| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 2,028,272 | T→G | intergenic (+28105/+28484) | unknown → / ← unknown | tRNA‑Asp‑GTC/tRNA‑Lys‑CTT |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 2,028,272 | 0 | T | G | 100.0% | 140.9 / NA | 42 | intergenic (+28105/+28484) | unknown/unknown | tRNA‑Asp‑GTC/tRNA‑Lys‑CTT |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (19/23); total (19/23) | |||||||||||
CGCGTTTACACTGACGATCGATCACTAGATGAATGTATGGCGGTATATGACGGTGATGTAGTTCAGGTGCCAAGAGGTTATCATCCCGTTGCCACCATCGCCGGTTATGAAAATTATTACTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCTACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGATATAACAAGATGAAAGAAAAATCTCAATTAACCAATTTACAAACAGAAATACAAACCCGTTACGACAGCTTAAGTAAAAGGCTCAAACAGGTTGCTCAATATATTTTGGACAACAGCGACAGCATCGTTTTTGAT > 1/2028030‑2028502 | cgcgTTTACACTGACGATCGATCACTAGATGAATGTATGGCGGTATATGACGGTGATGTAGTTCAGGTGCCAAGAGGTTATCATCCCGTTGCCACCATCGCCGGTTATGAAAATTATTACTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAg < 1:210781/251‑1 (MQ=255) aTGTATGGCGGTATATGACGGTGATGTAGTTCAGGTGCCAAGAGGTTATCATCCCGTTGCCACCATCGCCGGTTATGAAAATTATTACTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAg < 1:288951/219‑1 (MQ=255) aTGTATGGCGGTATATGACGGTGATGTAGTTCAGGTGCCAAGAGGTTATCATCCCGTTGCCACCATCGCCGGTTATGAAAATTATTACTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCtt > 1:252963/1‑251 (MQ=255) aTGTATGGCGGTATATGACGGTGATGTAGTTCAGGTGCCAAGAGGTTATCATCCCGTTGCCACCATCGCCGGTTATGAAAATTATTACTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAAGAACCGCtt > 1:871292/1‑251 (MQ=255) gTATATGACGGTGATGTAGTTCAGGTGCCAAGAGGTTATCATCCCGTTGCCACCATCGCCGGTTATGAAAATTATTACTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAAc < 1:107851/236‑1 (MQ=255) atatGACGGTGATGTAGTTCAGGTGCCAAGAGGTTATCATCCCGTTGCCACCATCGCCGGTTATGAAAATTATTACTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCg < 1:333115/236‑1 (MQ=255) tGTAGTTCAGGTGCCAAGAGGTTATCATCCCGTTGCCACCATCGCCGGTTATGAAAATTATTACTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCAtct < 1:710377/251‑1 (MQ=255) gTTCAGGTGCCAAGAGGTTATCATCCCGTTGCCACCATCGCCGGTTATGAAAATTATTACTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAg < 1:457333/191‑1 (MQ=255) gTGCCAAGAGGTTATCATCCCGTTGCCACCATCGCCGGTTATGAAAATTATTACTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAatat < 1:119629/250‑1 (MQ=255) gTGCCAAGAGGTTATCATCCCGTTGCCACCATCGCCGGTTATGAAAATTATTACTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAatat < 1:133904/250‑1 (MQ=255) ccAAGAGGTTATCATCCCGTTGCCACCATCGCCGGTTATGAAAATTATTACTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTa < 1:271687/250‑1 (MQ=255) tATCATCCCGTTGCCACCATCGCCGGTTATGAAAATTATTACTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGaa > 1:31241/1‑245 (MQ=255) atcatcCCGTTGCCACCATCGCCGGTTATGAAAATTATTACTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAg < 1:844420/177‑1 (MQ=255) tcCCGTTGCCACCATCGCCGGTTATGAAAATTATTACTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATAtttatttta > 1:667765/1‑251 (MQ=255) ttATGAAAATTATTACTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGATATAACAAGATgaaaga < 1:793562/251‑1 (MQ=255) aaTTATTACTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAAtattta > 1:212893/1‑218 (MQ=255) ttattaCTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAatat > 1:706171/1‑203 (MQ=255) aCTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATg < 1:841564/203‑1 (MQ=255) gTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTc < 1:370474/140‑1 (MQ=255) tGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGATATAACAAGATGAAAGAAAAATCTCAATTAACCAATTTa < 1:743128/250‑1 (MQ=255) gATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGATATAACAAGATGAAAGAAAAATCTCAATTAACCAATTTACa > 1:194771/1‑251 (MQ=255) ggCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGATATAACAAGATGAAAGAAAAATCTCAATTAACCAATTTACaaa > 1:411299/1‑250 (MQ=255) ggtGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTGATCTCGATAATATTTATGAATATTTATTTTATGGATATAACAAGATGAAAGAAAAATCTCAATTAACCAATTTACAAACAGAAATACa > 1:306359/1‑251 (MQ=255) gagaAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATg < 1:800249/178‑1 (MQ=255) gaAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGATATAACAAGATGAAAGAAAAATCTCAATTAACCAATTTACAAACAGAAATACAAAcc > 1:805784/1‑250 (MQ=255) aaaaTGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGATATAACAAGATGAAAGAAAAATCTCAATTAACCAATTTACAAACAGAAATACAAAcc < 1:636128/249‑1 (MQ=255) ggCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAg < 1:470459/100‑1 (MQ=255) cGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGATATAACAAGATGAAAGAAAAATCTCAATTAACCAATTTACAAACAGAAATACAAACCCGTTACGAc < 1:268382/251‑1 (MQ=255) ggATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGATATAAc < 1:216764/174‑1 (MQ=255) gATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGATATAACAAGATGAAAGAAAAATCTCAATTAACCAATTTACAAACAGAAATACAAACCCGTTACGACAGCTTAAGTAAAAGGCt > 1:232231/1‑250 (MQ=255) aCGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGATATAACAAGATGAAAGAAAAATCTCAATTAACCAATTTACAAACAGAAATACAAACCCGTTACGACAGCTTAAGTAAAAGGCTCAAAc < 1:540161/251‑1 (MQ=255) ccTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGATATAACAAGATGAAAGAAAAATCTCAATTAACCAATTTACAAACAGAAATACAAACCCGTTACGACAGCTTAAGTa < 1:602192/236‑1 (MQ=255) gATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGATATAACAAGATGAAAGAAAAATCTCAATTAACCAAttt > 1:638988/1‑194 (MQ=255) gCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGataa > 1:34487/1‑123 (MQ=255) gaaTACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAatat > 1:364249/1‑121 (MQ=255) gaaTACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGATATAACAAGATGAAAGAAAAATCTCAATTAACCAATTTACAAACAGAAATACAAACCCGTTACGACAGCTTAAGTAAAAGGCTCAAACAGGTTGCTCAATATATTTTg > 1:503987/1‑251 (MQ=255) gaaTACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGATATAACAAGATGAAAGAAAAATCTCAATTAACCAATTTACAAACAGAAATACAAACCCGTTACGACAGCTTAAGTAAAAGGCTCAAACAGGTTGCTCAATATATTTTg > 1:287812/1‑251 (MQ=255) gATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGATATAACAAGATGAAAGAAAAATCTCAATTAACCAATTTACAAACAGAAATACAAACCCGTTACGACAGCTTAAGTAAAAGGCTCAAACAGGTTGCTCAATATATTTTGGACAACAg > 1:30380/1‑250 (MQ=255) tAGTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGat > 1:722554/1‑123 (MQ=255) gTGAAAGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTttc < 1:333216/81‑1 (MQ=255) aaGCGTAAATCCATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGATATAACAAGATGAAAGAAAAATCTCAATTAACCAATTTACAAACAGAAATACAAACCCGTTACGACAGCTTAAGTAAAAGGCTCAAACAGGTTGCTCAATATATTTTGGACAACAGCGACAGCATCGTTTTTGAt < 1:775351/251‑1 (MQ=255) ccATAAAATCGACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGaa > 1:400371/1‑91 (MQ=255) | CGCGTTTACACTGACGATCGATCACTAGATGAATGTATGGCGGTATATGACGGTGATGTAGTTCAGGTGCCAAGAGGTTATCATCCCGTTGCCACCATCGCCGGTTATGAAAATTATTACTTAAACGTGATGGCCGGTCCGGTGAGAAAATGGCGTTTTACCTGGGAACAGGATCACGCCTGGATTAACAGCGAAGAATACGCCGATAAATTCAAATAGTGAAAGCGTAAATCCATAAAATCTACTAAAAGTGCAGTCATTTTTTCAAACGAAATAACCGCTTTTTTCTTGAATTTTTCATTCATCTCGATAATATTTATGAATATTTATTTTATGGATATAACAAGATGAAAGAAAAATCTCAATTAACCAATTTACAAACAGAAATACAAACCCGTTACGACAGCTTAAGTAAAAGGCTCAAACAGGTTGCTCAATATATTTTGGACAACAGCGACAGCATCGTTTTTGAT > 1/2028030‑2028502 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |