| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | 1 | 1,857,273 | C→T | intergenic (+7897/‑142719) | unknown → / → unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 1 | 1,857,273 | 0 | C | T | 100.0% | 132.0 / NA | 40 | intergenic (+7897/‑142719) | unknown/unknown | tRNA‑Leu‑CAA/tRNA‑Asp‑GTC |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (19/21); total (19/21) | |||||||||||
GATTACAGGTGTATTGGCTGAGTACATCGCGTAAAATCCGGTACTTTTTTACTAATCCTGTGCACAAGGGATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATCTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAGCCTTAACATATGCCAGATATTTTTGAAAATAGGTTGTTTCCGATTTCTGCTGGATTCCATATTTTTTTTATTAAAATCAATAGTGGTAAAAACACTTTCTTGGTTAATACCATCAATTAAAACGGTATTTTGATTAATACATTTTTTTACAAAAAGATCCCC > 1/1857043‑1857515 | gatTACAGGTGTATTGGCTGAGTACATCGCGTAAAATCCGGTACTTTTTTACTAATCCTGTGCACAAGGGATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCaa > 1:498373/1‑251 (MQ=255) gtATTGGCTGAGTACATCGCGTAAAATCCGGTACTTTTTTACTAATCCTGTGCACAAGGGATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGa > 1:359379/1‑251 (MQ=255) ggCTGAGTACATCGCGTAAAATCCGGTACTTTTTTACTAATCCTGTGCACAAGGGATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGtt > 1:488441/1‑251 (MQ=255) cTGAGTACATCGCGTAAAATCCGGTACTTTTTTACTAATCCTGTGCACAAGGGATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTc < 1:756062/250‑1 (MQ=255) gAGTACATCGCGTAAAATCCGGTACTTTTTTACTAATCCTGTGCACAAGGGATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCtt > 1:173261/1‑251 (MQ=255) ccGGTACTTTTTTACTAATCCTGTGCACAAGGGATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAg < 1:691326/251‑1 (MQ=255) aCTTTTTTACTAATCCTGTGCACAAGGGATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAAt < 1:680217/251‑1 (MQ=255) ttttttACTAATCCTGTGCACAAGGGATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAg < 1:818414/251‑1 (MQ=255) ttttACTAATCCTGTGCACAAGGGATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGAc < 1:781072/251‑1 (MQ=255) tACTAATCCTGTGCACAAGGGATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCatat > 1:814038/1‑195 (MQ=255) tACTAATCCTGTGCACAAGGGATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGa > 1:459611/1‑251 (MQ=255) aCTAATCCTGTGCACAAGGGATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTc > 1:782344/1‑184 (MQ=255) aTCCTGTGCACAAGGGATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTCGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAAt > 1:398210/1‑250 (MQ=255) gtgCACAAGGGATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTc < 1:243722/175‑1 (MQ=255) gtgCACAAGGGATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGa > 1:189374/1‑251 (MQ=255) tgCACAAGGGATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAg < 1:265821/251‑1 (MQ=255) ggATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAGCCTTAACa > 1:456414/1‑251 (MQ=255) gATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAGCCTTAACa < 1:504212/250‑1 (MQ=255) aaTCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAGCCTTAACat < 1:641489/245‑1 (MQ=255) ttCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAGCCTTAACATATGCCAGATATTTTTGAAAAt < 1:85644/249‑1 (MQ=255) cGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAGCCTTAACATATGCCAGATATTTTTGAAAATAGgt < 1:246758/251‑1 (MQ=255) cTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACGCGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCatat < 1:851074/144‑1 (MQ=255) cTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCa > 1:267162/1‑207 (MQ=255) aCCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAGCCTTAACATATGCCAGATATTTTTGAAAATAGGTTGTTTCCGAttt > 1:54855/1‑250 (MQ=255) gTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGAc < 1:227892/178‑1 (MQ=255) gTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATaa > 1:708247/1‑184 (MQ=255) ttattaAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACtt > 1:362782/1‑139 (MQ=255) ttattaAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAGCCTTAACat < 1:513463/185‑1 (MQ=255) cTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCAt > 1:684281/1‑154 (MQ=255) tattatATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAGCCTTAACATATGCCAGATATTTTTGAAAATAGGTTGTTTCCGATTTCTGCTGGATTCCATATTTTTTTTATTAAAATCAATAGTGGTAAAAACACTTTCTTgg > 1:899374/1‑251 (MQ=255) attatATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGa > 1:281557/1‑136 (MQ=255) attatATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAGCCTTAACa < 1:176456/155‑1 (MQ=255) atatCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAGCCTTAACat < 1:571642/153‑1 (MQ=255) acacGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAGCCTTAACATATGCCAGATATTTTTGAAAATAGGTTGTTTCCGATTTCTGCTGGATTCCATATTTTTTTTATTAAAATCAATAGTGGTAAAAACACTTTCTTGGTTAATACCATCAATTa < 1:751213/251‑1 (MQ=255) ccGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAGCCTTAACATATGCCAGATATTTTTGAAAATAGGTTGTTTCCGATTTCTGCTGGATTCCATATTTTTTTTATTAAAATCAATAGTGGTAAAAACACTTTCTTGGTTAATACCATCAATTAAAAc < 1:755347/245‑1 (MQ=255) gCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGAc > 1:346581/1‑68 (MQ=255) cccTTCGCGTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAGCCTTAACATATGCCAGATATTTTTGAAAATAGGTTGTTTCCGATTTCTGCTGGATTCCATATTTTTTTTATTAAAATCAATAGTGGTAAAAACACTTTCTTGGTTAATACCATCAATTAAAACGGTATTTTGAt < 1:402807/243‑1 (MQ=255) cgTTATACCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAGCCTTAACATATGCCAGATATTTTTGAAAATAGGTTGTTTCCGATTTCTGCTGGATTc > 1:379271/1‑159 (MQ=255) ataCCAAAGAAAGCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAGCCTTAACATATGCCAGATATTTTTGAAAATAGGTTGTTTCCGATTTCTGCTGGATTCCATATTTTTTTTATTAAAATCAATAg < 1:499724/181‑1 (MQ=255) aaagCCATTTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAGCCTTAACATATGCCAGATATTTTTGAAAATAGGTTGTTTCCGATTTCTGCTGGATTCCATATTTTTTTTATTAAAATCAATAGTGGTAAAAACACTTTCTTGGTTAATACCATCAATTAAAACGGTATTTTGATTAATACATTTTTTTACAAAAAGATcccc < 1:819474/251‑1 (MQ=255) | GATTACAGGTGTATTGGCTGAGTACATCGCGTAAAATCCGGTACTTTTTTACTAATCCTGTGCACAAGGGATTCTAATCTGTAGGTCGAAAGTTCGAATCCTTCACGACCTATCAATTAGTTATTGACATCAAAATTATTAAATTGACTGCTAACTTTTTACTTATTATATCTGCATTCACACGAGTTACCGAAGCTCTAATCCCTTCGCGTTATACCAAAGAAAGCCATCTTCATTTGCATATTTGTCAATTTTTTTTGACAGTTCCTTACTTGCATTATATTCAAGTAAATAGACAGATAATCCATGAGCCTTAACATATGCCAGATATTTTTGAAAATAGGTTGTTTCCGATTTCTGCTGGATTCCATATTTTTTTTATTAAAATCAATAGTGGTAAAAACACTTTCTTGGTTAATACCATCAATTAAAACGGTATTTTGATTAATACATTTTTTTACAAAAAGATCCCC > 1/1857043‑1857515 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |