Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 2,043,493 C→T intergenic (+43326/+13263) unknown → / ← unknown tRNA‑Asp‑GTC/tRNA‑Lys‑CTT

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*12,043,4930CT100.0% 253.6 / NA 74intergenic (+43326/+13263)unknown/unknowntRNA‑Asp‑GTC/tRNA‑Lys‑CTT
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (40/34);  total (40/34)

TTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTACCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACTCATTTAACCCCGCCGACGAATTAGGTTTATTAAACCATCCTTTAAATGTTACTGCTGTTCTATTATTTGTTTT  >  1/2043256‑2043737
                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                    
tttGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATc                                                                                                                                                                                                                                         <  1:40514/251‑1 (MQ=255)
    cGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAAt                                                                                                                                                                                                                                      <  1:319195/250‑1 (MQ=255)
      tAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGt                                                                                                                                                                                                                                    <  1:315725/250‑1 (MQ=255)
                aGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTa                                                                                                                                                                                                                         >  1:478662/1‑251 (MQ=255)
                 gTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTaa                                                                                                                                                                                                                        >  1:191228/1‑251 (MQ=255)
                   tattatTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAAt                                                                                                                                                                                                                       >  1:469648/1‑250 (MQ=255)
                    attattGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATcc                                                                                                                                                                                                                     <  1:654082/251‑1 (MQ=255)
                     ttattGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCg                                                                                                                                                                                                                    >  1:270770/1‑251 (MQ=255)
                           gTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTccc                                                                                                                                                                                                               >  1:549158/1‑250 (MQ=255)
                           gTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTccc                                                                                                                                                                                                               >  1:467731/1‑250 (MQ=255)
                                   tGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTAc                                                                                                                                                                                                      <  1:420054/251‑1 (MQ=255)
                                                 aCGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATc                                                                                                                                                                                                                      >  1:132587/1‑221 (MQ=255)
                                                 aCGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCa                                                                                                                                                                                        >  1:826226/1‑251 (MQ=255)
                                                  cGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCaagaag                                                                                                                                                                                                                                               >  1:116904/1‑195 (MQ=255)
                                                     tttACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACtt                                                                                                                                                                                    <  1:135969/251‑1 (MQ=255)
                                                           ggATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAAc                                                                                                                                                                                      <  1:831908/243‑1 (MQ=255)
                                                            gATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTtattat                                                                                                                                                                              <  1:502588/250‑1 (MQ=255)
                                                            gATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTtattat                                                                                                                                                                              <  1:328570/250‑1 (MQ=255)
                                                               gAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATc                                                                                                                                                                                                           >  1:775740/1‑218 (MQ=255)
                                                                aaCCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGt                                                                                                                                                                                                                          <  1:474385/202‑1 (MQ=255)
                                                                aaCCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCt                                                                                                                                                                                                          >  1:733555/1‑218 (MQ=255)
                                                                      aaCCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATATGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTg                                                                                                                                                                   >  1:849060/1‑251 (MQ=255)
                                                                       aCCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGt                                                                                                                                                                  <  1:159991/251‑1 (MQ=255)
                                                                                  cTGAAATCATACGACTAAGATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATGTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTAcc                                                                                                                                                        <  1:25618/250‑1 (MQ=255)
                                                                                     aaaTCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGc                                                                                                                                                    <  1:154111/251‑1 (MQ=255)
                                                                                      aaTCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCg                                                                                                                                                     >  1:61916/1‑249 (MQ=255)
                                                                                                  aaTATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGc                                                                                                                                                                                                                   <  1:542454/175‑1 (MQ=255)
                                                                                                               aaaCCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATGGTCTCTTAAGTCg                                                                                                                          <  1:225168/251‑1 (MQ=255)
                                                                                                                aaCCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCaa                                                                                                                                                                                                                                       <  1:734481/141‑1 (MQ=255)
                                                                                                                aaCCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTAc                                                                                                                                                                                                      <  1:464014/174‑1 (MQ=255)
                                                                                                                             tgtAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCttt                                                                                                             <  1:505698/250‑1 (MQ=255)
                                                                                                                                aaGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAg                                                                                                         >  1:226487/1‑251 (MQ=255)
                                                                                                                                 aGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTc                                                                                                           >  1:186107/1‑248 (MQ=255)
                                                                                                                                   cATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAgg                                                                                                        <  1:613766/249‑1 (MQ=255)
                                                                                                                                   cATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAgg                                                                                                        <  1:67658/249‑1 (MQ=255)
                                                                                                                                     tACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCg                                                                                                    >  1:87733/1‑251 (MQ=255)
                                                                                                                                              aacgaGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAg                                                                                                                             <  1:260453/217‑1 (MQ=255)
                                                                                                                                              aacgaGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCaaga                                                                                           >  1:828518/1‑251 (MQ=255)
                                                                                                                                              aacgaGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCaag                                                                                            <  1:597095/250‑1 (MQ=255)
                                                                                                                                                cgaGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGTTAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCaagaag                                                                                         <  1:473659/251‑1 (MQ=255)
                                                                                                                                                cgaGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCaagaag                                                                                         <  1:309247/251‑1 (MQ=255)
                                                                                                                                                  agaagaagaCATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGtt                                                                                       >  1:565911/1‑251 (MQ=255)
                                                                                                                                                         gaCATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTg                                                                                >  1:183874/1‑251 (MQ=255)
                                                                                                                                                          aCATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTtattat                                                                                                                                                                              >  1:289047/1‑156 (MQ=255)
                                                                                                                                                          aCATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTc                                                                                                           >  1:580618/1‑223 (MQ=255)
                                                                                                                                                          aCATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGa                                                                               >  1:596404/1‑251 (MQ=255)
                                                                                                                                                           cATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGAt                                                                              >  1:81999/1‑251 (MQ=255)
                                                                                                                                                               aGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTc                                                                                    >  1:241097/1‑241 (MQ=255)
                                                                                                                                                               aGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACt                                                                           >  1:596827/1‑250 (MQ=255)
                                                                                                                                                                ggCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGAc                                                                                                                                                              >  1:597716/1‑166 (MQ=255)
                                                                                                                                                                  cTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTg                                                                                                                                                  >  1:220294/1‑176 (MQ=255)
                                                                                                                                                                  cTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTc                                                                                                                                            >  1:303181/1‑182 (MQ=255)
                                                                                                                                                                  cTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATc                                                                                                                 >  1:827513/1‑209 (MQ=255)
                                                                                                                                                                        gACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGt                                                                                                                            >  1:230166/1‑192 (MQ=255)
                                                                                                                                                                             aCCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCtt                                                                                  >  1:197116/1‑229 (MQ=255)
                                                                                                                                                                              ccTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTg                                                                                                                                                                            <  1:203460/138‑1 (MQ=255)
                                                                                                                                                                              ccTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACTCATTTAACCCCGCcga                                                           >  1:647766/1‑251 (MQ=255)
                                                                                                                                                                                    ttCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACTCATTTAACCCCGCCGACGAAtt                                                     >  1:285819/1‑251 (MQ=255)
                                                                                                                                                                                               cccGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACTCATTTAACCCCGCCGACGAATTAGGTttatta                                           <  1:101569/250‑1 (MQ=255)
                                                                                                                                                                                                 cGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACTCATTTAACCCCGCCGACGAATTAGGTTTATTAAAc                                        <  1:155929/251‑1 (MQ=255)
                                                                                                                                                                                                 cGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACTCATTTAACCCCGCCGACGAATTAGGTTTATTAAAc                                        <  1:513418/251‑1 (MQ=255)
                                                                                                                                                                                                   gCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACTCATTTAACCCCGCCGACGAATTAGGTTTATTAAAcc                                       <  1:755845/250‑1 (MQ=255)
                                                                                                                                                                                                       gCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACTCATTTAACCCCGCCGACGAATTAGGTTTATTAAACCATc                                    >  1:513062/1‑249 (MQ=255)
                                                                                                                                                                                                        ctctTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTc                                                                                                           <  1:148107/177‑1 (MQ=255)
                                                                                                                                                                                                        ctctTGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACTCATTTAACCCCGCCGACGAATTAGGTTTATTAAACCATCCtt                                 >  1:715767/1‑251 (MQ=255)
                                                                                                                                                                                                            tGAGGTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACTCATTTAACCCCGCCGACGAATTAGGTTTATTAAACCATCCTTTaaa                             <  1:358899/251‑1 (MQ=255)
                                                                                                                                                                                                                gTGAAATTGTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACTCATTTAACCCCGCCGACGAATTAGGTTTATTAAACCATCCTTTAAATg                           <  1:782172/249‑1 (MQ=255)
                                                                                                                                                                                                                        gTCTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACTCATTTAACCCCGCCGACGAATTAGGTTTATTAAACCATCCTTTAAATGTTActg                     >  1:253655/1‑247 (MQ=255)
                                                                                                                                                                                                                          cTTTTTATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGt                                                                                                                            >  1:151538/1‑142 (MQ=255)
                                                                                                                                                                                                                            ttttATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACTCATTTAACCCCGCCGACGAATTAGGt                                                 >  1:214301/1‑215 (MQ=255)
                                                                                                                                                                                                                               tATTCCCACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACTCATTTAACCCCGCCGACGAATTAGGTTTATTAAACCATCCTTTAAATGTTACTGCTGTTCtatta          <  1:178503/251‑1 (MQ=255)
                                                                                                                                                                                                                                    ccACTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACTCATTTAACCCCGCCGACGAATTAGGTTTATTAAACCATCCTTTAAATGTTACTGCTGTTCTATTATTTGt     <  1:881081/251‑1 (MQ=255)
                                                                                                                                                                                                                                       cTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACTCATTTAAcc                                                                  >  1:148681/1‑187 (MQ=255)
                                                                                                                                                                                                                                       cTTTTATCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACTCATTTAACCCCGCCGACGAATTAGGTTTATTAAACCATCCTTTAAATGTTACTGCTGTTCTATTATTTGtttt  >  1:466711/1‑251 (MQ=255)
                                                                                                                                                                                                                                             |                                                                                                                                                                                                                                                    
TTTGCGTAAGAGTTAAAGTTATTATTGGTCTGCAATGGCGAAGCGGATAACGCTTTACCGGATGAACCAAAACCACTGGTTGCTGAAATCATACGACTAATATCATTTGACAAACCGGACTTTTGTGTAAGCATACTTGACGAACGAGAAGAAGACATAAGGCTACTTGACTTACCTTTATTCTTAATAAGCCCGGCAAGCTCTTGAGGTGAAATTGTCTTTTTATTCCCACTTTTACCAAGAAGATTATCAATGTCTTGCGAAGTAATCCGCTCCCCATCTTTACCGATAATTTCTTCAACTTTATTATTGAGTGATTTGTCGACTTTACCTCGCTGTAACTCAAATTGTCTCTTAAGTCGTGCACGATCCTTTTCAGGTGCGTATTCAAGAAGTTTTCTTTGATACTCATTTAACCCCGCCGACGAATTAGGTTTATTAAACCATCCTTTAAATGTTACTGCTGTTCTATTATTTGTTTT  >  1/2043256‑2043737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑