACTTTCCAGTAGCTGCGATTCCCACTGTGGGAAAATTATTAGAAACGCTTTGTCTGTATC  <  1/1297382‑1297132                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGTTTCCGCCTTCCAGTACAAAAGCTTCGCCTCTCAGCGCCCGATCTAAATCAAACGGTTCGGGCTTGTCTTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCT                                                                                                                                                                                                                            <  1:138690/251‑1           ttccagtACAAAAGCTTCGCCTCTCAGCGCCCGATCTAAATCAAACGGTTCGGGCTTGTCTTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCA                                                                                                                                                                                                                  >  1:401627/8‑251           ttccagtACAAAAGCTTCGCCTCTCAGCGCCCGATCTAAATCAAACGGTTCGGGCTTGTCTTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCA                                                                                                                                                                                                                  >  1:83093/8‑251                         CTTCGCCTCTCAGCGCCCGATCTAAATCAAACGGTTCGGGCTTGTCTTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCC                                                                                                                                                                                                    <  1:155340/251‑1                                            ATCTAAATCAAACGGTTCGGGCTTGTCTTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAG                                                                                                                                                                                 >  1:75066/1‑251                                            ATCTAAATCAAACGGTTCGGGCTTGTCTTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCT                                                                                                                                                                                                                            >  1:248483/1‑208                                            ATCTAAATCAAACGGTTCGGGCTTGTCTTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGGGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCGGATTGCCTCATACCGTAATTGCCATTGAAAAACGGGTTTTTTTCTTTTTCATTCAACTTTTTATTTTCCTTTTTTCGGAAATAAAAAG                                                                                                                                                                                 >  1:291177/1‑251                                                  ATCAAACGGTTCGGGCTTGTCTTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCT                                                                                                                                                                                                                            >  1:19921/1‑202                                                          GTTCGGGCTTGTCTTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAG                                                                                                                                                                   >  1:7423/1‑251                                                          GTTCGGGCTTGTCTTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAG                                                                                                                                                                   >  1:115129/1‑251                                                          GTTCGGGCTTGTCTTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTG                                                                                                                                                                                             <  1:773311/225‑1                                                           TTCGGGCTTGTCTTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAG                                                                                                                                                                   <  1:347519/250‑1                                                            TCGGGCTTGTCTTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGG                                                                                                                                                                 <  1:602270/251‑1                                                                   TGTCTTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGG                                                                                                                                                          <  1:540849/251‑1                                                                   TGTCTTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGG                                                                                                                                                          <  1:587067/251‑1                                                                     TCTTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGT                                                                                                                                                         <  1:782192/250‑1                                                                       TTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGG                                                                                                                                                      >  1:869862/1‑251                                                                                CGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGT                                                                                                                                               <  1:833726/249‑1                                                                                    ACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTA                                                                                                                                         >  1:313394/1‑251                                                                                       ACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTT                                                                                                                                      >  1:403018/1‑251                                                                                        CACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTC                                                                                                                                     <  1:832155/251‑1                                                                                                  GTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTT                                                                                                                                                    >  1:93855/1‑226                                                                                                  GTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTT                                                                                                                                                    <  1:222117/226‑1                                                                                                  GTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAG                                                                                                                                                                   >  1:700122/1‑211                                                                                                  GTCCTGGTCAGTCCACTGCAACGACCAATCGCCACCTCTGGCGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGT                                                                                                                           >  1:107583/1‑251                                                                                                    CCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTAT                                                                                                                         <  1:784652/251‑1                                                                                                       GGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGT                                                                                                                                               >  1:708760/1‑226                                                                                                        GTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTG                                                                                                                      <  1:98372/250‑1                                                                                                            GTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAG                                                                                                                 >  1:530863/1‑251                                                                                                            GTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTC                                                                                                                                     <  1:473504/231‑1                                                                                                             TCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAG                                                                                                                 <  1:736135/250‑1                                                                                                                   GCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGAT                                                                                                          >  1:117586/1‑251                                                                                                                      ACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCAACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGC                                                                                                                                                                               >  1:587807/1‑179                                                                                                                        GACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGT                                                                                                                                               >  1:333373/1‑209                                                                                                                             ATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGGCGG                                                                                                >  1:400355/1‑251                                                                                                                              TCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAA                                                                                                                                                                                                                                                       >  1:462870/1‑99                                                                                                                                 TCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGGCGGGAGT                                                                                            <  1:682918/251‑1                                                                                                                                      TCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGGCGGGAGTAGCAG                                                                                       <  1:726462/251‑1                                                                                                                                       CTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGGCGGGAGGAGCAGG                                                                                      >  1:98062/1‑251                                                                                                                                       CTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGG                                                                                                   <  1:508912/238‑1                                                                                                                                        TGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGGCGGGAGTAGCAGGT                                                                                     <  1:669634/251‑1                                                                                                                                        TGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGGCGGGAGTAGCAGGT                                                                                     <  1:801944/251‑1                                                                                                                                         GGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAAC                                                                                                                                                                                                                >  1:837761/1‑127                                                                                                                                             ATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGCAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGGCGGGAGTAGCAGGTAGTCC                                                                                <  1:445063/251‑1                                                                                                                                                   ACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGGCGGGAGTAGCAG                                                                                       <  1:792559/238‑1                                                                                                                                                    CCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGGCGGGAGTAGCAGGGAGTCCCGCcttt                                                                         >  1:701620/1‑247                                                                                                                                                      AAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTC                                                                                                                                     >  1:111321/1‑189                                                                                                                                                             GATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAA                                                                                                                                                                                                                                                       >  1:451445/1‑68                                                                                                                                                                          AGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGGCGGGAGTAGCAGGTAGTCCCGCTTTACGGGGCGGCAAACTTTCCAGT                                                    <  1:857696/250‑1                                                                                                                                                                          AGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGGCGGGAGTAGCAGGTAGTCCCGCTTTACGGGGCGGCAAACTTTCCAGT                                                    <  1:557277/250‑1                                                                                                                                                                                   CACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGAT                                                                                                               >  1:28237/1‑182                                                                                                                                                                                              GTTTACACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGGCGGGAGTAGCAGGTAGTCCCCCTTTACGGGGCGGCAAACTTTTCCGTAGCTGCGATTCCCCCTGTGGG                               >  1:852703/1‑251                                                                                                                                                                                                   CACTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGG                                                                                                                                                          <  1:895696/123‑1                                                                                                                                                                                                     CTTATCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGGCGGGAGTAGCAGGGAGTTCCGCTTTTCGGGGCGGCAAACTTTCCCGTAGCTGCGGTTCCCcc                                     >  1:367973/1‑236                                                                                                                                                                                                         TCCCCCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGGCGGGGGTAGCAGGGAGTCCCGCCTTACGGGGCGGCAAACTTTTCCGTAGCTGCGATTTCCACTGTGGGGAAATTATTAG                    >  1:808589/1‑251                                                                                                                                                                                                             CCGATTGCGTCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGGCGGGAGTAGCAGGTAGTCCCGCTTTACGGGGCGGCAAACTTTCCAGTAGCTGCGATTCCCACTGTGGGAAAATTATTAGAAAC                <  1:327782/251‑1                                                                                                                                                                                                                      TCATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGGCGGGAGTAGCAGGTAGTCCCGCTTTACGGGGCGGCAAACTTTCCAGT                                                    <  1:415556/206‑1                                                                                                                                                                                                                       gATACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGGCGGGAGTAGCAGGTAGTCCCGCTTTACGGGGCGGCAAACTTTCCAGTAGCTGCGATTCCCACTGTGGGAAAA                           <  1:652294/229‑1                                                                                                                                                                                                                          ACCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATTTTATTTTCCTTTTTTGAGTAA‑AAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATACGATACATCGGCGGGAGTAGCAGGTAGTCCCGCTTTACGGGGCGGCAAACTTTCCAGTAGCTGCGATTCCCACTGTGGGAAAATTATTAGAAACGCTTTGTCTGTATC  <  1:891697/251‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TGTTTCCGCCTTCGAGCACAAAAGCTTCGCCTCCCAGCGCCCGATCTAAATCAAACGGTTCGGGCTTGTCTTGCCAAAGCGAGACAACACATGATAGGTCCTGGTCAGTCCACTGCAACGACCAATCGTCACCTCTGGTGATAAGAACCAAATACGGATTATCTCGGTGAGTTTCGCCCACTAACACCAGTTTACACTTATCCCCCGATTGCGTCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  1/1296237‑1296454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataCCGTAATTGCCATTTAAAAACGCGTGTTTTTCTTGTTCATTCAACATCTTATTGTCCTTTTTTGAGTAATAAAAAGGCCCTCACGTGGAGGGCTTGGGGTTGGTTAGGGTTGTTTATTTCTTTGGCTTGTATTTGTCTAGATAAGATACATCGGCGGGAGTAGCAGGTAGTCCCGCTTTACGGGGCGGCAAACTTTCCAGTAGCTGCGATTCCCACTGTGGGAAAATTATTAGAAACGCTTTGTCTGTATC  <  1/1297382‑1297132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.