| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,529,845 | (A)7→8 | intergenic (‑42/‑201) | unknown ← / → unknown | Autoinducer 2 (AI‑2) ABC transporter, dimeric ATP‑binding protein/LsrR, transcriptional repressor of lsr operon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,529,838 | 1 | . | A | 100.0% | 65.1 / NA | 24 | intergenic (‑35/‑208) | unknown/unknown | Autoinducer 2 (AI‑2) ABC transporter, dimeric ATP‑binding protein/LsrR, transcriptional repressor of lsr operon |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (13/11); total (13/11) | |||||||||||
ACCCCGAACCTCCAGTTCTCCGCTATCTTGCGGCTGAATGCCGGCGATAATTTTCATCAGCGTGGATTTCCCCGCCCCGTTACCGCCGAGCAGTGCGTGCACTTCACCGGCATATAAGGAAAAATCAATGGCTTTCAGCACTTCCACGCCGGAAAACGACTTACCGATGTTTCGGGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTT‑AAAAAAACATTTTTTCAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGATAAGATTATCTAAAAATCGCCTTTAATTTTTAAAAAAGTGATCTCCATCATGCTTTTACAAAAAAACGGTAAGAACAATTGATAATAATAAAAAACAAATGAATAATACCCAAAATCAATAAAAACAAATAAATCATATGAACGAATTAATGACGGATAATC > 1/1529588‑1530070 | cccccGAACCTCCAGTTCTGCGCTATCTTGCGGCTGAATGCCGGCGATAATTTTCATCAGCTTGGATTTCCCCGCCCCGTTACCGCCGAGCAGTGCGTGCACTTCACCGGCATATAAGGAAAAATCAATGGCTTTCAGCACTTCCACGCCGGAAAACGACTTACCGATGTTTCGAGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTAttt < 1:314817/250‑1 (MQ=255) aaCCTCCAGTTCTCCGCTATCTTGCGGCTGAATGCCGGCGATAATTTTCATCAGCGTGGATTTCCCCGCCCCGTTACCGCCGAGCAGTGCGTGCACTTCACCGGCATATAAGGAAAAATCAATGGCTTTCAGCACTTCCACGCCGGAAAACGACTTACCGATGTTTCGAGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTT‑aaaaaa > 1:241813/1‑251 (MQ=255) ccAGTTCTCCGCTATCTTGCGGCTGAATGCCGGCGATAATTTTCATCAGCGTGGATTTCCCCGCCCCGTTACCGCCGAGCAGTGCGTGCACTTCACCGGCATATAAGGAAAAATCAATGGCTTTCAGCACTTCCACGCCGGAAAACGACTTACCGATGTTTCGAGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTT‑aaaaaaaacat > 1:29688/1‑247 (MQ=255) tGAATGCCGGCGATAATTTTCATCAGCGTGGATTTCCCCGCCCCGTTACCGCCGAGCAGTGCGTGCACTTCACCGGCATATAAGGAAAAATCAATGGCTTTCAGCACTTCCACGCCGGAAAACGACTTACCGATGTTTCGAGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGaa < 1:741126/251‑1 (MQ=255) gAATGCCGGCGATAATTTTCATCAGCGTGGATTTCCCCGCCCCGTTACCGCCGAGCAGTGCGTGCACTTCACCGGCATATAAGGAAAAATCAATGGCTTTCAGCACTTCCACGCCGGAAAACGACTTACCGATGTTTCGAGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGaa > 1:880307/1‑250 (MQ=255) aaTTTTCATCAGCGTGGATTTCCCCGCCCCGTTACCGCCGAGCAGTGCGTGCACTTCACCGGCATATAAGGAAAAATCAATGGCTTTCAGCACTTCCACGCCGGAAAACGACTTACCGATGTTTCGAGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTc < 1:312919/232‑1 (MQ=255) aTTTCCCCGCCCCGTTACCGCCGAGCAGTGCGTGCACTTCACCGGCATATAAGGAAAAATCAATGGCTTTCAGCACTTCCACGCCGGAAAACGACTTACCGATGTTTCGAGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACaa < 1:659379/250‑1 (MQ=255) ttCCCCGCCCCGTTACCGCCGAGCAGTGCGTGCACTTCACCGGCATATAAGGAAAAATCAATGGCTTTCAGCACTTCCACGCCGGAAAACGACTTACCGATGTTTCGAGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATc < 1:770588/251‑1 (MQ=255) cgccccgTTACCGCCGAGCAGTGCGTGCACTTCACCGGCATATAAGGAAAAATCAATGGCTTTCAGCACTTCCACGCCGGAAAACGACTTACCGATGTTTCGAGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGAt < 1:486868/251‑1 (MQ=255) ccccgTTACCGCCGAGCAGTGCGTGCACTTCACCGGCATATAAGGAAAAATCAATGGCTTTCAGCACTTCCACGCCGGAAAACGACTTACCGATGTTTCGAGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTc < 1:822660/206‑1 (MQ=255) ccgccgAGCAGTGCGTGCACTTCACCGGCATATAAGGAAAAATCAATGGCTTTCAGCACTTCCACGCCGGAAAACGACTTACCGATGTTTCGAGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGATAAGAt < 1:348258/246‑1 (MQ=255) gtgcgtgcACTTCACCGGCATATAAGGAAAAATCAATGGCTTTCAGCACTTCCACGCCGGAAAACGACTTACCGATGTTTCGAGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGATAAGATTATCTAAAAATCGc > 1:837841/1‑250 (MQ=255) tgcgtgcACTTCACCGGCATATAAGGAAAAATCAATGGCTTTCAGCACTTCCACGCCGGAAAACGACTTACCGATGTTTCGAGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAgg > 1:151273/1‑190 (MQ=255) cACTTCACCGGCATATAAGGAAAAATCAATGGCTTTCAGCACTTCCACGCCGGAAAACGACTTACCGATGTTTCGAGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGATAAGATTATCTAAAAATCGCCTTTAAtt < 1:328985/251‑1 (MQ=255) gCATATAAGGAAAAATCAATGGCTTTCAGCACTTCCACGCCGGAAAACGACTTACCGATGTTTCGAGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGATAAGATTATCTaaaaa > 1:391742/1‑229 (MQ=255) ggCTTTCAGCACTTCCACGCCGGAAAACGACTTACCGATGTTTCGAGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGATAAGAt > 1:208877/1‑199 (MQ=255) aCGACTTACCGATGTTTCGAGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGATAAGATTATCTAAAAATCGCCTTTAATTTTTAAAAAAGTGATCTCCATCATGCTTTTACAAAAAAACGGTAAGAACAATTGata < 1:840746/251‑1 (MQ=255) cgagCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGATAAGATTATCTAAAAATCGCCTTTAATTTTTAAAAAAGTGATCTCCATCATGCTTTTACAAAAAAACGGTAAGAACAATTGATAATAATAAAAAACAAATg < 1:296625/248‑1 (MQ=255) gATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGATAAGATTATCTAAAAATCGCCTTTAGTTTTTAAAAAAGTGATCTCCATCATGCTTTTACAAAAAAACGGTAAGAACAATTg > 1:454612/1‑225 (MQ=255) atatTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGATAAGAt > 1:680055/1‑149 (MQ=255) atatTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGATAAGATTATCTAAAAATCGCCTTTAATTTTTAAAAAAGTGATCTCCATCATGCTTTTACAAAAAAACGGTAAGAACAATTg > 1:743085/1‑224 (MQ=255) gTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGATAAGATTATCTAAAAATCGCCTTTAATTTTTAAAAAAGTGATCTCCATCATGCTTTTACAAAAAAACGGTAAGAACAATTGATAATAATAAAAAACAAATGAATAATACCCAAAATCAATAAAAACAAATAAATCat > 1:724181/1‑251 (MQ=255) tCTTTTACCTGCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGATAAGATTATCTAAAAATCGCCTTTAATTTTTAAAAAAGTGATCTCCATCATGCTTTTACAAAAAAACGGTAAGAACAATTGATAATAATAAAAAACAAATGAATAATACCCAAAATCAATAAAAACAAATAAATCATATGAACg > 1:809428/1‑251 (MQ=255) gCCGCATAGAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGATAAGATTATCTAAAAATCGCCTTTAATTTTTAAAAAAGTGATCTCCATCATGCTTTTACAAAAAAACGGTAAGAACAATTGATAATAATAAAAAACAAATGAATAATACCCAAAATCAATAAAAACAAATAAATCATATGAACGAATTAATGa > 1:645428/1‑250 (MQ=255) gAATGAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGATAAGATTATCTAAAAATCGCCTTTAATTTTTAAAAAAGTGATCTCCATCATGCTTTTACAAAAAAACGGTAAGAACAATTGATAATAATAAAAAACAAATGAATAATACCCAAAATCAATAAAAACAAATAAATCa < 1:653878/225‑1 (MQ=255) gAACAAATGTATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGATAAGATTATCTaa > 1:99412/1‑98 (MQ=255) tATTTAAAAAAAACATTTTTTTAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGATAAGATTATCTAAAAATCGCCTTTAATTTTT‑AAAAAGTGATCTCCATCATGCTTTTACAAAAAAACGGTAAGAACAATTGATAATAATAAAAAACAAATGAATAATACCCAAAATCAATAAAAACAAATAAATCATATGAACGAATTAATGACGGATAATc > 1:176639/1‑237 (MQ=255) | ACCCCGAACCTCCAGTTCTCCGCTATCTTGCGGCTGAATGCCGGCGATAATTTTCATCAGCGTGGATTTCCCCGCCCCGTTACCGCCGAGCAGTGCGTGCACTTCACCGGCATATAAGGAAAAATCAATGGCTTTCAGCACTTCCACGCCGGAAAACGACTTACCGATGTTTCGGGCGGATATTAAGCATTTTGGCTCTGAAATGTGAGTTTGCATCTTTTACCTGCCGCATAGAATGAACAAATGTATTT‑AAAAAAACATTTTTTCAAAATACTAGTCAGGAATGCACAAAATTTCTGAGAACTAGATCACAAATCTGGATAAGATTATCTAAAAATCGCCTTTAATTTTTAAAAAAGTGATCTCCATCATGCTTTTACAAAAAAACGGTAAGAACAATTGATAATAATAAAAAACAAATGAATAATACCCAAAATCAATAAAAACAAATAAATCATATGAACGAATTAATGACGGATAATC > 1/1529588‑1530070 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |